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Spg002207 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002207
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionE3 ubiquitin-protein ligase COP1-like
Genome locationscaffold1:31762612..31773340
RNA-Seq ExpressionSpg002207
SyntenySpg002207
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KZM94204.1 hypothetical protein DCAR_017447 [Daucus carota subsp. sativus]7.6e-0933.04Show/hide
Query:  KSVATASEEPDEIEEPQLSYVRFVNNLARAKYAELLKRDFLFEKGF-----SGDLLHFLRVGITNQGWESFCSKPESVNAQVVHEFYANIEEEEGFQVIV
        +S   +++ P   +   +  V F ++ AR ++  L+ +  + E+GF      G+LL+     I  +GWESFC  PE+V   ++ EFYAN +E      +V
Subjt:  KSVATASEEPDEIEEPQLSYVRFVNNLARAKYAELLKRDFLFEKGF-----SGDLLHFLRVGITNQGWESFCSKPESVNAQVVHEFYANIEEEEGFQVIV

Query:  RGVEVDWSPNAI
        RG+ VD+S  AI
Subjt:  RGVEVDWSPNAI

PKC51568.1 hypothetical protein RhiirA1_483454, partial [Rhizophagus irregularis]4.5e-0933.93Show/hide
Query:  KSVATASEEPDEIEEPQLSYVRFVNNLARAKYAELLKRDFLFEKGF-----SGDLLHFLRVGITNQGWESFCSKPESVNAQVVHEFYANIEEEEGFQVIV
        +S   +++ P   +   +  V F ++ AR ++  L+ +  + E+GF      GDLL      I  +GWESFC  PE+V   ++ EFYAN +E      +V
Subjt:  KSVATASEEPDEIEEPQLSYVRFVNNLARAKYAELLKRDFLFEKGF-----SGDLLHFLRVGITNQGWESFCSKPESVNAQVVHEFYANIEEEEGFQVIV

Query:  RGVEVDWSPNAI
        RG+ VD+S  AI
Subjt:  RGVEVDWSPNAI

PON35554.1 hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]4.2e-0738.24Show/hide
Query:  VRFVNNLARAKYA-ELLKRDFLFEKGFSGD------LLHFLRVGITNQGWESFCSKPESVNAQVVHEFYANIEEEEGFQVIVRGVEVDWSPNAINALYNL
        V+F    A  +Y   +  R    EKGF  D       L F+   IT   W+ FC+ PE     +V EFYAN+ +     V VRGV+V WS  AINA++ L
Subjt:  VRFVNNLARAKYA-ELLKRDFLFEKGFSGD------LLHFLRVGITNQGWESFCSKPESVNAQVVHEFYANIEEEEGFQVIVRGVEVDWSPNAINALYNL

Query:  QD
         D
Subjt:  QD

PON42276.1 hypothetical protein PanWU01x14_283280 [Parasponia andersonii]4.2e-0738.24Show/hide
Query:  VRFVNNLARAKYAE-LLKRDFLFEKGFSGDLLH------FLRVGITNQGWESFCSKPESVNAQVVHEFYANIEEEEGFQVIVRGVEVDWSPNAINALYNL
        V+  +  A  +Y E +  R    EKGF GD         F+   IT   W+ FC+ PE + A +V EFYAN+   +   V VRGV+V  S  AIN +Y L
Subjt:  VRFVNNLARAKYAE-LLKRDFLFEKGFSGDLLH------FLRVGITNQGWESFCSKPESVNAQVVHEFYANIEEEEGFQVIVRGVEVDWSPNAINALYNL

Query:  QD
         D
Subjt:  QD

PON46472.1 hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]8.4e-0839.22Show/hide
Query:  VRFVNNLARAKYA-ELLKRDFLFEKGFSGD------LLHFLRVGITNQGWESFCSKPESVNAQVVHEFYANIEEEEGFQVIVRGVEVDWSPNAINALYNL
        V+F    A  +Y   +  R    EKGF  D       L F+   IT   W+ FC+ PE     +V EFYAN+ + E   V VRGV+V WS  AINA++ L
Subjt:  VRFVNNLARAKYA-ELLKRDFLFEKGFSGD------LLHFLRVGITNQGWESFCSKPESVNAQVVHEFYANIEEEEGFQVIVRGVEVDWSPNAINALYNL

Query:  QD
         D
Subjt:  QD

TrEMBL top hitse value%identityAlignment
A0A164YA28 Uncharacterized protein3.7e-0933.04Show/hide
Query:  KSVATASEEPDEIEEPQLSYVRFVNNLARAKYAELLKRDFLFEKGF-----SGDLLHFLRVGITNQGWESFCSKPESVNAQVVHEFYANIEEEEGFQVIV
        +S   +++ P   +   +  V F ++ AR ++  L+ +  + E+GF      G+LL+     I  +GWESFC  PE+V   ++ EFYAN +E      +V
Subjt:  KSVATASEEPDEIEEPQLSYVRFVNNLARAKYAELLKRDFLFEKGF-----SGDLLHFLRVGITNQGWESFCSKPESVNAQVVHEFYANIEEEEGFQVIV

Query:  RGVEVDWSPNAI
        RG+ VD+S  AI
Subjt:  RGVEVDWSPNAI

A0A2N0QKH9 Uncharacterized protein (Fragment)2.2e-0933.93Show/hide
Query:  KSVATASEEPDEIEEPQLSYVRFVNNLARAKYAELLKRDFLFEKGF-----SGDLLHFLRVGITNQGWESFCSKPESVNAQVVHEFYANIEEEEGFQVIV
        +S   +++ P   +   +  V F ++ AR ++  L+ +  + E+GF      GDLL      I  +GWESFC  PE+V   ++ EFYAN +E      +V
Subjt:  KSVATASEEPDEIEEPQLSYVRFVNNLARAKYAELLKRDFLFEKGF-----SGDLLHFLRVGITNQGWESFCSKPESVNAQVVHEFYANIEEEEGFQVIV

Query:  RGVEVDWSPNAI
        RG+ VD+S  AI
Subjt:  RGVEVDWSPNAI

A0A2P5B0K0 Uncharacterized protein2.0e-0738.24Show/hide
Query:  VRFVNNLARAKYAE-LLKRDFLFEKGFSGDLLH------FLRVGITNQGWESFCSKPESVNAQVVHEFYANIEEEEGFQVIVRGVEVDWSPNAINALYNL
        V+  +  A  +Y E +  R    EKGF GD         F+   IT   W+ FC+ PE + A +V EFYAN+   +   V VRGV+V  S  AIN +Y L
Subjt:  VRFVNNLARAKYAE-LLKRDFLFEKGFSGDLLH------FLRVGITNQGWESFCSKPESVNAQVVHEFYANIEEEEGFQVIVRGVEVDWSPNAINALYNL

Query:  QD
         D
Subjt:  QD

A0A2P5BCG4 Uncharacterized protein (Fragment)4.1e-0839.22Show/hide
Query:  VRFVNNLARAKYA-ELLKRDFLFEKGFSGD------LLHFLRVGITNQGWESFCSKPESVNAQVVHEFYANIEEEEGFQVIVRGVEVDWSPNAINALYNL
        V+F    A  +Y   +  R    EKGF  D       L F+   IT   W+ FC+ PE     +V EFYAN+ + E   V VRGV+V WS  AINA++ L
Subjt:  VRFVNNLARAKYA-ELLKRDFLFEKGFSGD------LLHFLRVGITNQGWESFCSKPESVNAQVVHEFYANIEEEEGFQVIVRGVEVDWSPNAINALYNL

Query:  QD
         D
Subjt:  QD

A0A803NJE1 Uncharacterized protein1.5e-0733.87Show/hide
Query:  ATASEEPDEIEEPQLSYVRFVNNLARAKYAELLKRDFLFEKGFSGDLLHFLRVGI-----------TNQGWESFCSKPESVNAQVVHEFYANIEEEEGFQ
        A++S  P       +   RFV++ A+ +Y +L  R F+ ++G   D L   R+GI            N+GW+ F    E  N  +  EF+AN  E E  +
Subjt:  ATASEEPDEIEEPQLSYVRFVNNLARAKYAELLKRDFLFEKGFSGDLLHFLRVGI-----------TNQGWESFCSKPESVNAQVVHEFYANIEEEEGFQ

Query:  VIVRGVEVDWSPNAINALYNLQDF
        V VRGV+V  S  AI+A+Y+L  F
Subjt:  VIVRGVEVDWSPNAINALYNLQDF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGCATGCGTTACCTGTCAGGGATTTAGCATGCTGCTATCGCATCCGGCTGGCCAAGTGGGAGTTGAATATATTGCTGAGCGACTTGAGGGAGCAAAATCTGTGTT
GGAGCAAAGCTGGGAGCAAAACTGTCACGTCACAGTTCGTGTGAGTTTGGTGCATGAGCGATCCGCCTGGGTAAGGTTCGAGCTTGATCCAGAAATCGAGAGAACATTCA
GGAGAAGAAGGAGAGAGCAGCGTAGAAACCAGAATTCAATGGCTGACGTGCCGCGTCTTCCGCAAGACCTGCGGCAGCGGAGGACGTTGCTGCCGCTGAAGAAGGCAATC
CGAGGGAACCTGAAGTACAAAACCCAGAGCAGACTGAGCCGAGAGTTACGGATACAGAGGAAGTGTGAGAGGAAAATACAAAGGAAGTTCAAGAAAAGCAGACTGAGGAT
GTGCAAGAAGAATAGGCAGAGGTTGCGCCTGAAAAAGGTAATGAGCCAGTGCAGGAGGCTCGAGTGGAGGGCAGACAAGGGCAAGAGTGTTGCTACGGCATCGGAGGAAC
CTGACGAGATAGAAGAGCCACAGTTGTCGTATGTCCGCTTCGTCAACAATCTTGCCAGAGCAAAATATGCTGAGCTGCTGAAGAGAGACTTCCTGTTTGAAAAAGGATTT
AGTGGTGATCTTCTGCATTTTCTAAGGGTCGGCATTACGAACCAAGGTTGGGAATCATTCTGTTCAAAGCCTGAATCTGTGAACGCGCAGGTAGTACACGAATTTTATGC
AAATATTGAAGAGGAAGAAGGTTTCCAAGTTATCGTTCGAGGTGTAGAAGTTGATTGGAGTCCTAATGCTATTAACGCCCTGTACAACCTTCAAGATTTCCCCCACGCAG
GATACAATGAGATGGCTGTAGCACCATCTAATGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTGCATGCGTTACCTGTCAGGGATTTAGCATGCTGCTATCGCATCCGGCTGGCCAAGTGGGAGTTGAATATATTGCTGAGCGACTTGAGGGAGCAAAATCTGTGTT
GGAGCAAAGCTGGGAGCAAAACTGTCACGTCACAGTTCGTGTGAGTTTGGTGCATGAGCGATCCGCCTGGGTAAGGTTCGAGCTTGATCCAGAAATCGAGAGAACATTCA
GGAGAAGAAGGAGAGAGCAGCGTAGAAACCAGAATTCAATGGCTGACGTGCCGCGTCTTCCGCAAGACCTGCGGCAGCGGAGGACGTTGCTGCCGCTGAAGAAGGCAATC
CGAGGGAACCTGAAGTACAAAACCCAGAGCAGACTGAGCCGAGAGTTACGGATACAGAGGAAGTGTGAGAGGAAAATACAAAGGAAGTTCAAGAAAAGCAGACTGAGGAT
GTGCAAGAAGAATAGGCAGAGGTTGCGCCTGAAAAAGGTAATGAGCCAGTGCAGGAGGCTCGAGTGGAGGGCAGACAAGGGCAAGAGTGTTGCTACGGCATCGGAGGAAC
CTGACGAGATAGAAGAGCCACAGTTGTCGTATGTCCGCTTCGTCAACAATCTTGCCAGAGCAAAATATGCTGAGCTGCTGAAGAGAGACTTCCTGTTTGAAAAAGGATTT
AGTGGTGATCTTCTGCATTTTCTAAGGGTCGGCATTACGAACCAAGGTTGGGAATCATTCTGTTCAAAGCCTGAATCTGTGAACGCGCAGGTAGTACACGAATTTTATGC
AAATATTGAAGAGGAAGAAGGTTTCCAAGTTATCGTTCGAGGTGTAGAAGTTGATTGGAGTCCTAATGCTATTAACGCCCTGTACAACCTTCAAGATTTCCCCCACGCAG
GATACAATGAGATGGCTGTAGCACCATCTAATGAGTAG
Protein sequenceShow/hide protein sequence
MSACVTCQGFSMLLSHPAGQVGVEYIAERLEGAKSVLEQSWEQNCHVTVRVSLVHERSAWVRFELDPEIERTFRRRRREQRRNQNSMADVPRLPQDLRQRRTLLPLKKAI
RGNLKYKTQSRLSRELRIQRKCERKIQRKFKKSRLRMCKKNRQRLRLKKVMSQCRRLEWRADKGKSVATASEEPDEIEEPQLSYVRFVNNLARAKYAELLKRDFLFEKGF
SGDLLHFLRVGITNQGWESFCSKPESVNAQVVHEFYANIEEEEGFQVIVRGVEVDWSPNAINALYNLQDFPHAGYNEMAVAPSNE