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Spg002165 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002165
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold1:30711870..30714348
RNA-Seq ExpressionSpg002165
SyntenySpg002165
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155341.1 uncharacterized protein LOC111022474 [Momordica charantia]8.9e-2042.14Show/hide
Query:  PNRAPEDPLESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------------DEACNWWKSISAAEDHANVPISWERFKDLLFDYYF
        P RA     E QF+RDFK + PP F+G SE P A E W+  LEA+                     EA NWW+S++AAEDHANVP++W RFKDLL++YYF
Subjt:  PNRAPEDPLESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------------DEACNWWKSISAAEDHANVPISWERFKDLLFDYYF

Query:  PGQSKMTRRLIEFVR-------VQQPEPQFLAFSSLSSEY
        P   +  +R  EF+R       V Q E +F   S    +Y
Subjt:  PGQSKMTRRLIEFVR-------VQQPEPQFLAFSSLSSEY

XP_022155925.1 uncharacterized protein LOC111022925 [Momordica charantia]5.2e-2036.76Show/hide
Query:  PNRAPEDPLESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------------DEACNWWKSISAAEDHANVPISWERFKDLLFDYYF
        P+R      E QF+RDFK + PP F+G SE P AAE W+  LEA+                     EA NWW+S++AAEDHANVP++W RFKDLL++YYF
Subjt:  PNRAPEDPLESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------------DEACNWWKSISAAEDHANVPISWERFKDLLFDYYF

Query:  PGQSKMTRRLIEFVR-------VQQPEPQFLAFSSLSSEYFGLGSLHPELILAAL-----GLLRLPWKRYRRVRLRSISMIGTCL
        P   +  +R  EF+R       V Q E +F   S    +Y     L  +  +  L     GLL L         +R   ++  CL
Subjt:  PGQSKMTRRLIEFVR-------VQQPEPQFLAFSSLSSEYFGLGSLHPELILAAL-----GLLRLPWKRYRRVRLRSISMIGTCL

XP_022156328.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111023249 [Momordica charantia]3.3e-2243.57Show/hide
Query:  PNRAPEDPLESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------------DEACNWWKSISAAEDHANVPISWERFKDLLFDYYF
        P RA     E QF+RDFKC+ PP F+G SE P AAE W+  LEA+                     EA NWW+S++AAEDHANVP++W RFKDLL++YYF
Subjt:  PNRAPEDPLESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------------DEACNWWKSISAAEDHANVPISWERFKDLLFDYYF

Query:  PGQSKMTRRLIEFVR-------VQQPEPQFLAFSSLSSEY
        P  ++  +R +EF+R       V Q E +F   S   ++Y
Subjt:  PGQSKMTRRLIEFVR-------VQQPEPQFLAFSSLSSEY

XP_022158637.1 uncharacterized protein LOC111025088 [Momordica charantia]4.4e-1946.67Show/hide
Query:  HPNRAPEDP-LESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------------DEACNWWKSISAAEDHANVPISWERFKDLLFDY
        HP R    P  E+QF++DFK Y PP+FDG SE   AAE W+  LEA+                     EA NWW SI+ AEDHANVP+ W RFKDLL+DY
Subjt:  HPNRAPEDP-LESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------------DEACNWWKSISAAEDHANVPISWERFKDLLFDY

Query:  YFPGQSKMTRRLIEFVRVQQ
        Y+P   K T+   EF+ + Q
Subjt:  YFPGQSKMTRRLIEFVRVQQ

XP_022158645.1 uncharacterized protein LOC111025102 [Momordica charantia]2.3e-2042.86Show/hide
Query:  PNRAPEDPLESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------------DEACNWWKSISAAEDHANVPISWERFKDLLFDYYF
        P RA     E QF+RDFK + PP F+G SE P AAE W+  LEA+                     EA NWW+S++AAEDHANVP++W RFKDLL++YYF
Subjt:  PNRAPEDPLESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------------DEACNWWKSISAAEDHANVPISWERFKDLLFDYYF

Query:  PGQSKMTRRLIEFVR-------VQQPEPQFLAFSSLSSEY
        P   +  +R  EF+R       V Q E +F   S    +Y
Subjt:  PGQSKMTRRLIEFVR-------VQQPEPQFLAFSSLSSEY

TrEMBL top hitse value%identityAlignment
A0A6J1DNV8 uncharacterized protein LOC1110229252.5e-2036.76Show/hide
Query:  PNRAPEDPLESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------------DEACNWWKSISAAEDHANVPISWERFKDLLFDYYF
        P+R      E QF+RDFK + PP F+G SE P AAE W+  LEA+                     EA NWW+S++AAEDHANVP++W RFKDLL++YYF
Subjt:  PNRAPEDPLESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------------DEACNWWKSISAAEDHANVPISWERFKDLLFDYYF

Query:  PGQSKMTRRLIEFVR-------VQQPEPQFLAFSSLSSEYFGLGSLHPELILAAL-----GLLRLPWKRYRRVRLRSISMIGTCL
        P   +  +R  EF+R       V Q E +F   S    +Y     L  +  +  L     GLL L         +R   ++  CL
Subjt:  PGQSKMTRRLIEFVR-------VQQPEPQFLAFSSLSSEYFGLGSLHPELILAAL-----GLLRLPWKRYRRVRLRSISMIGTCL

A0A6J1DQB9 Reverse transcriptase1.6e-2243.57Show/hide
Query:  PNRAPEDPLESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------------DEACNWWKSISAAEDHANVPISWERFKDLLFDYYF
        P RA     E QF+RDFKC+ PP F+G SE P AAE W+  LEA+                     EA NWW+S++AAEDHANVP++W RFKDLL++YYF
Subjt:  PNRAPEDPLESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------------DEACNWWKSISAAEDHANVPISWERFKDLLFDYYF

Query:  PGQSKMTRRLIEFVR-------VQQPEPQFLAFSSLSSEY
        P  ++  +R +EF+R       V Q E +F   S   ++Y
Subjt:  PGQSKMTRRLIEFVR-------VQQPEPQFLAFSSLSSEY

A0A6J1DRF5 uncharacterized protein LOC1110224744.3e-2042.14Show/hide
Query:  PNRAPEDPLESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------------DEACNWWKSISAAEDHANVPISWERFKDLLFDYYF
        P RA     E QF+RDFK + PP F+G SE P A E W+  LEA+                     EA NWW+S++AAEDHANVP++W RFKDLL++YYF
Subjt:  PNRAPEDPLESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------------DEACNWWKSISAAEDHANVPISWERFKDLLFDYYF

Query:  PGQSKMTRRLIEFVR-------VQQPEPQFLAFSSLSSEY
        P   +  +R  EF+R       V Q E +F   S    +Y
Subjt:  PGQSKMTRRLIEFVR-------VQQPEPQFLAFSSLSSEY

A0A6J1DWE6 uncharacterized protein LOC1110251021.1e-2042.86Show/hide
Query:  PNRAPEDPLESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------------DEACNWWKSISAAEDHANVPISWERFKDLLFDYYF
        P RA     E QF+RDFK + PP F+G SE P AAE W+  LEA+                     EA NWW+S++AAEDHANVP++W RFKDLL++YYF
Subjt:  PNRAPEDPLESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------------DEACNWWKSISAAEDHANVPISWERFKDLLFDYYF

Query:  PGQSKMTRRLIEFVR-------VQQPEPQFLAFSSLSSEY
        P   +  +R  EF+R       V Q E +F   S    +Y
Subjt:  PGQSKMTRRLIEFVR-------VQQPEPQFLAFSSLSSEY

A0A6J1DXQ7 uncharacterized protein LOC1110250882.1e-1946.67Show/hide
Query:  HPNRAPEDP-LESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------------DEACNWWKSISAAEDHANVPISWERFKDLLFDY
        HP R    P  E+QF++DFK Y PP+FDG SE   AAE W+  LEA+                     EA NWW SI+ AEDHANVP+ W RFKDLL+DY
Subjt:  HPNRAPEDP-LESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAM--------------------DEACNWWKSISAAEDHANVPISWERFKDLLFDY

Query:  YFPGQSKMTRRLIEFVRVQQ
        Y+P   K T+   EF+ + Q
Subjt:  YFPGQSKMTRRLIEFVRVQQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAACCCTGTCACCCAAATCGGGCACCAGAGGACCCGTTAGAGTCCCAGTTCCTTCGTGACTTCAAGTGTTACGACCCTCCCTCTTTTGATGGGCGATCTGAGAACCCGTT
GGCAGCCGAGCGCTGGATAGGCAACCTCGAAGCTATGGATGAAGCCTGCAATTGGTGGAAATCAATATCAGCCGCTGAGGATCACGCTAACGTACCGATTTCGTGGGAGA
GGTTTAAAGATCTCCTCTTTGACTACTACTTCCCTGGACAGTCAAAGATGACAAGGAGACTGATCGAATTCGTGCGCGTCCAACAACCTGAACCTCAGTTTCTCGCGTTT
TCGTCTCTGTCCAGCGAGTATTTTGGCCTCGGATCCCTTCATCCGGAGCTCATCTTGGCTGCTTTAGGCTTGTTGAGGTTGCCTTGGAAGCGCTATAGACGTGTACGCTT
AAGAAGTATAAGCATGATAGGTACTTGTCTTAGGCTTAGTGACTGTGGAGTCGAGCATGATGAGTCCGATTGGCATGTGCGGAGCATGACGCGGAAATCATTTGCGGAGC
ATGACACGGAAATCATGTGGAGTCTAATGCGTGCGTGCATAGCGTGTGGTTTGGATGACGAGCTGGATCCTGGTGAGGAAGAGGAGCACTACGAGGAGGAACCTTAG
mRNA sequenceShow/hide mRNA sequence
CAACCCTGTCACCCAAATCGGGCACCAGAGGACCCGTTAGAGTCCCAGTTCCTTCGTGACTTCAAGTGTTACGACCCTCCCTCTTTTGATGGGCGATCTGAGAACCCGTT
GGCAGCCGAGCGCTGGATAGGCAACCTCGAAGCTATGGATGAAGCCTGCAATTGGTGGAAATCAATATCAGCCGCTGAGGATCACGCTAACGTACCGATTTCGTGGGAGA
GGTTTAAAGATCTCCTCTTTGACTACTACTTCCCTGGACAGTCAAAGATGACAAGGAGACTGATCGAATTCGTGCGCGTCCAACAACCTGAACCTCAGTTTCTCGCGTTT
TCGTCTCTGTCCAGCGAGTATTTTGGCCTCGGATCCCTTCATCCGGAGCTCATCTTGGCTGCTTTAGGCTTGTTGAGGTTGCCTTGGAAGCGCTATAGACGTGTACGCTT
AAGAAGTATAAGCATGATAGGTACTTGTCTTAGGCTTAGTGACTGTGGAGTCGAGCATGATGAGTCCGATTGGCATGTGCGGAGCATGACGCGGAAATCATTTGCGGAGC
ATGACACGGAAATCATGTGGAGTCTAATGCGTGCGTGCATAGCGTGTGGTTTGGATGACGAGCTGGATCCTGGTGAGGAAGAGGAGCACTACGAGGAGGAACCTTAG
Protein sequenceShow/hide protein sequence
QPCHPNRAPEDPLESQFLRDFKCYDPPSFDGRSENPLAAERWIGNLEAMDEACNWWKSISAAEDHANVPISWERFKDLLFDYYFPGQSKMTRRLIEFVRVQQPEPQFLAF
SSLSSEYFGLGSLHPELILAALGLLRLPWKRYRRVRLRSISMIGTCLRLSDCGVEHDESDWHVRSMTRKSFAEHDTEIMWSLMRACIACGLDDELDPGEEEEHYEEEP