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Spg002308 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002308
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold1:32930891..32935205
RNA-Seq ExpressionSpg002308
SyntenySpg002308
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]2.7e-0869.39Show/hide
Query:  RPRGNRSRLQTRELAKTVEIEIPMPDTLPMSAESSKSTSSTWVELFIET
        RPRGNR  LQT +L KTVEIE+PMPDTLP  AES  S SSTW+EL+ E+
Subjt:  RPRGNRSRLQTRELAKTVEIEIPMPDTLPMSAESSKSTSSTWVELFIET

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.7e-1052.56Show/hide
Query:  GKTRRFIVLTLGFGLFD-----RPRGNRSRLQTRELAKTVEIEIPMPDTLPMSAESSKSTSSTWVELFIETFCIVNVF
        G++ RF+  + GF +F       PRGNR  L T +L KTVEIE+P+PDTLP SAESSKS SSTW+EL+ E+  +  +F
Subjt:  GKTRRFIVLTLGFGLFD-----RPRGNRSRLQTRELAKTVEIEIPMPDTLPMSAESSKSTSSTWVELFIETFCIVNVF

KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]6.1e-1345.22Show/hide
Query:  SHTVELESQFDM-RVAVKHESIFVVFGGLLDKSVGNLVFIPSEIRIHEHGKTRRFIVLTLGFGLFDRPRGNRSRLQTRELAKTVEIEIPMPDTLPMSAES
        S  V+ E+ F M R  +++ + F+    +LD+ V NLVFI S +RI                   + PRGNR  LQ  +L KTVEIE+PMPDTLP S+ES
Subjt:  SHTVELESQFDM-RVAVKHESIFVVFGGLLDKSVGNLVFIPSEIRIHEHGKTRRFIVLTLGFGLFDRPRGNRSRLQTRELAKTVEIEIPMPDTLPMSAES

Query:  SKSTSSTWVELFIET
        SKS SSTW+EL+ E+
Subjt:  SKSTSSTWVELFIET

KAA0066795.1 uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa]2.7e-0843.69Show/hide
Query:  FVVFG----------GLLDKSVGNLVFIPSEIRIHEHGKTRRFIVLTLGFGLFDRPRGNRSRLQTRELAKTVEIEIPMPDTLPMSAESSKSTSSTWVELF
        FV+FG          G   K  G LVF  +   +  H   ++  ++         PRGNR  LQTREL KT  IE+P+PDTLP SAESS S SSTW+EL+
Subjt:  FVVFG----------GLLDKSVGNLVFIPSEIRIHEHGKTRRFIVLTLGFGLFDRPRGNRSRLQTRELAKTVEIEIPMPDTLPMSAESSKSTSSTWVELF

Query:  IET
         E+
Subjt:  IET

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]4.5e-0868.75Show/hide
Query:  PRGNRSRLQTRELAKTVEIEIPMPDTLPMSAESSKSTSSTWVELFIET
        PRGNR   QT +L KTVEIE+P+PDTLP SAESS S SSTW+EL+ E+
Subjt:  PRGNRSRLQTRELAKTVEIEIPMPDTLPMSAESSKSTSSTWVELFIET

TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein1.3e-0869.39Show/hide
Query:  RPRGNRSRLQTRELAKTVEIEIPMPDTLPMSAESSKSTSSTWVELFIET
        RPRGNR  LQT +L KTVEIE+PMPDTLP  AES  S SSTW+EL+ E+
Subjt:  RPRGNRSRLQTRELAKTVEIEIPMPDTLPMSAESSKSTSSTWVELFIET

A0A5A7UAH6 CCHC-type domain-containing protein8.1e-1152.56Show/hide
Query:  GKTRRFIVLTLGFGLFD-----RPRGNRSRLQTRELAKTVEIEIPMPDTLPMSAESSKSTSSTWVELFIETFCIVNVF
        G++ RF+  + GF +F       PRGNR  L T +L KTVEIE+P+PDTLP SAESSKS SSTW+EL+ E+  +  +F
Subjt:  GKTRRFIVLTLGFGLFD-----RPRGNRSRLQTRELAKTVEIEIPMPDTLPMSAESSKSTSSTWVELFIETFCIVNVF

A0A5A7V2F2 Uncharacterized protein3.0e-1345.22Show/hide
Query:  SHTVELESQFDM-RVAVKHESIFVVFGGLLDKSVGNLVFIPSEIRIHEHGKTRRFIVLTLGFGLFDRPRGNRSRLQTRELAKTVEIEIPMPDTLPMSAES
        S  V+ E+ F M R  +++ + F+    +LD+ V NLVFI S +RI                   + PRGNR  LQ  +L KTVEIE+PMPDTLP S+ES
Subjt:  SHTVELESQFDM-RVAVKHESIFVVFGGLLDKSVGNLVFIPSEIRIHEHGKTRRFIVLTLGFGLFDRPRGNRSRLQTRELAKTVEIEIPMPDTLPMSAES

Query:  SKSTSSTWVELFIET
        SKS SSTW+EL+ E+
Subjt:  SKSTSSTWVELFIET

A0A5D3BET3 Uncharacterized protein2.2e-0868.75Show/hide
Query:  PRGNRSRLQTRELAKTVEIEIPMPDTLPMSAESSKSTSSTWVELFIET
        PRGNR   QT +L KTVEIE+P+PDTLP SAESS S SSTW+EL+ E+
Subjt:  PRGNRSRLQTRELAKTVEIEIPMPDTLPMSAESSKSTSSTWVELFIET

A0A5D3DWP3 Uncharacterized protein1.3e-0843.69Show/hide
Query:  FVVFG----------GLLDKSVGNLVFIPSEIRIHEHGKTRRFIVLTLGFGLFDRPRGNRSRLQTRELAKTVEIEIPMPDTLPMSAESSKSTSSTWVELF
        FV+FG          G   K  G LVF  +   +  H   ++  ++         PRGNR  LQTREL KT  IE+P+PDTLP SAESS S SSTW+EL+
Subjt:  FVVFG----------GLLDKSVGNLVFIPSEIRIHEHGKTRRFIVLTLGFGLFDRPRGNRSRLQTRELAKTVEIEIPMPDTLPMSAESSKSTSSTWVELF

Query:  IET
         E+
Subjt:  IET

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACGACCCACTTTGTATTTGATACAAACGCCATGATTCAACGCATTCGTGTAACCCCGAGACTTTCCTTGGATTATTTTCTCTTGTCACATACAGTTGAATTAGA
ATCTCAGTTTGATATGAGGGTAGCAGTGAAGCACGAATCTATATTTGTTGTGTTCGGGGGATTGCTGGACAAATCTGTTGGGAATCTCGTTTTCATTCCTTCAGAAATTA
GAATTCATGAGCATGGAAAGACAAGACGATTTATAGTTCTGACGCTCGGTTTTGGTTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGACTACAGACCAGGGAACTAGCC
AAGACTGTAGAGATCGAGATCCCGATGCCTGATACACTGCCAATGTCTGCTGAAAGCTCCAAATCGACTTCCAGTACGTGGGTAGAGTTGTTCATTGAGACTTTTTGTAT
TGTAAATGTCTTTGTTCAACGTTTCAGTAGGGTCAACAGGTCCATTAGGTCCCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATACGACCCACTTTGTATTTGATACAAACGCCATGATTCAACGCATTCGTGTAACCCCGAGACTTTCCTTGGATTATTTTCTCTTGTCACATACAGTTGAATTAGA
ATCTCAGTTTGATATGAGGGTAGCAGTGAAGCACGAATCTATATTTGTTGTGTTCGGGGGATTGCTGGACAAATCTGTTGGGAATCTCGTTTTCATTCCTTCAGAAATTA
GAATTCATGAGCATGGAAAGACAAGACGATTTATAGTTCTGACGCTCGGTTTTGGTTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGACTACAGACCAGGGAACTAGCC
AAGACTGTAGAGATCGAGATCCCGATGCCTGATACACTGCCAATGTCTGCTGAAAGCTCCAAATCGACTTCCAGTACGTGGGTAGAGTTGTTCATTGAGACTTTTTGTAT
TGTAAATGTCTTTGTTCAACGTTTCAGTAGGGTCAACAGGTCCATTAGGTCCCACTGA
Protein sequenceShow/hide protein sequence
MDTTHFVFDTNAMIQRIRVTPRLSLDYFLLSHTVELESQFDMRVAVKHESIFVVFGGLLDKSVGNLVFIPSEIRIHEHGKTRRFIVLTLGFGLFDRPRGNRSRLQTRELA
KTVEIEIPMPDTLPMSAESSKSTSSTWVELFIETFCIVNVFVQRFSRVNRSIRSH