; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg002257 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002257
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold1:32151252..32152417
RNA-Seq ExpressionSpg002257
SyntenySpg002257
Gene Ontology termsGO:0008152 - metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.7e-2330.6Show/hide
Query:  IIEKIERRLSTWGATYTSKGGRLTLFQATLSHLPTYYLSLFQLPVKIGKEIERLFRNYLWKNST-------NEHGLSRCKEAPIKDVWNNDHNYWDLRLG
        +++KI+++LS+W  +  SKGGR+TL  +TL  LP Y +      V  G++I     N  W  +            LS  K+  +KD WN   N W L + 
Subjt:  IIEKIERRLSTWGATYTSKGGRLTLFQATLSHLPTYYLSLFQLPVKIGKEIERLFRNYLWKNST-------NEHGLSRCKEAPIKDVWNNDHNYWDLRLG

Query:  RNLKDVEASEW-----------------------------------------------------ATIWKDNYP-KIKIFLWELTHEAINTKYVLQRRMPS
        R L+D E + W                                                      T+WK  +P K K F+W L H  INT   LQ+R+P+
Subjt:  RNLKDVEASEW-----------------------------------------------------ATIWKDNYP-KIKIFLWELTHEAINTKYVLQRRMPS

Query:  VALSPEWCSWCKAEDESQNHIFIHCPFAKQFW
         ALSP WC  C    E  NH+FIHCP+++Q W
Subjt:  VALSPEWCSWCKAEDESQNHIFIHCPFAKQFW

RVW62475.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]4.6e-2430.7Show/hide
Query:  IIEKIERRLSTWGATYTSKGGRLTLFQATLSHLPTYYLSLFQLPVKIGKEIERLFRNYLWKNSTNEHGLSRCKEAPIKDVWNNDHNYWDLRLGRNLKDVE
        ++E+I RRL  W   Y S GGR+TL Q+ LSH+P+Y+LSLF++P  I  +IE++ RN++W  +    G  +     I  ++    N WD  +   ++   
Subjt:  IIEKIERRLSTWGATYTSKGGRLTLFQATLSHLPTYYLSLFQLPVKIGKEIERLFRNYLWKNSTNEHGLSRCKEAPIKDVWNNDHNYWDLRLGRNLKDVE

Query:  ASEWATI----------------WKDNYP-KIKIFLWELTHEAINTKYVLQRRMPSVALSPEWCSWCKAEDESQNHIFIHCPFAKQFWYRIMNSFRLVFG
           W  I                W    P K+K   W + H  +NT   LQ R P  +L P+WC  CK   ES + +F+HCP     W ++     L + 
Subjt:  ASEWATI----------------WKDNYP-KIKIFLWELTHEAINTKYVLQRRMPSVALSPEWCSWCKAEDESQNHIFIHCPFAKQFWYRIMNSFRLVFG

Query:  FSRKYQRLSLHYFVG
          R ++ + +  F G
Subjt:  FSRKYQRLSLHYFVG

RVW93876.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]2.7e-2431.43Show/hide
Query:  IIEKIERRLSTWGATYTSKGGRLTLFQATLSHLPTYYLSLFQLPVKIGKEIERLFRNYLWKNS---TNEH-----GLSRCKE------------------
        ++E+I RRL  W   + S GGR+TL Q  LSH+P+Y+LSLF++PV I  +IE++ R++LW  +     +H      +SR KE                  
Subjt:  IIEKIERRLSTWGATYTSKGGRLTLFQATLSHLPTYYLSLFQLPVKIGKEIERLFRNYLWKNS---TNEH-----GLSRCKE------------------

Query:  ---------------APIKDVWNNDHNYWDLRL-----GRNLKDVEASEWATIWKDNYP-KIKIFLWELTHEAINTKYVLQRRMPSVALSPEWCSWCKAE
                         I  ++    N WD  +      R      A  +  +W    P K+K   W + H  +NT   LQ R P  AL P+WC  CK  
Subjt:  ---------------APIKDVWNNDHNYWDLRL-----GRNLKDVEASEWATIWKDNYP-KIKIFLWELTHEAINTKYVLQRRMPSVALSPEWCSWCKAE

Query:  DESQNHIFIHCPFAKQFWYRIMNSFRLVFGFSRKYQRLSLHYFVG
         ES +HIF+HCP     WYR+ N   LV+   R  + + +  F G
Subjt:  DESQNHIFIHCPFAKQFWYRIMNSFRLVFGFSRKYQRLSLHYFVG

TYK10356.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.9e-2628.52Show/hide
Query:  IIEKIERRLSTWGATYTSKGGRLTLFQATLSHLPTYYLSLFQLPVKIGKEIERLFRNYLWKNSTNEH---------------------------------
        I EKI ++L++W  +  SKGG++TL ++TL+ LPTY LS+F+ PV   K IE+ +RN+ WKN +  H                                 
Subjt:  IIEKIERRLSTWGATYTSKGGRLTLFQATLSHLPTYYLSLFQLPVKIGKEIERLFRNYLWKNSTNEH---------------------------------

Query:  ---GLSRCKEAPIKDVWNNDHNYWDLRLGRNLKDVEASEWA------------------------------------------------------TIWKD
            LS  ++  IKD+WN     WDL+  R L+D E   WA                                                       +WK 
Subjt:  ---GLSRCKEAPIKDVWNNDHNYWDLRLGRNLKDVEASEWA------------------------------------------------------TIWKD

Query:  NYP-KIKIFLWELTHEAINTKYVLQRRMPSVALSPEWCSWCKAEDESQNHIFIHCPFAKQFWYRIMNSFR
        + P K K F+W L ++++NT   L +RMP++   P WC  CK  +E + H+FI CP AK  W  I +  +
Subjt:  NYP-KIKIFLWELTHEAINTKYVLQRRMPSVALSPEWCSWCKAEDESQNHIFIHCPFAKQFWYRIMNSFR

TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.7e-2330.6Show/hide
Query:  IIEKIERRLSTWGATYTSKGGRLTLFQATLSHLPTYYLSLFQLPVKIGKEIERLFRNYLWKNST-------NEHGLSRCKEAPIKDVWNNDHNYWDLRLG
        +++KI+++LS+W  +  SKGGR+TL  +TL  LP Y +      V  G++I     N  W  +            LS  K+  +KD WN   N W L + 
Subjt:  IIEKIERRLSTWGATYTSKGGRLTLFQATLSHLPTYYLSLFQLPVKIGKEIERLFRNYLWKNST-------NEHGLSRCKEAPIKDVWNNDHNYWDLRLG

Query:  RNLKDVEASEW-----------------------------------------------------ATIWKDNYP-KIKIFLWELTHEAINTKYVLQRRMPS
        R L+D E + W                                                      T+WK  +P K K F+W L H  INT   LQ+R+P+
Subjt:  RNLKDVEASEW-----------------------------------------------------ATIWKDNYP-KIKIFLWELTHEAINTKYVLQRRMPS

Query:  VALSPEWCSWCKAEDESQNHIFIHCPFAKQFW
         ALSP WC  C    E  NH+FIHCP+++Q W
Subjt:  VALSPEWCSWCKAEDESQNHIFIHCPFAKQFW

TrEMBL top hitse value%identityAlignment
A0A438FRA1 Transposon TX1 uncharacterized 149 kDa protein2.2e-2430.7Show/hide
Query:  IIEKIERRLSTWGATYTSKGGRLTLFQATLSHLPTYYLSLFQLPVKIGKEIERLFRNYLWKNSTNEHGLSRCKEAPIKDVWNNDHNYWDLRLGRNLKDVE
        ++E+I RRL  W   Y S GGR+TL Q+ LSH+P+Y+LSLF++P  I  +IE++ RN++W  +    G  +     I  ++    N WD  +   ++   
Subjt:  IIEKIERRLSTWGATYTSKGGRLTLFQATLSHLPTYYLSLFQLPVKIGKEIERLFRNYLWKNSTNEHGLSRCKEAPIKDVWNNDHNYWDLRLGRNLKDVE

Query:  ASEWATI----------------WKDNYP-KIKIFLWELTHEAINTKYVLQRRMPSVALSPEWCSWCKAEDESQNHIFIHCPFAKQFWYRIMNSFRLVFG
           W  I                W    P K+K   W + H  +NT   LQ R P  +L P+WC  CK   ES + +F+HCP     W ++     L + 
Subjt:  ASEWATI----------------WKDNYP-KIKIFLWELTHEAINTKYVLQRRMPSVALSPEWCSWCKAEDESQNHIFIHCPFAKQFWYRIMNSFRLVFG

Query:  FSRKYQRLSLHYFVG
          R ++ + +  F G
Subjt:  FSRKYQRLSLHYFVG

A0A438IAY6 Transposon TX1 uncharacterized 149 kDa protein1.3e-2431.43Show/hide
Query:  IIEKIERRLSTWGATYTSKGGRLTLFQATLSHLPTYYLSLFQLPVKIGKEIERLFRNYLWKNS---TNEH-----GLSRCKE------------------
        ++E+I RRL  W   + S GGR+TL Q  LSH+P+Y+LSLF++PV I  +IE++ R++LW  +     +H      +SR KE                  
Subjt:  IIEKIERRLSTWGATYTSKGGRLTLFQATLSHLPTYYLSLFQLPVKIGKEIERLFRNYLWKNS---TNEH-----GLSRCKE------------------

Query:  ---------------APIKDVWNNDHNYWDLRL-----GRNLKDVEASEWATIWKDNYP-KIKIFLWELTHEAINTKYVLQRRMPSVALSPEWCSWCKAE
                         I  ++    N WD  +      R      A  +  +W    P K+K   W + H  +NT   LQ R P  AL P+WC  CK  
Subjt:  ---------------APIKDVWNNDHNYWDLRL-----GRNLKDVEASEWATIWKDNYP-KIKIFLWELTHEAINTKYVLQRRMPSVALSPEWCSWCKAE

Query:  DESQNHIFIHCPFAKQFWYRIMNSFRLVFGFSRKYQRLSLHYFVG
         ES +HIF+HCP     WYR+ N   LV+   R  + + +  F G
Subjt:  DESQNHIFIHCPFAKQFWYRIMNSFRLVFGFSRKYQRLSLHYFVG

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein8.5e-2430.6Show/hide
Query:  IIEKIERRLSTWGATYTSKGGRLTLFQATLSHLPTYYLSLFQLPVKIGKEIERLFRNYLWKNST-------NEHGLSRCKEAPIKDVWNNDHNYWDLRLG
        +++KI+++LS+W  +  SKGGR+TL  +TL  LP Y +      V  G++I     N  W  +            LS  K+  +KD WN   N W L + 
Subjt:  IIEKIERRLSTWGATYTSKGGRLTLFQATLSHLPTYYLSLFQLPVKIGKEIERLFRNYLWKNST-------NEHGLSRCKEAPIKDVWNNDHNYWDLRLG

Query:  RNLKDVEASEW-----------------------------------------------------ATIWKDNYP-KIKIFLWELTHEAINTKYVLQRRMPS
        R L+D E + W                                                      T+WK  +P K K F+W L H  INT   LQ+R+P+
Subjt:  RNLKDVEASEW-----------------------------------------------------ATIWKDNYP-KIKIFLWELTHEAINTKYVLQRRMPS

Query:  VALSPEWCSWCKAEDESQNHIFIHCPFAKQFW
         ALSP WC  C    E  NH+FIHCP+++Q W
Subjt:  VALSPEWCSWCKAEDESQNHIFIHCPFAKQFW

A0A5D3CJ08 LINE-1 retrotransposable element ORF2 protein2.4e-2628.52Show/hide
Query:  IIEKIERRLSTWGATYTSKGGRLTLFQATLSHLPTYYLSLFQLPVKIGKEIERLFRNYLWKNSTNEH---------------------------------
        I EKI ++L++W  +  SKGG++TL ++TL+ LPTY LS+F+ PV   K IE+ +RN+ WKN +  H                                 
Subjt:  IIEKIERRLSTWGATYTSKGGRLTLFQATLSHLPTYYLSLFQLPVKIGKEIERLFRNYLWKNSTNEH---------------------------------

Query:  ---GLSRCKEAPIKDVWNNDHNYWDLRLGRNLKDVEASEWA------------------------------------------------------TIWKD
            LS  ++  IKD+WN     WDL+  R L+D E   WA                                                       +WK 
Subjt:  ---GLSRCKEAPIKDVWNNDHNYWDLRLGRNLKDVEASEWA------------------------------------------------------TIWKD

Query:  NYP-KIKIFLWELTHEAINTKYVLQRRMPSVALSPEWCSWCKAEDESQNHIFIHCPFAKQFWYRIMNSFR
        + P K K F+W L ++++NT   L +RMP++   P WC  CK  +E + H+FI CP AK  W  I +  +
Subjt:  NYP-KIKIFLWELTHEAINTKYVLQRRMPSVALSPEWCSWCKAEDESQNHIFIHCPFAKQFWYRIMNSFR

A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein8.5e-2430.6Show/hide
Query:  IIEKIERRLSTWGATYTSKGGRLTLFQATLSHLPTYYLSLFQLPVKIGKEIERLFRNYLWKNST-------NEHGLSRCKEAPIKDVWNNDHNYWDLRLG
        +++KI+++LS+W  +  SKGGR+TL  +TL  LP Y +      V  G++I     N  W  +            LS  K+  +KD WN   N W L + 
Subjt:  IIEKIERRLSTWGATYTSKGGRLTLFQATLSHLPTYYLSLFQLPVKIGKEIERLFRNYLWKNST-------NEHGLSRCKEAPIKDVWNNDHNYWDLRLG

Query:  RNLKDVEASEW-----------------------------------------------------ATIWKDNYP-KIKIFLWELTHEAINTKYVLQRRMPS
        R L+D E + W                                                      T+WK  +P K K F+W L H  INT   LQ+R+P+
Subjt:  RNLKDVEASEW-----------------------------------------------------ATIWKDNYP-KIKIFLWELTHEAINTKYVLQRRMPS

Query:  VALSPEWCSWCKAEDESQNHIFIHCPFAKQFW
         ALSP WC  C    E  NH+FIHCP+++Q W
Subjt:  VALSPEWCSWCKAEDESQNHIFIHCPFAKQFW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.0e-0535Show/hide
Query:  IIEKIERRLSTWGATYTSKGGRLTLFQATLSHLPTYYLSLFQLPVKIGKEIERLFRNYLW
        ++EKI  R+  W A + S  GRL L  + +  L  +++S F+LP    KEI+ +  ++LW
Subjt:  IIEKIERRLSTWGATYTSKGGRLTLFQATLSHLPTYYLSLFQLPVKIGKEIERLFRNYLW

AT3G25270.1 Ribonuclease H-like superfamily protein2.1e-0642.65Show/hide
Query:  ATIWK-DNYPKIKIFLWELTHEAINTKYVLQRRMPSVALSPEWCSWCKAEDESQNHIFIHCPFAKQFW
        A IWK    PKIK FLW+L   A+ T   L+RR   +   P+ C  C  EDE+  H+F  C +A+Q W
Subjt:  ATIWK-DNYPKIKIFLWELTHEAINTKYVLQRRMPSVALSPEWCSWCKAEDESQNHIFIHCPFAKQFW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGATTTTGGTCTTTATCATTGAGAAAATTGAGAGAAGACTATCAACATGGGGAGCTACATATACATCCAAGGGAGGTAGACTCACTCTTTTTCAGGCTACTCTTTC
TCATCTCCCTACATATTACCTTTCTTTGTTCCAGCTACCAGTCAAGATTGGAAAGGAGATAGAAAGATTGTTTAGAAATTATTTATGGAAAAATAGTACTAATGAACATG
GATTGTCTCGATGCAAAGAAGCCCCGATTAAAGATGTTTGGAACAATGATCACAACTACTGGGACCTTAGACTGGGGAGGAACTTGAAAGATGTTGAAGCATCCGAATGG
GCAACCATATGGAAGGACAATTACCCAAAGATCAAAATTTTCTTATGGGAGCTCACTCACGAGGCCATTAACACCAAATATGTCCTCCAAAGACGTATGCCTTCTGTGGC
ATTATCCCCCGAGTGGTGCTCTTGGTGCAAAGCGGAAGATGAATCTCAGAATCACATTTTTATTCACTGCCCATTTGCTAAACAATTTTGGTATAGAATTATGAACTCTT
TTCGGCTAGTATTTGGCTTCTCCAGGAAATATCAAAGATTATCTCTACACTATTTTGTTGGGGCATCCTTTCAAGAACAAGAAGTTTGTGCTATGGTTGAATATCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGATTTTGGTCTTTATCATTGAGAAAATTGAGAGAAGACTATCAACATGGGGAGCTACATATACATCCAAGGGAGGTAGACTCACTCTTTTTCAGGCTACTCTTTC
TCATCTCCCTACATATTACCTTTCTTTGTTCCAGCTACCAGTCAAGATTGGAAAGGAGATAGAAAGATTGTTTAGAAATTATTTATGGAAAAATAGTACTAATGAACATG
GATTGTCTCGATGCAAAGAAGCCCCGATTAAAGATGTTTGGAACAATGATCACAACTACTGGGACCTTAGACTGGGGAGGAACTTGAAAGATGTTGAAGCATCCGAATGG
GCAACCATATGGAAGGACAATTACCCAAAGATCAAAATTTTCTTATGGGAGCTCACTCACGAGGCCATTAACACCAAATATGTCCTCCAAAGACGTATGCCTTCTGTGGC
ATTATCCCCCGAGTGGTGCTCTTGGTGCAAAGCGGAAGATGAATCTCAGAATCACATTTTTATTCACTGCCCATTTGCTAAACAATTTTGGTATAGAATTATGAACTCTT
TTCGGCTAGTATTTGGCTTCTCCAGGAAATATCAAAGATTATCTCTACACTATTTTGTTGGGGCATCCTTTCAAGAACAAGAAGTTTGTGCTATGGTTGAATATCTCTAG
Protein sequenceShow/hide protein sequence
MWILVFIIEKIERRLSTWGATYTSKGGRLTLFQATLSHLPTYYLSLFQLPVKIGKEIERLFRNYLWKNSTNEHGLSRCKEAPIKDVWNNDHNYWDLRLGRNLKDVEASEW
ATIWKDNYPKIKIFLWELTHEAINTKYVLQRRMPSVALSPEWCSWCKAEDESQNHIFIHCPFAKQFWYRIMNSFRLVFGFSRKYQRLSLHYFVGASFQEQEVCAMVEYL