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Spg002280 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002280
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSWIM-type domain-containing protein
Genome locationscaffold1:31845667..31847365
RNA-Seq ExpressionSpg002280
SyntenySpg002280
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022134813.1 uncharacterized protein LOC111006994 [Momordica charantia]1.0e-1058.33Show/hide
Query:  KHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVLPPNVKRSSGLSRR
        KH P K Y+S YY N  L S Y+G IHPLG++SSW+IPE+VK I +LPPNVKR +G  ++
Subjt:  KHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVLPPNVKRSSGLSRR

XP_022155207.1 uncharacterized protein LOC111022347 [Momordica charantia]8.8e-1056.67Show/hide
Query:  KHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVLPPNVKRSSGLSRR
        KH P K Y+S YY N  L S Y+G IHPLG++SSW+IPE+VK I +L PNVKR +G  ++
Subjt:  KHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVLPPNVKRSSGLSRR

XP_030483642.1 uncharacterized protein LOC115700217 [Cannabis sativa]1.3e-0837.74Show/hide
Query:  QIPCSPACTVLTSKHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVLPPNVKRSSGLSRRAYASG----KIGIRVGKGSPDAYSDVG
        ++PCS A  VL  ++F   +Y S+YY      S Y   I PLG  +SW+IPE+VKNI V PP  KR +G  ++    G    K  ++ GK +   ++   
Subjt:  QIPCSPACTVLTSKHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVLPPNVKRSSGLSRRAYASG----KIGIRVGKGSPDAYSDVG

Query:  RRIGKN
        RR  KN
Subjt:  RRIGKN

XP_030487349.1 uncharacterized protein LOC115704274 [Cannabis sativa]1.3e-0837.74Show/hide
Query:  QIPCSPACTVLTSKHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVLPPNVKRSSGLSRRAYASG----KIGIRVGKGSPDAYSDVG
        ++PCS A  VL  ++F   +Y S+YY      S Y   I PLG  +SW+IPE+VKNI V PP  KR +G  ++    G    K  ++ GK +   ++   
Subjt:  QIPCSPACTVLTSKHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVLPPNVKRSSGLSRRAYASG----KIGIRVGKGSPDAYSDVG

Query:  RRIGKN
        RR  KN
Subjt:  RRIGKN

XP_030497480.1 uncharacterized protein LOC115713133 [Cannabis sativa]1.3e-0837.74Show/hide
Query:  QIPCSPACTVLTSKHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVLPPNVKRSSGLSRRAYASG----KIGIRVGKGSPDAYSDVG
        ++PCS A  VL  ++F   +Y S+YY      S Y   I PLG  +SW+IPE+VKNI V PP  KR +G  ++    G    K  ++ GK +   ++   
Subjt:  QIPCSPACTVLTSKHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVLPPNVKRSSGLSRRAYASG----KIGIRVGKGSPDAYSDVG

Query:  RRIGKN
        RR  KN
Subjt:  RRIGKN

TrEMBL top hitse value%identityAlignment
A0A5D3C2C0 Protein FAR1-RELATED SEQUENCE 3-like1.4e-0839.02Show/hide
Query:  VNLVDNVQFQIPCSPACTVLTSKHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVLPPNVKRSSGLSRR
        VN V+N+++Q+    +  V+   + P K ++S  YLN TL S Y  +I+PLG+   W IP+++ +I++LPPNVKR+ G  ++
Subjt:  VNLVDNVQFQIPCSPACTVLTSKHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVLPPNVKRSSGLSRR

A0A6J1C328 uncharacterized protein LOC1110069945.0e-1158.33Show/hide
Query:  KHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVLPPNVKRSSGLSRR
        KH P K Y+S YY N  L S Y+G IHPLG++SSW+IPE+VK I +LPPNVKR +G  ++
Subjt:  KHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVLPPNVKRSSGLSRR

A0A6J1DNQ8 uncharacterized protein LOC1110223474.2e-1056.67Show/hide
Query:  KHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVLPPNVKRSSGLSRR
        KH P K Y+S YY N  L S Y+G IHPLG++SSW+IPE+VK I +L PNVKR +G  ++
Subjt:  KHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVLPPNVKRSSGLSRR

A0A803R5Z4 Uncharacterized protein1.5e-0738.36Show/hide
Query:  QIPCSPACTVLTSKHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVLPPNVKRSSGLSRR
        ++PCS A  VL+ ++    +Y S+YY      + Y   I PLG  +SW+IP+ ++NI+VLPP  KR++G  ++
Subjt:  QIPCSPACTVLTSKHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVLPPNVKRSSGLSRR

U5DAI0 Uncharacterized protein1.2e-0739.13Show/hide
Query:  QIPCSPACTVLTSKHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVLPPNVKRSSG
        ++PC  A  V+   +     Y S YY      + Y+G ++P+G++S W +PEEVKNI+VLPP+ +  SG
Subjt:  QIPCSPACTVLTSKHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVLPPNVKRSSG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTAATCTGGTGGACAATGTGCAATTCCAGATACCATGTTCTCCTGCATGCACTGTTTTGACTTCAAAGCACTTTCCTATTAAGGAGTATATATCACATTACTACTT
GAATATGACTTTGTGTTCAATATACAATGGTTTAATCCATCCATTAGGCAACGAGTCTAGCTGGCATATCCCCGAGGAGGTCAAGAATATTTTAGTTCTCCCTCCCAACG
TTAAGCGTTCTTCTGGTCTTTCCCGACGCGCATATGCGTCGGGAAAGATCGGAATACGCGTCGGCAAAGGTTCTCCCGACGCGTATTCAGACGTCGGGAGACGCATCGGG
AAAAACGTGTCGGCAGAGCCTCTGCCGACGCGTATTTGTCATGCGTCGGCAGAGACCATCTCTGCCGACGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTAATCTGGTGGACAATGTGCAATTCCAGATACCATGTTCTCCTGCATGCACTGTTTTGACTTCAAAGCACTTTCCTATTAAGGAGTATATATCACATTACTACTT
GAATATGACTTTGTGTTCAATATACAATGGTTTAATCCATCCATTAGGCAACGAGTCTAGCTGGCATATCCCCGAGGAGGTCAAGAATATTTTAGTTCTCCCTCCCAACG
TTAAGCGTTCTTCTGGTCTTTCCCGACGCGCATATGCGTCGGGAAAGATCGGAATACGCGTCGGCAAAGGTTCTCCCGACGCGTATTCAGACGTCGGGAGACGCATCGGG
AAAAACGTGTCGGCAGAGCCTCTGCCGACGCGTATTTGTCATGCGTCGGCAGAGACCATCTCTGCCGACGCATAA
Protein sequenceShow/hide protein sequence
MVNLVDNVQFQIPCSPACTVLTSKHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVLPPNVKRSSGLSRRAYASGKIGIRVGKGSPDAYSDVGRRIG
KNVSAEPLPTRICHASAETISADA