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Spg002245 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002245
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold1:32898442..32901124
RNA-Seq ExpressionSpg002245
SyntenySpg002245
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]6.4e-3552.86Show/hide
Query:  MQSQPLQDLRSTCQPLVFIRFEL-HRRNQESTGFSSKAGGSLV---------------------SCRV--FENEEFDVPRGNRSSLQTGELDKTPEAIWY
        MQSQPLQ+L +T   L F+ F L +    +STGFSSK GG LV                       R+   EN +  +PRGNR SLQT ELDKT      
Subjt:  MQSQPLQDLRSTCQPLVFIRFEL-HRRNQESTGFSSKAGGSLV---------------------SCRV--FENEEFDVPRGNRSSLQTGELDKTPEAIWY

Query:  RVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVF
               PLSTLSVLRDN+ V  IELPVPD LPTSAESS S+SS                 F NQVMS LH V    FNVSVGSTGIVRGDDVCWLHAVF
Subjt:  RVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVF

Query:  RAKLAGGPGG
        RAK  GGPGG
Subjt:  RAKLAGGPGG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]8.3e-3552.43Show/hide
Query:  MQSQPLQDLRSTCQPLVFIRFELHRRNQESTGFSSKAGGSLVSCRVF-------------------ENEEFDVP-RGNRSSLQTGELDKTPEAIWYRVHT
        MQSQPLQ+L +T                  TGFSSK GG LV                        ++ ++DV  RGNRSSLQ+GELD T          
Subjt:  MQSQPLQDLRSTCQPLVFIRFELHRRNQESTGFSSKAGGSLVSCRVF-------------------ENEEFDVP-RGNRSSLQTGELDKTPEAIWYRVHT

Query:  GYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKL
           PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SS                YF NQVMS LH V    F+V VGSTGIVRGDDVCWLHAVFRAK 
Subjt:  GYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKL

Query:  AGGPGG
         GGPGG
Subjt:  AGGPGG

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]9.5e-3957.75Show/hide
Query:  MQSQPLQDLRSTCQPLVFIRFEL-HRRNQESTGFSSKAGGSLVSCRV----------------FENEEFDVPRGNRSSLQTGELDKTPEAIWYRVHTGYI
        MQS PL++L +T   L F+ F L ++   +STGFSSK G  LV                     E+ +   PRGN+ SLQTGELDKT             
Subjt:  MQSQPLQDLRSTCQPLVFIRFEL-HRRNQESTGFSSKAGGSLVSCRV----------------FENEEFDVPRGNRSSLQTGELDKTPEAIWYRVHTGYI

Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        PLST SVL DNDAVVEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V    FNVSVGSTGIVRGDDVC LH VFRAK AGGPGG
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.2e-3656.92Show/hide
Query:  MQSQPLQDLRSTCQPLVFIRFEL-HRRNQESTGFSSKAGGSLV---SCRVFENEEFDV-----PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVL
        MQSQPLQ+L +T   L F+ F L +    +STGFSSK GG LV   +  + E  + +      PRGNR SLQTGELDKT              LSTLSVL
Subjt:  MQSQPLQDLRSTCQPLVFIRFEL-HRRNQESTGFSSKAGGSLV---SCRVFENEEFDV-----PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVL

Query:  RDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        RDN+AV  IELPVPDTLPTSAESS S+SS                 F NQVMS LH V    FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  RDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]8.3e-3552.43Show/hide
Query:  MQSQPLQDLRSTCQPLVFIRFELHRRNQESTGFSSKAGGSLVSCRVF-------------------ENEEFDVP-RGNRSSLQTGELDKTPEAIWYRVHT
        MQSQPLQ+L +T                  TGFSSK GG LV                        ++ ++DV  RGNRSSLQ+GELD T          
Subjt:  MQSQPLQDLRSTCQPLVFIRFELHRRNQESTGFSSKAGGSLVSCRVF-------------------ENEEFDVP-RGNRSSLQTGELDKTPEAIWYRVHT

Query:  GYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKL
           PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SS                YF NQVMS LH V    F+V VGSTGIVRGDDVCWLHAVFRAK 
Subjt:  GYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKL

Query:  AGGPGG
         GGPGG
Subjt:  AGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7UT17 CCHC-type domain-containing protein3.1e-3552.86Show/hide
Query:  MQSQPLQDLRSTCQPLVFIRFEL-HRRNQESTGFSSKAGGSLV---------------------SCRV--FENEEFDVPRGNRSSLQTGELDKTPEAIWY
        MQSQPLQ+L +T   L F+ F L +    +STGFSSK GG LV                       R+   EN +  +PRGNR SLQT ELDKT      
Subjt:  MQSQPLQDLRSTCQPLVFIRFEL-HRRNQESTGFSSKAGGSLV---------------------SCRV--FENEEFDVPRGNRSSLQTGELDKTPEAIWY

Query:  RVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVF
               PLSTLSVLRDN+ V  IELPVPD LPTSAESS S+SS                 F NQVMS LH V    FNVSVGSTGIVRGDDVCWLHAVF
Subjt:  RVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVF

Query:  RAKLAGGPGG
        RAK  GGPGG
Subjt:  RAKLAGGPGG

A0A5A7V9N3 Reverse transcriptase4.0e-3552.43Show/hide
Query:  MQSQPLQDLRSTCQPLVFIRFELHRRNQESTGFSSKAGGSLVSCRVF-------------------ENEEFDVP-RGNRSSLQTGELDKTPEAIWYRVHT
        MQSQPLQ+L +T                  TGFSSK GG LV                        ++ ++DV  RGNRSSLQ+GELD T          
Subjt:  MQSQPLQDLRSTCQPLVFIRFELHRRNQESTGFSSKAGGSLVSCRVF-------------------ENEEFDVP-RGNRSSLQTGELDKTPEAIWYRVHT

Query:  GYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKL
           PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SS                YF NQVMS LH V    F+V VGSTGIVRGDDVCWLHAVFRAK 
Subjt:  GYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKL

Query:  AGGPGG
         GGPGG
Subjt:  AGGPGG

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein4.6e-3957.75Show/hide
Query:  MQSQPLQDLRSTCQPLVFIRFEL-HRRNQESTGFSSKAGGSLVSCRV----------------FENEEFDVPRGNRSSLQTGELDKTPEAIWYRVHTGYI
        MQS PL++L +T   L F+ F L ++   +STGFSSK G  LV                     E+ +   PRGN+ SLQTGELDKT             
Subjt:  MQSQPLQDLRSTCQPLVFIRFEL-HRRNQESTGFSSKAGGSLVSCRV----------------FENEEFDVPRGNRSSLQTGELDKTPEAIWYRVHTGYI

Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        PLST SVL DNDAVVEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V    FNVSVGSTGIVRGDDVC LH VFRAK AGGPGG
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5D3CJX3 CCHC-type domain-containing protein5.6e-3756.92Show/hide
Query:  MQSQPLQDLRSTCQPLVFIRFEL-HRRNQESTGFSSKAGGSLV---SCRVFENEEFDV-----PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVL
        MQSQPLQ+L +T   L F+ F L +    +STGFSSK GG LV   +  + E  + +      PRGNR SLQTGELDKT              LSTLSVL
Subjt:  MQSQPLQDLRSTCQPLVFIRFEL-HRRNQESTGFSSKAGGSLV---SCRVFENEEFDV-----PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVL

Query:  RDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        RDN+AV  IELPVPDTLPTSAESS S+SS                 F NQVMS LH V    FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  RDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5D3DSY7 Putative Retrotransposon protein4.0e-3552.43Show/hide
Query:  MQSQPLQDLRSTCQPLVFIRFELHRRNQESTGFSSKAGGSLVSCRVF-------------------ENEEFDVP-RGNRSSLQTGELDKTPEAIWYRVHT
        MQSQPLQ+L +T                  TGFSSK GG LV                        ++ ++DV  RGNRSSLQ+GELD T          
Subjt:  MQSQPLQDLRSTCQPLVFIRFELHRRNQESTGFSSKAGGSLVSCRVF-------------------ENEEFDVP-RGNRSSLQTGELDKTPEAIWYRVHT

Query:  GYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKL
           PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SS                YF NQVMS LH V    F+V VGSTGIVRGDDVCWLHAVFRAK 
Subjt:  GYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKL

Query:  AGGPGG
         GGPGG
Subjt:  AGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGAGCACAGGATTTTCGAGCAAAGC
AGGAGGATCTCTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACACCCGAGGCTA
TATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACG
TCTGCTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAATGTTTCAGTAGGGTCAACAGGGAT
CGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGAGCTAAGCTAGCAGGTGGTCCGGGAGGGGATGACATGGCTGATGACGTGGCACCCCGTGGACGGAAGA
GATCATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGAGCACAGGATTTTCGAGCAAAGC
AGGAGGATCTCTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACACCCGAGGCTA
TATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACG
TCTGCTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAATGTTTCAGTAGGGTCAACAGGGAT
CGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGAGCTAAGCTAGCAGGTGGTCCGGGAGGGGATGACATGGCTGATGACGTGGCACCCCGTGGACGGAAGA
GATCATGA
Protein sequenceShow/hide protein sequence
MQSQPLQDLRSTCQPLVFIRFELHRRNQESTGFSSKAGGSLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPT
SAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDDMADDVAPRGRKRS