CuGenDBv2

Gene ID	Spg002262
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	ribosome production factor 1-like
Genome location	scaffold1:32854203..32858962
RNA-Seq Expression	Spg002262
Synteny	Spg002262
Gene Ontology terms	GO:0000460 - maturation of 5.8S rRNA (biological process) GO:0000470 - maturation of LSU-rRNA (biological process) GO:0005730 - nucleolus (cellular component) GO:0030687 - preribosome, large subunit precursor (cellular component) GO:0042134 - rRNA primary transcript binding (molecular function)
InterPro domains	IPR007109 - Brix domain IPR044281 - U3 snoRNP protein/Ribosome production factor 1

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008443155.1 PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo]

1.2e-142

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Query:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR
        MGEE KK++ IIPSMIKNKEKRAEVHANLK+QK+LEKRKRAKARDAAEKQALELGEE PPR +PRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR
Subjt:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR

Query:  EALPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP
        + LPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP
Subjt:  EALPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP

Query:  TSHEPELVLTNFTTRLGLRVG---------------------------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK
        T H+PELVLTNFTTRLGLRVG                                 RYIFESKENKKEADSK KSKDTKGEKV QQKVIARLQECGPRFTMK
Subjt:  TSHEPELVLTNFTTRLGLRVG---------------------------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK

Query:  LISLQHGTFDSKGGEYEWVHKVSLN
        LISLQHGTFDSKGGEYEWVHK  ++
Subjt:  LISLQHGTFDSKGGEYEWVHKVSLN

XP_022155906.1 ribosome production factor 1-like [Momordica charantia]

1.0e-144

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Query:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR
        MGEEKK  RDIIPSMIKNKEKR EVHANLK QK+LEKRKRAKARDA+EKQALELGEEPPPRM+PRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR
Subjt:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR

Query:  EALPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP
          LPKVLITTCRFNS+IGP+FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP
Subjt:  EALPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP

Query:  TSHEPELVLTNFTTRLGLRVG---------------------------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK
        TSHEPELVLTNFTTRLGLRVG                                 RYIF+SKENKKEADSKS SKD KGEKV QQKVIARLQECGPRFTMK
Subjt:  TSHEPELVLTNFTTRLGLRVG---------------------------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK

Query:  LISLQHGTFDSKGGEYEWVHKVSLN
        LISLQHGTFDSKGGEYEWVHK  ++
Subjt:  LISLQHGTFDSKGGEYEWVHKVSLN

XP_022156150.1 ribosome production factor 1-like [Momordica charantia]

1.0e-144

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Query:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR
        MGEEKK  RDIIPSMIKNKEKR EVHANLK QK+LEKRKRAKARDA+EKQALELGEEPPPRM+PRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR
Subjt:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR

Query:  EALPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP
          LPKVLITTCRFNSTIGP+FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP
Subjt:  EALPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP

Query:  TSHEPELVLTNFTTRLGLRVG---------------------------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK
        TSHEPELVLTNFTTRLGLRVG                                 RYIF+SKENKKEADSKS SKD KGEKV +QKVIARLQECGPRFTMK
Subjt:  TSHEPELVLTNFTTRLGLRVG---------------------------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK

Query:  LISLQHGTFDSKGGEYEWVHKVSLN
        LISLQHGTFDSKGGEYEWVHK  ++
Subjt:  LISLQHGTFDSKGGEYEWVHKVSLN

XP_031737500.1 ribosome production factor 1 [Cucumis sativus]

4.3e-140

82.15

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Query:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR
        MGEE KK++ I+PS IKNKEKRAEVHANLK+QK+LEKRKRAKARDAAEKQALELGEE PPR +PRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR
Subjt:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR

Query:  EALPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP
        + LPK+LITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRK+IKNHGNP
Subjt:  EALPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP

Query:  TSHEPELVLTNFTTRLGLRVG---------------------------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK
        T H+PELVLTNFTTRLGLRVG                                 RYIFESKENKKEADSK KSK TKGEKV QQKVIARLQECGPRFTMK
Subjt:  TSHEPELVLTNFTTRLGLRVG---------------------------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK

Query:  LISLQHGTFDSKGGEYEWVHKVSLN
        LISLQHGTFDSKGGEYEWVHK  ++
Subjt:  LISLQHGTFDSKGGEYEWVHKVSLN

XP_038906205.1 ribosome production factor 1 [Benincasa hispida]

7.2e-143

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Query:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR
        MGEE  K+R IIPSMIKNKEKRAEVHANLKNQK+LEKRKRAKARDAAEKQALELGEE PPR +PRTIENTREVDET+CKPDDEELFAGNDADEFSSIIKR
Subjt:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR

Query:  EALPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP
        E LPKVLITTCRFNSTIGP FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP
Subjt:  EALPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP

Query:  TSHEPELVLTNFTTRLGLRVG---------------------------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK
        TSH+PELVLTNFTTRLGLR+G                                 RYIFESKENKKEADSK KSKDTKGEKV QQKVIARLQECGPRFTMK
Subjt:  TSHEPELVLTNFTTRLGLRVG---------------------------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK

Query:  LISLQHGTFDSKGGEYEWVHKVSLN
        LISLQHGTFDSKGGEYEWVHK  ++
Subjt:  LISLQHGTFDSKGGEYEWVHKVSLN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LH42 Brix domain-containing protein

2.1e-140

82.15

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Query:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR
        MGEE KK++ I+PS IKNKEKRAEVHANLK+QK+LEKRKRAKARDAAEKQALELGEE PPR +PRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR
Subjt:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR

Query:  EALPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP
        + LPK+LITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRK+IKNHGNP
Subjt:  EALPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP

Query:  TSHEPELVLTNFTTRLGLRVG---------------------------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK
        T H+PELVLTNFTTRLGLRVG                                 RYIFESKENKKEADSK KSK TKGEKV QQKVIARLQECGPRFTMK
Subjt:  TSHEPELVLTNFTTRLGLRVG---------------------------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK

Query:  LISLQHGTFDSKGGEYEWVHKVSLN
        LISLQHGTFDSKGGEYEWVHK  ++
Subjt:  LISLQHGTFDSKGGEYEWVHKVSLN

A0A1S3B854 ribosome production factor 1 isoform X1

5.9e-143

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Query:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR
        MGEE KK++ IIPSMIKNKEKRAEVHANLK+QK+LEKRKRAKARDAAEKQALELGEE PPR +PRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR
Subjt:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR

Query:  EALPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP
        + LPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP
Subjt:  EALPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP

Query:  TSHEPELVLTNFTTRLGLRVG---------------------------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK
        T H+PELVLTNFTTRLGLRVG                                 RYIFESKENKKEADSK KSKDTKGEKV QQKVIARLQECGPRFTMK
Subjt:  TSHEPELVLTNFTTRLGLRVG---------------------------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK

Query:  LISLQHGTFDSKGGEYEWVHKVSLN
        LISLQHGTFDSKGGEYEWVHK  ++
Subjt:  LISLQHGTFDSKGGEYEWVHKVSLN

A0A5A7UHC7 Ribosome production factor 1 isoform X1

5.9e-143

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Query:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR
        MGEE KK++ IIPSMIKNKEKRAEVHANLK+QK+LEKRKRAKARDAAEKQALELGEE PPR +PRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR
Subjt:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR

Query:  EALPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP
        + LPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP
Subjt:  EALPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP

Query:  TSHEPELVLTNFTTRLGLRVG---------------------------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK
        T H+PELVLTNFTTRLGLRVG                                 RYIFESKENKKEADSK KSKDTKGEKV QQKVIARLQECGPRFTMK
Subjt:  TSHEPELVLTNFTTRLGLRVG---------------------------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK

Query:  LISLQHGTFDSKGGEYEWVHKVSLN
        LISLQHGTFDSKGGEYEWVHK  ++
Subjt:  LISLQHGTFDSKGGEYEWVHKVSLN

A0A6J1DPH5 ribosome production factor 1-like

4.8e-145

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Query:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR
        MGEEKK  RDIIPSMIKNKEKR EVHANLK QK+LEKRKRAKARDA+EKQALELGEEPPPRM+PRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR
Subjt:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR

Query:  EALPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP
          LPKVLITTCRFNSTIGP+FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP
Subjt:  EALPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP

Query:  TSHEPELVLTNFTTRLGLRVG---------------------------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK
        TSHEPELVLTNFTTRLGLRVG                                 RYIF+SKENKKEADSKS SKD KGEKV +QKVIARLQECGPRFTMK
Subjt:  TSHEPELVLTNFTTRLGLRVG---------------------------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK

Query:  LISLQHGTFDSKGGEYEWVHKVSLN
        LISLQHGTFDSKGGEYEWVHK  ++
Subjt:  LISLQHGTFDSKGGEYEWVHKVSLN

A0A6J1DT48 ribosome production factor 1-like

4.8e-145

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Query:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR
        MGEEKK  RDIIPSMIKNKEKR EVHANLK QK+LEKRKRAKARDA+EKQALELGEEPPPRM+PRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR
Subjt:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR

Query:  EALPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP
          LPKVLITTCRFNS+IGP+FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP
Subjt:  EALPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNP

Query:  TSHEPELVLTNFTTRLGLRVG---------------------------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK
        TSHEPELVLTNFTTRLGLRVG                                 RYIF+SKENKKEADSKS SKD KGEKV QQKVIARLQECGPRFTMK
Subjt:  TSHEPELVLTNFTTRLGLRVG---------------------------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK

Query:  LISLQHGTFDSKGGEYEWVHKVSLN
        LISLQHGTFDSKGGEYEWVHK  ++
Subjt:  LISLQHGTFDSKGGEYEWVHKVSLN

SwissProt top hits

e value

%identity

Alignment

Q5R631 Ribosome production factor 1

7.4e-50

44.1

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Query:  SMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKREALPKVLITTCRF
        S IKNKE+R  +    K Q+R EK     A+   +K+   LG++ PP+ VP+TI+N R  DET   P+DEE+      DEF+S   ++  PK+LITT   
Subjt:  SMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKREALPKVLITTCRF

Query:  NSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHG-NPTSHEPELVLTNF
                  +L +VIPN+H Y R    LKKII    A+DFT L+V++  R+  +GL++  LP GPTAHFK+S+V LRK+IK  G +PT H PE++L NF
Subjt:  NSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHG-NPTSHEPELVLTNF

Query:  TTRLGLRVGRYIFES--KENKKEADSKSKSKDTKGEKV----------SQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHK
        TTRLG  +GR +F S    N +    +  +   + + +          S++KV   +QE GPRFT+KL SLQ GTFDSK GEYEWVHK
Subjt:  TTRLGLRVGRYIFES--KENKKEADSKSKSKDTKGEKV----------SQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHK

Q5RJS9 Ribosome production factor 1

1.6e-49

44.64

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Query:  SMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKREALPKVLITTCRF
        S IKNK++R  +    K Q+R EK   AK +   E++A  LG++ PP+ VP+TI+N R  DET   P+DEE+      DEF+S   R+  PK+LITT   
Subjt:  SMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKREALPKVLITTCRF

Query:  NSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHG-NPTSHEPELVLTNF
                  +L +VIP++H Y R    LKKII    A+DFT L+V++  R+  +GL++  LP GPTAHFK+S+V LRK+IK  G +PT H PE++L NF
Subjt:  NSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHG-NPTSHEPELVLTNF

Query:  TTRLGLRVGRYIFES--KENKKEADSKSKSKDTKGEKV----------SQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKV
        TTRLG  +GR +F S    N +    +  +   + + +          S++KV   +QE GPRFT+KL SLQ GTFDSK GEYEWVHKV
Subjt:  TTRLGLRVGRYIFES--KENKKEADSKSKSKDTKGEKV----------SQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKV

Q7TND5 Ribosome production factor 1

2.2e-49

43.75

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Query:  SMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKREALPKVLITTCRF
        S IKNK++R  +    K Q+R EK     A+   +K+   LG++ PP+ VP+TI+N R  DET   P+DEE+      DEF+S   R+  PK+LITT   
Subjt:  SMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKREALPKVLITTCRF

Query:  NSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHG-NPTSHEPELVLTNF
                  +L +VIP++H Y R    LKKII    A+DFT L+V++  R+  +GL++  LP GPTAHFK+S+V LRK+IK  G +PT H PE++L NF
Subjt:  NSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHG-NPTSHEPELVLTNF

Query:  TTRLGLRVGRYIFES--KENKKEADSKSKSKDTKGEKV----------SQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHK
        TTRLG  +GR +F S    N +    +  +   + + +          S++KV   +QE GPRFT+KL SLQ GTFDSK GEYEWVHK
Subjt:  TTRLGLRVGRYIFES--KENKKEADSKSKSKDTKGEKV----------SQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHK

Q8AVP1 Ribosome production factor 1

1.9e-50

43.99

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Query:  SMIKNKEKRAEVHANLKNQKRLEK----RKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKREALPKVLIT
        S IKNK++R  +   LK +KR EK    +KR K R+A       LG++ PP+ VP+TIEN R  DET   P DEE+      DEF+    ++  PK+LIT
Subjt:  SMIKNKEKRAEVHANLKNQKRLEK----RKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKREALPKVLIT

Query:  TCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHG-NPTSHEPELV
        T          F  +L S+IPN+  Y R    LKKII    ++D+T L+V++  R+  +GL++  LP+GPTAHFKISNV LRK++K  G  PT H+PE++
Subjt:  TCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHG-NPTSHEPELV

Query:  LTNFTTRLGLRVGR-----YIFESKENKKEADSKSKSKDTKGEKV------SQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHK
        L NFTTRLG  +GR     Y  +     ++  +    +D    +       S++KV   +QE GPRFT+KL SLQ GTFDSK GEYEWVHK
Subjt:  LTNFTTRLGLRVGR-----YIFESKENKKEADSKSKSKDTKGEKV------SQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHK

Q9H9Y2 Ribosome production factor 1

1.6e-49

43.75

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Query:  SMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKREALPKVLITTCRF
        S IKNK++R  +    K Q+R EK     A+   +K+   LG++ PP+ VP+TI+N R  DET   P+DEE+      DEF+S   ++  PK+LITT   
Subjt:  SMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKREALPKVLITTCRF

Query:  NSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHG-NPTSHEPELVLTNF
                  +L +VIPN+H Y R    LKKII    A+DFT L+V++  R+  +GL++  LP GPTAHFK+S+V LRK+IK  G +PT H PE++L NF
Subjt:  NSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHG-NPTSHEPELVLTNF

Query:  TTRLGLRVGRYIFES--KENKKEADSKSKSKDTKGEKV----------SQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHK
        TTRLG  +GR +F S    N +    +  +   + + +          S++KV   +QE GPRFT+KL SLQ GTFDSK GEYEWVHK
Subjt:  TTRLGLRVGRYIFES--KENKKEADSKSKSKDTKGEKV----------SQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHK

Arabidopsis top hits

e value

%identity

Alignment

AT1G63780.1 Ribosomal RNA processing Brix domain protein

3.4e-26

36.89

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Query:  DEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLR
        DE+++    EA PK+L+TT R  S     F  EL  V PN+    RG+  + +IIE A + DFT +++VH  R   DGL+I  LP GPTA+F + NVV R
Subjt:  DEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLR

Query:  KDI---KNHGNPTSHEPELVLTNFTTRLGLRVG---RYIFES-KENKKEADSKSKSKD---------TKGEKVSQQKVIARLQECGPRFTMKLISLQHGT
         DI   K+ G      P L+  NFTT++G RVG   ++IF + K + K   + S   D          KGE   +      L+E GPRF ++L  ++ GT
Subjt:  KDI---KNHGNPTSHEPELVLTNFTTRLGLRVG---RYIFES-KENKKEADSKSKSKD---------TKGEKVSQQKVIARLQECGPRFTMKLISLQHGT

Query:  FDSKGGEYEWVHKVSLNLPYPLKWI
         +    E EWV +  +N     K+I
Subjt:  FDSKGGEYEWVHKVSLNLPYPLKWI

AT4G01560.1 Ribosomal RNA processing Brix domain protein

1.4e-107

63.84

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Query:  KKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKREALPK
        +K   I+PSMIKNK+KR++V+A  K++K+LEK+K+ +ARDAAEK+ALELGEEPP +M+P+TIENTRE DETVC+PDDEELFA  DADEF+ +++RE  PK
Subjt:  KKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKREALPK

Query:  VLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEP
        VL+TTCRFNST GPA ISELLSVIPN+HY KRGT DLKKI+EYA  KDFTSL+VVHT+RR+ D LLIIGLP GPTAHFK+SN+VLRKDIKNHGNPTSH+P
Subjt:  VLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEP

Query:  ELVLTNFTTRLGLRVGRY---IFESKENKKEADSKS-----------------KSKDTKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEW
        ELVL NFTTRLG RVGR+   +F    N +     +                 ++K++K +K  ++ +  RLQECGPRFT+KL++LQHGTFD+KGGE+EW
Subjt:  ELVLTNFTTRLGLRVGRY---IFESKENKKEADSKS-----------------KSKDTKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEW

Query:  VHKVSLN
        VHK  ++
Subjt:  VHKVSLN

Sequences

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CDS sequence

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ATGCCGCTGGTCACGATTGGGTTTGGGTCTCGGTTTATCGCCGATTTGGGTCTCGGACTGTTAAAGTCGCCGGCGTGGGTCTTCGCAGCAGTCGTCGTGGGTCTTGATTC
GGAGACGATTTCACGCTACGTTGGGTCTTTGCTCTGCGCCGTTGTGAGTCTCGGGTTTGTTCAGCCGTGGGTTTCATTACAGGCTATGGGAGAGGAGAAGAAGAAGAGCA
GGGATATAATCCCATCAATGATAAAGAACAAGGAAAAGAGGGCAGAAGTGCACGCCAACCTCAAGAACCAGAAGAGGCTTGAGAAACGCAAGAGGGCCAAGGCTCGTGAT
GCTGCTGAGAAGCAAGCTCTTGAACTTGGAGAAGAACCTCCTCCTAGGATGGTTCCTCGCACCATTGAGAACACAAGGGAGGTTGATGAGACGGTTTGCAAACCTGATGA
TGAAGAGCTATTTGCTGGAAATGATGCCGATGAATTTAGTTCCATCATAAAACGTGAAGCTTTGCCAAAAGTTTTAATTACTACTTGTCGTTTTAATTCTACTATTGGAC
CTGCTTTTATTTCAGAGTTGCTTTCAGTGATACCAAATGCACATTACTACAAGAGAGGAACTAACGATTTGAAGAAGATTATAGAATATGCAAATGCCAAGGACTTCACT
TCTTTGATGGTTGTTCATACGAGTAGGAGAAAATTGGATGGCCTTCTAATTATTGGCTTACCTGAGGGACCTACTGCCCATTTTAAGATATCAAATGTTGTCTTACGTAA
GGATATTAAGAATCATGGAAATCCGACCAGCCACGAGCCAGAGCTTGTGTTGACTAACTTCACAACACGCCTTGGTCTGCGTGTTGGAAGGTACATTTTTGAAAGCAAGG
AAAATAAAAAAGAGGCCGACTCAAAAAGTAAGTCCAAGGATACCAAGGGTGAGAAAGTTTCTCAGCAGAAAGTAATTGCACGGCTTCAGGAATGTGGTCCCCGATTCACA
ATGAAATTGATCAGTTTGCAGCACGGAACTTTCGATTCAAAAGGCGGGGAATATGAGTGGGTTCATAAGGTAAGTCTAAATCTCCCTTATCCCCTGAAATGGATACAAGC
CGCAGAAGATTTTTCTTGTGACATTCTCAATGGAGTTTATTGCTTTTATTTCTGGGGAGTAAAAGTTGTTCGACTCAGGTTTATATCGAAGGAGCGTCGATCAAATTCGA
GTCTCTTTTTTGGTCTGCTTGTATTTGATCTACCGTACACAATTTAA

mRNA sequence

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Protein sequence

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MPLVTIGFGSRFIADLGLGLLKSPAWVFAAVVVGLDSETISRYVGSLLCAVVSLGFVQPWVSLQAMGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARD
AAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFT
SLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFT
MKLISLQHGTFDSKGGEYEWVHKVSLNLPYPLKWIQAAEDFSCDILNGVYCFYFWGVKVVRLRFISKERRSNSSLFFGLLVFDLPYTI

Spg002262 (gene) of Sponge gourd (cylindrica) v1 genome