; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg002286 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002286
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold1:32169038..32175152
RNA-Seq ExpressionSpg002286
SyntenySpg002286
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW90395.1 hypothetical protein CK203_045762 [Vitis vinifera]2.0e-2434.67Show/hide
Query:  LAVFELASGLNINFGKSELLGINSPMEDLESVAGIFGCKIGSWPSNYLGLPLGGSQMNGGI-----------------HNIKWKTTQLPQLMGGLGIVNL
        L VF   SGL +N  KS + GIN     L  +A +  CK   WP  YLGLPLGG+    G                  H ++W     P+ +GGLG+ N+
Subjt:  LAVFELASGLNINFGKSELLGINSPMEDLESVAGIFGCKIGSWPSNYLGLPLGGSQMNGGI-----------------HNIKWKTTQLPQLMGGLGIVNL

Query:  KQRNEALLAKWIWRYLHEENSLWHQLIVAKYYSIGDSSLWSSHS-ARGGSKSPWR----------LSTKQHDAIATFWNTAWDLGLRRNLNEEEISEWAN
          RN ALL KW+WRY  E ++LWHQ+I++ Y S   S+ W +++  R   + PW+          L T+     A  WN    L  RRNL++ EI +   
Subjt:  KQRNEALLAKWIWRYLHEENSLWHQLIVAKYYSIGDSSLWSSHS-ARGGSKSPWR----------LSTKQHDAIATFWNTAWDLGLRRNLNEEEISEWAN

Query:  LSHQLSSVILRNN-RDSWLWPSDPS
        L   L  + L  +  D+ LWP   S
Subjt:  LSHQLSSVILRNN-RDSWLWPSDPS

RVX11275.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]6.8e-2547.66Show/hide
Query:  MKFLSWNVQGLGSWKKRTIIKATILKHKPSFVLLQETKKTTTTRWLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIYVCMSDG
        MK +SWN +GLGS KKR ++K  +   KP  V++QETKK    R L+ S+WS     WAAL + GASGGI+I+W       +E + G FS+SI   M + 
Subjt:  MKFLSWNVQGLGSWKKRTIIKATILKHKPSFVLLQETKKTTTTRWLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIYVCMSDG

Query:  FSFWLSAIYGPTDRSQRADFWQELHDLA
         S WLSA+YGP + + R DFW EL D+A
Subjt:  FSFWLSAIYGPTDRSQRADFWQELHDLA

RVX11275.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]2.2e-0730Show/hide
Query:  SQRADFWQELHDLAVFELASGLNINFGKSELLGINSPMEDLESVAGIFGCKIGSWPSNYLGLPLGGSQMNGGIHNIKWKTTQLPQLMGGLGIVNLKQRNE
        S+R D WQ+ +      L+ G  I   +S L  +      L  +      KI      +L   +G  + +   H + W     P+  GGLG   +  RN 
Subjt:  SQRADFWQELHDLAVFELASGLNINFGKSELLGINSPMEDLESVAGIFGCKIGSWPSNYLGLPLGGSQMNGGIHNIKWKTTQLPQLMGGLGIVNLKQRNE

Query:  ALLAKWIWRYLHEENSLWHQLIVAKYYSIGDSSLWS-SHSARGGSKSPWR
        ALL KW+WRY  E ++LWHQ+I++ Y S   S+ W  +++ R   + PW+
Subjt:  ALLAKWIWRYLHEENSLWHQLIVAKYYSIGDSSLWS-SHSARGGSKSPWR

RVX11275.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]2.0e-2436.46Show/hide
Query:  MKFLSWNVQGLGSWKKRTIIKATILKHKPSFVLLQETKKTTTTRWLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIYVCMSDG
        MK +SWN +GLGS KKR ++K  +   KP  V+ QETKK    R  + S+W++    WAAL + GASGGI+I+W     + +E + G FS+SI   ++  
Subjt:  MKFLSWNVQGLGSWKKRTIIKATILKHKPSFVLLQETKKTTTTRWLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIYVCMSDG

Query:  FSFWLSAIYGPTDRSQRADFWQELHDLAVFE-----LASGLNINFGKSELLG---INSPMEDLESVAGIFGCKIGSWPSNYLGLPLGGSQMN
         S WLSA+YGP + + R DFW EL D+A        +    N+    SE LG   +   M+D +    I  C++   P           Q+N
Subjt:  FSFWLSAIYGPTDRSQRADFWQELHDLAVFE-----LASGLNINFGKSELLG---INSPMEDLESVAGIFGCKIGSWPSNYLGLPLGGSQMN

XP_022145142.1 uncharacterized protein LOC111014657 [Momordica charantia]3.0e-2542.31Show/hide
Query:  MKFLSWNVQGLGSWKKRTIIKATILKHKPSFVLLQETKKTTTTRWLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIYVCMSDG
        M  L+WNV+GLGS  KR  IK TI    P  V+L ETK ++     IKS+WSS  I WA+LD+ GASGGII++W     +  E I G FS+S++  ++D 
Subjt:  MKFLSWNVQGLGSWKKRTIIKATILKHKPSFVLLQETKKTTTTRWLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIYVCMSDG

Query:  FSFWLSAIYGPTDRSQRADFWQELHDL-----AVFELASGLNINFGKSELLGINSP
        F++WL+ +Y P  + +R  FWQEL DL      ++ L    NI     E    N P
Subjt:  FSFWLSAIYGPTDRSQRADFWQELHDL-----AVFELASGLNINFGKSELLGINSP

XP_022158956.1 uncharacterized protein LOC111025405 [Momordica charantia]1.2e-2951.56Show/hide
Query:  MKFLSWNVQGLGSWKKRTIIKATILKHKPSFVLLQETKKTTTTRWLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIYVCMSDG
        MKFL+WNV+GL SWKK  +IK  I +  P+ V+LQETK +     ++KS+WS+  I W+ALD+ G + GI+I+W+DPD    E I G+FSL+I  C+SDG
Subjt:  MKFLSWNVQGLGSWKKRTIIKATILKHKPSFVLLQETKKTTTTRWLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIYVCMSDG

Query:  FSFWLSAIYGPTDRSQRADFWQELHDLA
        F FW+S IYGP+       FWQEL DL+
Subjt:  FSFWLSAIYGPTDRSQRADFWQELHDLA

TrEMBL top hitse value%identityAlignment
A0A438DC91 Putative ribonuclease H protein9.5e-2536.46Show/hide
Query:  MKFLSWNVQGLGSWKKRTIIKATILKHKPSFVLLQETKKTTTTRWLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIYVCMSDG
        MK +SWN +GLGS KKR ++K  +   KP  V+ QETKK    R  + S+W++    WAAL + GASGGI+I+W     + +E + G FS+SI   ++  
Subjt:  MKFLSWNVQGLGSWKKRTIIKATILKHKPSFVLLQETKKTTTTRWLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIYVCMSDG

Query:  FSFWLSAIYGPTDRSQRADFWQELHDLAVFE-----LASGLNINFGKSELLG---INSPMEDLESVAGIFGCKIGSWPSNYLGLPLGGSQMN
         S WLSA+YGP + + R DFW EL D+A        +    N+    SE LG   +   M+D +    I  C++   P           Q+N
Subjt:  FSFWLSAIYGPTDRSQRADFWQELHDLAVFE-----LASGLNINFGKSELLG---INSPMEDLESVAGIFGCKIGSWPSNYLGLPLGGSQMN

A0A438JQQ0 LINE-1 retrotransposable element ORF2 protein3.3e-2547.66Show/hide
Query:  MKFLSWNVQGLGSWKKRTIIKATILKHKPSFVLLQETKKTTTTRWLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIYVCMSDG
        MK +SWN +GLGS KKR ++K  +   KP  V++QETKK    R L+ S+WS     WAAL + GASGGI+I+W       +E + G FS+SI   M + 
Subjt:  MKFLSWNVQGLGSWKKRTIIKATILKHKPSFVLLQETKKTTTTRWLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIYVCMSDG

Query:  FSFWLSAIYGPTDRSQRADFWQELHDLA
         S WLSA+YGP + + R DFW EL D+A
Subjt:  FSFWLSAIYGPTDRSQRADFWQELHDLA

A0A438JQQ0 LINE-1 retrotransposable element ORF2 protein1.1e-0730Show/hide
Query:  SQRADFWQELHDLAVFELASGLNINFGKSELLGINSPMEDLESVAGIFGCKIGSWPSNYLGLPLGGSQMNGGIHNIKWKTTQLPQLMGGLGIVNLKQRNE
        S+R D WQ+ +      L+ G  I   +S L  +      L  +      KI      +L   +G  + +   H + W     P+  GGLG   +  RN 
Subjt:  SQRADFWQELHDLAVFELASGLNINFGKSELLGINSPMEDLESVAGIFGCKIGSWPSNYLGLPLGGSQMNGGIHNIKWKTTQLPQLMGGLGIVNLKQRNE

Query:  ALLAKWIWRYLHEENSLWHQLIVAKYYSIGDSSLWS-SHSARGGSKSPWR
        ALL KW+WRY  E ++LWHQ+I++ Y S   S+ W  +++ R   + PW+
Subjt:  ALLAKWIWRYLHEENSLWHQLIVAKYYSIGDSSLWS-SHSARGGSKSPWR

A0A438JQQ0 LINE-1 retrotransposable element ORF2 protein9.5e-2534.67Show/hide
Query:  LAVFELASGLNINFGKSELLGINSPMEDLESVAGIFGCKIGSWPSNYLGLPLGGSQMNGGI-----------------HNIKWKTTQLPQLMGGLGIVNL
        L VF   SGL +N  KS + GIN     L  +A +  CK   WP  YLGLPLGG+    G                  H ++W     P+ +GGLG+ N+
Subjt:  LAVFELASGLNINFGKSELLGINSPMEDLESVAGIFGCKIGSWPSNYLGLPLGGSQMNGGI-----------------HNIKWKTTQLPQLMGGLGIVNL

Query:  KQRNEALLAKWIWRYLHEENSLWHQLIVAKYYSIGDSSLWSSHS-ARGGSKSPWR----------LSTKQHDAIATFWNTAWDLGLRRNLNEEEISEWAN
          RN ALL KW+WRY  E ++LWHQ+I++ Y S   S+ W +++  R   + PW+          L T+     A  WN    L  RRNL++ EI +   
Subjt:  KQRNEALLAKWIWRYLHEENSLWHQLIVAKYYSIGDSSLWSSHS-ARGGSKSPWR----------LSTKQHDAIATFWNTAWDLGLRRNLNEEEISEWAN

Query:  LSHQLSSVILRNN-RDSWLWPSDPS
        L   L  + L  +  D+ LWP   S
Subjt:  LSHQLSSVILRNN-RDSWLWPSDPS

A0A6J1CVN2 uncharacterized protein LOC1110146571.5e-2542.31Show/hide
Query:  MKFLSWNVQGLGSWKKRTIIKATILKHKPSFVLLQETKKTTTTRWLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIYVCMSDG
        M  L+WNV+GLGS  KR  IK TI    P  V+L ETK ++     IKS+WSS  I WA+LD+ GASGGII++W     +  E I G FS+S++  ++D 
Subjt:  MKFLSWNVQGLGSWKKRTIIKATILKHKPSFVLLQETKKTTTTRWLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIYVCMSDG

Query:  FSFWLSAIYGPTDRSQRADFWQELHDL-----AVFELASGLNINFGKSELLGINSP
        F++WL+ +Y P  + +R  FWQEL DL      ++ L    NI     E    N P
Subjt:  FSFWLSAIYGPTDRSQRADFWQELHDL-----AVFELASGLNINFGKSELLGINSP

A0A6J1E2G6 uncharacterized protein LOC1110254055.8e-3051.56Show/hide
Query:  MKFLSWNVQGLGSWKKRTIIKATILKHKPSFVLLQETKKTTTTRWLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIYVCMSDG
        MKFL+WNV+GL SWKK  +IK  I +  P+ V+LQETK +     ++KS+WS+  I W+ALD+ G + GI+I+W+DPD    E I G+FSL+I  C+SDG
Subjt:  MKFLSWNVQGLGSWKKRTIIKATILKHKPSFVLLQETKKTTTTRWLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIYVCMSDG

Query:  FSFWLSAIYGPTDRSQRADFWQELHDLA
        F FW+S IYGP+       FWQEL DL+
Subjt:  FSFWLSAIYGPTDRSQRADFWQELHDLA

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657505.6e-0639.74Show/hide
Query:  HNIKWKTTQLPQLMGGLGIVNLKQRNEALLAKWIWRYLHEENSLWHQLIVAKYYSIGD--SSLWSSHSARGGSKSPWR
        H +KW     P+  GGLG+   K  N AL++K  WR L E+NSLW  L++ K Y +G+   S W     +G   S WR
Subjt:  HNIKWKTTQLPQLMGGLGIVNLKQRNEALLAKWIWRYLHEENSLWHQLIVAKYYSIGD--SSLWSSHSARGGSKSPWR

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTTTCTATCCTGGAATGTTCAAGGTTTGGGGTCATGGAAAAAGCGGACAATAATCAAAGCAACTATTCTGAAGCACAAGCCTTCTTTTGTGCTCCTTCAAGAAAC
TAAGAAGACTACAACTACCAGATGGTTAATTAAGTCTATTTGGAGTTCATCTTTCATTGGTTGGGCAGCCCTGGACTCCATAGGAGCTTCGGGTGGGATTATTATCATGT
GGAGCGATCCAGATTACACTATTAAGGAGACTATCCGAGGTCTTTTCTCTCTTTCTATTTATGTTTGTATGTCTGATGGGTTTTCTTTTTGGTTATCGGCTATCTATGGC
CCAACAGATCGATCTCAAAGGGCGGATTTTTGGCAAGAGCTTCATGACTTGGCAGTTTTTGAGTTGGCCTCCGGATTGAATATAAATTTTGGGAAAAGTGAGCTTCTTGG
CATCAATTCTCCTATGGAAGATTTGGAATCAGTAGCTGGTATTTTTGGTTGCAAAATTGGTTCATGGCCATCTAACTATTTAGGTCTTCCTTTAGGGGGTTCTCAAATGA
ATGGTGGTATTCACAATATTAAGTGGAAGACCACTCAACTTCCCCAACTTATGGGCGGACTTGGGATTGTAAATCTAAAGCAGAGAAACGAGGCCTTGTTAGCAAAATGG
ATTTGGCGTTATCTTCATGAGGAGAATTCTCTTTGGCATCAACTTATTGTGGCTAAATATTACTCTATAGGTGATTCTAGCCTTTGGTCTTCTCATTCTGCGAGGGGTGG
TTCTAAGTCTCCATGGAGATTGTCAACCAAACAACATGATGCTATTGCCACATTCTGGAATACAGCCTGGGACCTTGGTCTTAGGAGGAATCTTAATGAGGAAGAAATAT
CGGAATGGGCTAATCTATCTCATCAATTATCCTCAGTTATTTTGAGGAATAATCGAGACTCTTGGTTGTGGCCAAGTGACCCTTCTAAAGCGCTCGATTTTTGGGACGCT
TTCACCATGACGACCAAGAAAGCCACGACTAATGTAAGTGTAGATCCTTCCTTGGTTGATAAAGAGGCGGAATCTACCCCCGTCCTCTCACCACAAGAGACAACTGTACG
CTTGCTGTCAGTTGAAAACGACTTGCGTGAGATCAAGAAGATATTAGAACTAATGTGGGAAAAAATTGGCGTCCAGACTGAACAATTAACCTTGAAACCAGCGACACAAG
CGAATTGGGGAAAAGAAACACAAAATCGCCAAGGAGAAAGTAGCAAGATGACATTCCAGCAAGAAGGCAGAGTAAAATTTCATCAAGAAAAGCATACTGGCGAGCAAAAG
ACAGTCCAAGATTGGGACATGGCTCCCAACAAAATATCAAGAATGGGAAATGGCACCCAAAAGATACCAAGAATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGTTTCTATCCTGGAATGTTCAAGGTTTGGGGTCATGGAAAAAGCGGACAATAATCAAAGCAACTATTCTGAAGCACAAGCCTTCTTTTGTGCTCCTTCAAGAAAC
TAAGAAGACTACAACTACCAGATGGTTAATTAAGTCTATTTGGAGTTCATCTTTCATTGGTTGGGCAGCCCTGGACTCCATAGGAGCTTCGGGTGGGATTATTATCATGT
GGAGCGATCCAGATTACACTATTAAGGAGACTATCCGAGGTCTTTTCTCTCTTTCTATTTATGTTTGTATGTCTGATGGGTTTTCTTTTTGGTTATCGGCTATCTATGGC
CCAACAGATCGATCTCAAAGGGCGGATTTTTGGCAAGAGCTTCATGACTTGGCAGTTTTTGAGTTGGCCTCCGGATTGAATATAAATTTTGGGAAAAGTGAGCTTCTTGG
CATCAATTCTCCTATGGAAGATTTGGAATCAGTAGCTGGTATTTTTGGTTGCAAAATTGGTTCATGGCCATCTAACTATTTAGGTCTTCCTTTAGGGGGTTCTCAAATGA
ATGGTGGTATTCACAATATTAAGTGGAAGACCACTCAACTTCCCCAACTTATGGGCGGACTTGGGATTGTAAATCTAAAGCAGAGAAACGAGGCCTTGTTAGCAAAATGG
ATTTGGCGTTATCTTCATGAGGAGAATTCTCTTTGGCATCAACTTATTGTGGCTAAATATTACTCTATAGGTGATTCTAGCCTTTGGTCTTCTCATTCTGCGAGGGGTGG
TTCTAAGTCTCCATGGAGATTGTCAACCAAACAACATGATGCTATTGCCACATTCTGGAATACAGCCTGGGACCTTGGTCTTAGGAGGAATCTTAATGAGGAAGAAATAT
CGGAATGGGCTAATCTATCTCATCAATTATCCTCAGTTATTTTGAGGAATAATCGAGACTCTTGGTTGTGGCCAAGTGACCCTTCTAAAGCGCTCGATTTTTGGGACGCT
TTCACCATGACGACCAAGAAAGCCACGACTAATGTAAGTGTAGATCCTTCCTTGGTTGATAAAGAGGCGGAATCTACCCCCGTCCTCTCACCACAAGAGACAACTGTACG
CTTGCTGTCAGTTGAAAACGACTTGCGTGAGATCAAGAAGATATTAGAACTAATGTGGGAAAAAATTGGCGTCCAGACTGAACAATTAACCTTGAAACCAGCGACACAAG
CGAATTGGGGAAAAGAAACACAAAATCGCCAAGGAGAAAGTAGCAAGATGACATTCCAGCAAGAAGGCAGAGTAAAATTTCATCAAGAAAAGCATACTGGCGAGCAAAAG
ACAGTCCAAGATTGGGACATGGCTCCCAACAAAATATCAAGAATGGGAAATGGCACCCAAAAGATACCAAGAATTTAA
Protein sequenceShow/hide protein sequence
MKFLSWNVQGLGSWKKRTIIKATILKHKPSFVLLQETKKTTTTRWLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIYVCMSDGFSFWLSAIYG
PTDRSQRADFWQELHDLAVFELASGLNINFGKSELLGINSPMEDLESVAGIFGCKIGSWPSNYLGLPLGGSQMNGGIHNIKWKTTQLPQLMGGLGIVNLKQRNEALLAKW
IWRYLHEENSLWHQLIVAKYYSIGDSSLWSSHSARGGSKSPWRLSTKQHDAIATFWNTAWDLGLRRNLNEEEISEWANLSHQLSSVILRNNRDSWLWPSDPSKALDFWDA
FTMTTKKATTNVSVDPSLVDKEAESTPVLSPQETTVRLLSVENDLREIKKILELMWEKIGVQTEQLTLKPATQANWGKETQNRQGESSKMTFQQEGRVKFHQEKHTGEQK
TVQDWDMAPNKISRMGNGTQKIPRI