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Spg002175 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002175
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold1:31236030..31237158
RNA-Seq ExpressionSpg002175
SyntenySpg002175
Gene Ontology termsGO:0009987 - cellular process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW22403.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]1.3e-0836Show/hide
Query:  NGGLGIGYLKE---------RNNALLANRGGRIKFWSDKWVGNMALKDAFPDLLLISLKKNAIVTECW--NVEQNYWNLDFRRGIPDREFVSRLGLISTI
        NG  G+G  KE         +N      +G RI+FW+D W GNM L   FP+L  ++  +N  V ECW  N  Q  WNL   R + D E    +GL+  +
Subjt:  NGGLGIGYLKE---------RNNALLANRGGRIKFWSDKWVGNMALKDAFPDLLLISLKKNAIVTECW--NVEQNYWNLDFRRGIPDREFVSRLGLISTI

RVW82545.1 hypothetical protein CK203_047067 [Vitis vinifera]4.4e-0934.48Show/hide
Query:  GGLGIGYLKERNNALLAN----------------RGGRIKFWSDKWVGNMALKDAFPDLLLISLKKNAIVTECW--NVEQNYWNLDFRRGIPDREFVSRL
        GGLGI  +   N ALL +                +G R+KFW+D+W GN AL   FP L  +++ +NA V E W  ++ Q  WNL F R   D E     
Subjt:  GGLGIGYLKERNNALLAN----------------RGGRIKFWSDKWVGNMALKDAFPDLLLISLKKNAIVTECW--NVEQNYWNLDFRRGIPDREFVSRL

Query:  GLISTIDTVRVGDGVD
        GL++ +   R+    D
Subjt:  GLISTIDTVRVGDGVD

RVX16794.1 putative ribonuclease H protein [Vitis vinifera]1.3e-0837Show/hide
Query:  NGGLGIGYLKE---------RNNALLANRGGRIKFWSDKWVGNMALKDAFPDLLLISLKKNAIVTECW--NVEQNYWNLDFRRGIPDREFVSRLGLISTI
        NG  G+G  KE          N      +G RI+FW+D W GN  L   FP+L  +++ +N  V ECW  NV Q  WNL   R + D E    LGL+  +
Subjt:  NGGLGIGYLKE---------RNNALLANRGGRIKFWSDKWVGNMALKDAFPDLLLISLKKNAIVTECW--NVEQNYWNLDFRRGIPDREFVSRLGLISTI

XP_022149391.1 uncharacterized protein LOC111017819 [Momordica charantia]1.4e-1054.24Show/hide
Query:  RGGRIKFWSDKWVGNMALKDAFPDLLLISLKKNAIVTECWNVEQNYWNLDFRRGIPDRE
        +G RI+FW DKW G   L + FPDL  ISLKK A+V +CW+     W+L FRRG+ DRE
Subjt:  RGGRIKFWSDKWVGNMALKDAFPDLLLISLKKNAIVTECWNVEQNYWNLDFRRGIPDRE

XP_022158566.1 uncharacterized protein LOC111025019 [Momordica charantia]9.4e-1254.24Show/hide
Query:  ANRGGRIKFWSDKWVGNMALKDAFPDLLLISLKKNAIVTECWNVEQNYWNLDFRRGIPD
        AN+G R+ FW DKW GN+ L D FPD+  +SLK+NA V +CWN E   W+L  RRG+ D
Subjt:  ANRGGRIKFWSDKWVGNMALKDAFPDLLLISLKKNAIVTECWNVEQNYWNLDFRRGIPD

TrEMBL top hitse value%identityAlignment
A0A438CGR0 Transposon TX1 uncharacterized 149 kDa protein6.1e-0936Show/hide
Query:  NGGLGIGYLKE---------RNNALLANRGGRIKFWSDKWVGNMALKDAFPDLLLISLKKNAIVTECW--NVEQNYWNLDFRRGIPDREFVSRLGLISTI
        NG  G+G  KE         +N      +G RI+FW+D W GNM L   FP+L  ++  +N  V ECW  N  Q  WNL   R + D E    +GL+  +
Subjt:  NGGLGIGYLKE---------RNNALLANRGGRIKFWSDKWVGNMALKDAFPDLLLISLKKNAIVTECW--NVEQNYWNLDFRRGIPDREFVSRLGLISTI

A0A438HDJ7 zf-RVT domain-containing protein2.1e-0934.48Show/hide
Query:  GGLGIGYLKERNNALLAN----------------RGGRIKFWSDKWVGNMALKDAFPDLLLISLKKNAIVTECW--NVEQNYWNLDFRRGIPDREFVSRL
        GGLGI  +   N ALL +                +G R+KFW+D+W GN AL   FP L  +++ +NA V E W  ++ Q  WNL F R   D E     
Subjt:  GGLGIGYLKERNNALLAN----------------RGGRIKFWSDKWVGNMALKDAFPDLLLISLKKNAIVTECW--NVEQNYWNLDFRRGIPDREFVSRL

Query:  GLISTIDTVRVGDGVD
        GL++ +   R+    D
Subjt:  GLISTIDTVRVGDGVD

A0A6J1D884 uncharacterized protein LOC1110178196.6e-1154.24Show/hide
Query:  RGGRIKFWSDKWVGNMALKDAFPDLLLISLKKNAIVTECWNVEQNYWNLDFRRGIPDRE
        +G RI+FW DKW G   L + FPDL  ISLKK A+V +CW+     W+L FRRG+ DRE
Subjt:  RGGRIKFWSDKWVGNMALKDAFPDLLLISLKKNAIVTECWNVEQNYWNLDFRRGIPDRE

A0A6J1E196 uncharacterized protein LOC1110250194.5e-1254.24Show/hide
Query:  ANRGGRIKFWSDKWVGNMALKDAFPDLLLISLKKNAIVTECWNVEQNYWNLDFRRGIPD
        AN+G R+ FW DKW GN+ L D FPD+  +SLK+NA V +CWN E   W+L  RRG+ D
Subjt:  ANRGGRIKFWSDKWVGNMALKDAFPDLLLISLKKNAIVTECWNVEQNYWNLDFRRGIPD

A0A7N2LIP2 N2227 domain-containing protein3.6e-0940.86Show/hide
Query:  HSVKRSWTALPLYNGGLGIGYLKERNNALLANRGGRIKFWSDKWVGNMALKDAFPDLLLISLKKNAIVTE--CWNVEQNYWNLDFRRGIPDRE
        H V  +    PL  GGLGI  L+  N+ALL     R+KFW   W G+  L++AFP+L  IS  K++ V E  CW+  + +W+  FRR   D E
Subjt:  HSVKRSWTALPLYNGGLGIGYLKERNNALLANRGGRIKFWSDKWVGNMALKDAFPDLLLISLKKNAIVTE--CWNVEQNYWNLDFRRGIPDRE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCGAGGAATTCCTCCTCCATCTGCTATTTCAGGGTGCCTACCATGTTGGTAACCATTCGGTTAAGCGTAGTTGGACGGCATTGCCTCTTTATAATGGGGGCCTTGG
GATAGGATACTTGAAAGAAAGGAATAATGCTCTCCTAGCAAACAGAGGTGGGAGAATAAAATTCTGGAGTGATAAGTGGGTGGGAAATATGGCGTTGAAGGATGCTTTTC
CAGACCTTCTTCTCATCTCTTTGAAAAAGAATGCTATTGTGACTGAATGCTGGAATGTGGAGCAAAATTATTGGAATCTTGACTTTAGAAGGGGCATTCCAGATAGAGAG
TTTGTCAGTCGGCTTGGCCTTATCTCTACGATTGACACGGTCCGAGTGGGGGATGGTGTGGATAAGGCATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCGAGGAATTCCTCCTCCATCTGCTATTTCAGGGTGCCTACCATGTTGGTAACCATTCGGTTAAGCGTAGTTGGACGGCATTGCCTCTTTATAATGGGGGCCTTGG
GATAGGATACTTGAAAGAAAGGAATAATGCTCTCCTAGCAAACAGAGGTGGGAGAATAAAATTCTGGAGTGATAAGTGGGTGGGAAATATGGCGTTGAAGGATGCTTTTC
CAGACCTTCTTCTCATCTCTTTGAAAAAGAATGCTATTGTGACTGAATGCTGGAATGTGGAGCAAAATTATTGGAATCTTGACTTTAGAAGGGGCATTCCAGATAGAGAG
TTTGTCAGTCGGCTTGGCCTTATCTCTACGATTGACACGGTCCGAGTGGGGGATGGTGTGGATAAGGCATCTTGA
Protein sequenceShow/hide protein sequence
MIEEFLLHLLFQGAYHVGNHSVKRSWTALPLYNGGLGIGYLKERNNALLANRGGRIKFWSDKWVGNMALKDAFPDLLLISLKKNAIVTECWNVEQNYWNLDFRRGIPDRE
FVSRLGLISTIDTVRVGDGVDKAS