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Spg002212 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002212
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold1:32068393..32072967
RNA-Seq ExpressionSpg002212
SyntenySpg002212
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]9.0e-2349.32Show/hide
Query:  STGFSSKPGGSLVFSGVLSIWGCTSRIR------GSIWPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVELY
        STGFSSKPGG LVFS  LSI       +         WPRGNR  LQTGELDK                  VEIELP+PDTLPTSAESS ++SSTW+ELY
Subjt:  STGFSSKPGGSLVFSGVLSIWGCTSRIR------GSIWPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVELY

Query:  IESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLA
         ESVH+  + +   + +  S          +  DDV WLHAIFRAK A
Subjt:  IESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLA

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]3.4e-2252.31Show/hide
Query:  EKSATSTGFSSKPGGSLVFSGVLSIWGCTSRIRGSIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----
        E    ST F SK GG LVFS  L           SI PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+++SSTW+ELY ESVH+  + +       
Subjt:  EKSATSTGFSSKPGGSLVFSGVLSIWGCTSRIRGSIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----

Query:  ------EGQRVSLEEDDVRWLHAIFRAKLA
              EG    +  DD+ WLHA+F AK A
Subjt:  ------EGQRVSLEEDDVRWLHAIFRAKLA

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]1.4e-2048.41Show/hide
Query:  STGFSSKPGGSLVFSGVLSIWGCTS-----------RIRG-----SIWPRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRTS
        STGFSSKPGG LVFS  LSI                RI       S  PRGNR SLQT ELDKT               V IELPVPD LPTSAESS ++
Subjt:  STGFSSKPGGSLVFSGVLSIWGCTS-----------RIRG-----SIWPRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRTS

Query:  SSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAK
        SSTW+ELY ESVH+             ++++FNV  G    +  DDV WLHA+FRAK
Subjt:  SSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAK

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]5.3e-2351.75Show/hide
Query:  STGFSSKPGGSLVFSGVLSIWGCTSRIRGSIW--PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        STGFSSKPGG LV S  LSI     ++   ++  PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS ++SSTW+ELY ESVH+
Subjt:  STGFSSKPGGSLVFSGVLSIWGCTSRIRGSIW--PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIESVHI

Query:  -------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAK
                     ++++FNV  G    +  DDV WLHA+FRAK
Subjt:  -------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAK

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]9.0e-2349.32Show/hide
Query:  STGFSSKPGGSLVFSGVLSIWGCTSRIR------GSIWPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVELY
        STGFSSKPGG LVFS  LSI       +         WPRGNR  LQTGELDK                  VEIELP+PDTLPTSAESS ++SSTW+ELY
Subjt:  STGFSSKPGGSLVFSGVLSIWGCTSRIR------GSIWPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVELY

Query:  IESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLA
         ESVH+  + +   + +  S          +  DDV WLHAIFRAK A
Subjt:  IESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLA

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein4.3e-2349.32Show/hide
Query:  STGFSSKPGGSLVFSGVLSIWGCTSRIR------GSIWPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVELY
        STGFSSKPGG LVFS  LSI       +         WPRGNR  LQTGELDK                  VEIELP+PDTLPTSAESS ++SSTW+ELY
Subjt:  STGFSSKPGGSLVFSGVLSIWGCTSRIR------GSIWPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVELY

Query:  IESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLA
         ESVH+  + +   + +  S          +  DDV WLHAIFRAK A
Subjt:  IESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLA

A0A5A7UAH6 CCHC-type domain-containing protein1.7e-2252.31Show/hide
Query:  EKSATSTGFSSKPGGSLVFSGVLSIWGCTSRIRGSIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----
        E    ST F SK GG LVFS  L           SI PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+++SSTW+ELY ESVH+  + +       
Subjt:  EKSATSTGFSSKPGGSLVFSGVLSIWGCTSRIRGSIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----

Query:  ------EGQRVSLEEDDVRWLHAIFRAKLA
              EG    +  DD+ WLHA+F AK A
Subjt:  ------EGQRVSLEEDDVRWLHAIFRAKLA

A0A5A7UT17 CCHC-type domain-containing protein6.9e-2148.41Show/hide
Query:  STGFSSKPGGSLVFSGVLSIWGCTS-----------RIRG-----SIWPRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRTS
        STGFSSKPGG LVFS  LSI                RI       S  PRGNR SLQT ELDKT               V IELPVPD LPTSAESS ++
Subjt:  STGFSSKPGGSLVFSGVLSIWGCTS-----------RIRG-----SIWPRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRTS

Query:  SSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAK
        SSTW+ELY ESVH+             ++++FNV  G    +  DDV WLHA+FRAK
Subjt:  SSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAK

A0A5D3CJX3 CCHC-type domain-containing protein2.5e-2351.75Show/hide
Query:  STGFSSKPGGSLVFSGVLSIWGCTSRIRGSIW--PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        STGFSSKPGG LV S  LSI     ++   ++  PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS ++SSTW+ELY ESVH+
Subjt:  STGFSSKPGGSLVFSGVLSIWGCTSRIRGSIW--PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIESVHI

Query:  -------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAK
                     ++++FNV  G    +  DDV WLHA+FRAK
Subjt:  -------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAK

A0A5D3DR18 Gag/pol protein4.3e-2349.32Show/hide
Query:  STGFSSKPGGSLVFSGVLSIWGCTSRIR------GSIWPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVELY
        STGFSSKPGG LVFS  LSI       +         WPRGNR  LQTGELDK                  VEIELP+PDTLPTSAESS ++SSTW+ELY
Subjt:  STGFSSKPGGSLVFSGVLSIWGCTSRIR------GSIWPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVELY

Query:  IESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLA
         ESVH+  + +   + +  S          +  DDV WLHAIFRAK A
Subjt:  IESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACGGCCCACTTTGTATTTCATACAAACGCCATGATCCAACGCGTTCGTGTAGGAGACATAAAATATGTCTGCAGTGAGAAGAGTGCAACTAGCACAGGATTTTC
GAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTTGGGGGTGTACAAGTCGAATCAGAGGCTCTATTTGGCCAAGAGGAAATAGGTCGAGTCTACAAA
CCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATT
GAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGC
AGCGAAGGATTTCCAAGAGGTTGCTGCGTTTTCAACTGTTAGGAGCATTGTTGGCGAAAATCGGTCAAATCTACAACGAAGGTTTGTAACGGCGGTAACATCAGATAAAC
CCGCAGCGTTGGGACTCTGCGTTGCAAGCGTCTCGACGTTGTCTCGATGTGCGGCGCGCGCAATATGGTTTCGCGAAAGGGCGATTCAACGGCTGGGCGGTCCGGTTCGC
ACGGTCTGGCTGGGCTGGGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATACGGCCCACTTTGTATTTCATACAAACGCCATGATCCAACGCGTTCGTGTAGGAGACATAAAATATGTCTGCAGTGAGAAGAGTGCAACTAGCACAGGATTTTC
GAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTTGGGGGTGTACAAGTCGAATCAGAGGCTCTATTTGGCCAAGAGGAAATAGGTCGAGTCTACAAA
CCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATT
GAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGC
AGCGAAGGATTTCCAAGAGGTTGCTGCGTTTTCAACTGTTAGGAGCATTGTTGGCGAAAATCGGTCAAATCTACAACGAAGGTTTGTAACGGCGGTAACATCAGATAAAC
CCGCAGCGTTGGGACTCTGCGTTGCAAGCGTCTCGACGTTGTCTCGATGTGCGGCGCGCGCAATATGGTTTCGCGAAAGGGCGATTCAACGGCTGGGCGGTCCGGTTCGC
ACGGTCTGGCTGGGCTGGGACTGA
Protein sequenceShow/hide protein sequence
MDTAHFVFHTNAMIQRVRVGDIKYVCSEKSATSTGFSSKPGGSLVFSGVLSIWGCTSRIRGSIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYI
ESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAAKDFQEVAAFSTVRSIVGENRSNLQRRFVTAVTSDKPAALGLCVASVSTLSRCAARAIWFRERAIQRLGGPVR
TVWLGWD