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Spg002318 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002318
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold1:32291574..32303941
RNA-Seq ExpressionSpg002318
SyntenySpg002318
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.3e-1048Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFQTKLAGGPGGG
        PRGNR SLQT +L KT                 VEIELP+PDTLPTSAESS ++SS+  +   E   V        +  DDV WLHA+F+ K  GGPGGG
Subjt:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFQTKLAGGPGGG

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.3e-1147.47Show/hide
Query:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRTSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFQTKLAGGPGGG
        PRGNR +L T KL KTVEIELPVPDTLPTSAESS+++SS+  +                          EG    +  DD+ WLHA+F  K AG PGGG
Subjt:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRTSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFQTKLAGGPGGG

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]3.5e-1250.49Show/hide
Query:  IYGSNARFWLFDKPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFQTKLAGGP
        ++ SN + +L  +PRGNR SLQT KL KT                 VEIELPVPDTLPTSAES  ++S ST        +  DDV WLHA+F+ K AGGP
Subjt:  IYGSNARFWLFDKPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFQTKLAGGP

Query:  GGG
        GGG
Subjt:  GGG

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]1.2e-0941.53Show/hide
Query:  DKPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQ--------------------------EGQRVSLEEDDV
        + PRGNRSSLQT +L KT                 VEIELPVPDTLPTSAES  ++SS+  +                          EG    +  DDV
Subjt:  DKPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQ--------------------------EGQRVSLEEDDV

Query:  RWLHAIFQTKLAGGPGGG
         WLH +F+ K+AGGPGGG
Subjt:  RWLHAIFQTKLAGGPGGG

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.3e-1048Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFQTKLAGGPGGG
        PRGNR SLQT +L KT                 VEIELP+PDTLPTSAESS ++SS+  +   E   V        +  DDV WLHA+F+ K  GGPGGG
Subjt:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFQTKLAGGPGGG

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase1.6e-1048Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFQTKLAGGPGGG
        PRGNR SLQT +L KT                 VEIELP+PDTLPTSAESS ++SS+  +   E   V        +  DDV WLHA+F+ K  GGPGGG
Subjt:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFQTKLAGGPGGG

A0A5A7UAH6 CCHC-type domain-containing protein6.5e-1247.47Show/hide
Query:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRTSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFQTKLAGGPGGG
        PRGNR +L T KL KTVEIELPVPDTLPTSAESS+++SS+  +                          EG    +  DD+ WLHA+F  K AG PGGG
Subjt:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRTSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFQTKLAGGPGGG

A0A5A7VIY9 Uncharacterized protein6.0e-1041.53Show/hide
Query:  DKPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQ--------------------------EGQRVSLEEDDV
        + PRGNRSSLQT +L KT                 VEIELPVPDTLPTSAES  ++SS+  +                          EG    +  DDV
Subjt:  DKPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQ--------------------------EGQRVSLEEDDV

Query:  RWLHAIFQTKLAGGPGGG
         WLH +F+ K+AGGPGGG
Subjt:  RWLHAIFQTKLAGGPGGG

A0A5D3BAD1 Retrotrans_gag domain-containing protein1.7e-1250.49Show/hide
Query:  IYGSNARFWLFDKPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFQTKLAGGP
        ++ SN + +L  +PRGNR SLQT KL KT                 VEIELPVPDTLPTSAES  ++S ST        +  DDV WLHA+F+ K AGGP
Subjt:  IYGSNARFWLFDKPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFQTKLAGGP

Query:  GGG
        GGG
Subjt:  GGG

A0A5D3D150 Reverse transcriptase1.6e-1048Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFQTKLAGGPGGG
        PRGNR SLQT +L KT                 VEIELP+PDTLPTSAESS ++SS+  +   E   V        +  DDV WLHA+F+ K  GGPGGG
Subjt:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFQTKLAGGPGGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGAAATGCGCCCACAATTGGAGATAGAGGTTAGCGGAGCAAAGAGTAGAAGTTGCAGATTTGCACCCACATTTGATCCTGAGAATGTGGAATTTGCATTTGAATT
GCGCCCGCAAACTGATGAGGAAACCCAACTGGGCTTTCCGACAGAATTCCGAGATTCGCGAGATCTTCACAGAATCATCCGAAAATCCCAAATCTCAGCACAGGATTTTC
GAGCAAAGCAGGGGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAACTTGAATCCGAAGCTCTATTTGCATGGAAAGACAAAGCTATCTATGGTTCT
AATGCTCGGTTTTGGTTGTTTGACAAGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCC
AACGTCTGCTGAAAGTTCAAGAACAAGCTCCAGTTCAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCAGACTA
AGCTAGCAGGTGGTCCGGGAGGGGGTCCATTAGGTCACACCGGTAGCTCGTATAAGGTGTTGAGGATTTTCCAACGTAGAGAAGGTTCTGTAGCTGCTGTGATTTTCAGC
AAATCCCCAGAGAAAAGACGTTTTCGGTCAAGACTTCAAGCATTAGCCCTTGCGTTTTTAGGCATTAAATGTAAATCGATTGTCCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGAAATGCGCCCACAATTGGAGATAGAGGTTAGCGGAGCAAAGAGTAGAAGTTGCAGATTTGCACCCACATTTGATCCTGAGAATGTGGAATTTGCATTTGAATT
GCGCCCGCAAACTGATGAGGAAACCCAACTGGGCTTTCCGACAGAATTCCGAGATTCGCGAGATCTTCACAGAATCATCCGAAAATCCCAAATCTCAGCACAGGATTTTC
GAGCAAAGCAGGGGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAACTTGAATCCGAAGCTCTATTTGCATGGAAAGACAAAGCTATCTATGGTTCT
AATGCTCGGTTTTGGTTGTTTGACAAGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCC
AACGTCTGCTGAAAGTTCAAGAACAAGCTCCAGTTCAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCAGACTA
AGCTAGCAGGTGGTCCGGGAGGGGGTCCATTAGGTCACACCGGTAGCTCGTATAAGGTGTTGAGGATTTTCCAACGTAGAGAAGGTTCTGTAGCTGCTGTGATTTTCAGC
AAATCCCCAGAGAAAAGACGTTTTCGGTCAAGACTTCAAGCATTAGCCCTTGCGTTTTTAGGCATTAAATGTAAATCGATTGTCCTCTAA
Protein sequenceShow/hide protein sequence
MVEMRPQLEIEVSGAKSRSCRFAPTFDPENVEFAFELRPQTDEETQLGFPTEFRDSRDLHRIIRKSQISAQDFRAKQGDLWFSLVFRAFWGVQLESEALFAWKDKAIYGS
NARFWLFDKPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFQTKLAGGPGGGPLGHTGSSYKVLRIFQRREGSVAAVIFS
KSPEKRRFRSRLQALALAFLGIKCKSIVL