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Spg002345 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002345
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold5:7522668..7527778
RNA-Seq ExpressionSpg002345
SyntenySpg002345
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025376.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.9e-2860.32Show/hide
Query:  SKEDGALKEIKQMTFVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEIND
        SKE     EI Q T VF+RI+PSTTR SVFQR+SMA   EE+Q  T   TR S F+RLS+STS+K RPST+ FDRLK+T+DQ +R++ +S+ K F E ND
Subjt:  SKEDGALKEIKQMTFVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEIND

Query:  DNKLHSTTPSRMKRKFSVLINTEGSL
        D+K+HS  PSRMK+K  V INTEGSL
Subjt:  DNKLHSTTPSRMKRKFSVLINTEGSL

KAA0046209.1 gag protease polyprotein [Cucumis melo var. makuwa]2.2e-2861.11Show/hide
Query:  SKEDGALKEIKQMTFVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEIND
        SKE     EI Q T VF+RI+PSTTR SVFQR+SMA+  EE+Q  T   TR S F+RLS+STS+K RPST+ FDRLK+T+DQ +R++ +S+ K F E ND
Subjt:  SKEDGALKEIKQMTFVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEIND

Query:  DNKLHSTTPSRMKRKFSVLINTEGSL
        D+K+HS  PSRMKRK  V INTEGSL
Subjt:  DNKLHSTTPSRMKRKFSVLINTEGSL

TYK09793.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.4e-2961.9Show/hide
Query:  SKEDGALKEIKQMTFVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEIND
        SKE     EI Q T VF+RI+PSTTR SVFQR+SMA   EE+Q  T   TR S F+RLS+STS+K RPST+ FDRLK+T+DQ +R++ +S+ K F E ND
Subjt:  SKEDGALKEIKQMTFVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEIND

Query:  DNKLHSTTPSRMKRKFSVLINTEGSL
        D+K+HS  PSRMKRK SV INTEGSL
Subjt:  DNKLHSTTPSRMKRKFSVLINTEGSL

TYK09793.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-0441.05Show/hide
Query:  RMTKSAQLEIATVENLMLGKFISLSQQLNETL-SLDVMSVMMTDARTSEEWMAEVEKKISMLLKMVEEKDNEIASLKSQMDSRDAVESKEDGALK
        +++K  +  I   EN  + +  S SQ  +E +   ++MSVM+T+  TSE  M E+EKK++ML+K+VEE+D EIA LK+ ++S DA ES     +K
Subjt:  RMTKSAQLEIATVENLMLGKFISLSQQLNETL-SLDVMSVMMTDARTSEEWMAEVEKKISMLLKMVEEKDNEIASLKSQMDSRDAVESKEDGALK

TYK09793.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.2e-2860.8Show/hide
Query:  KEDGALKEIKQMTFVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEINDD
        KE     EI QMT VF+RI+PSTTR S FQR+SMA+  EE+Q LT   TR S F+RLS+STS+K RPS + FDRLK+T+DQ +R++ + + K F E NDD
Subjt:  KEDGALKEIKQMTFVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEINDD

Query:  NKLHSTTPSRMKRKFSVLINTEGSL
        +K+HS  PSRMKRK SV INTEGSL
Subjt:  NKLHSTTPSRMKRKFSVLINTEGSL

TYK14888.1 gag protease polyprotein [Cucumis melo var. makuwa]4.4e-2961.9Show/hide
Query:  SKEDGALKEIKQMTFVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEIND
        SKE     EI Q T VF+RI+PSTTR SVFQR+SMA   EE+Q  T   TR S F+RLS+STS+K RPST+ FDRLK+T+DQ +R++ +S+ K F E ND
Subjt:  SKEDGALKEIKQMTFVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEIND

Query:  DNKLHSTTPSRMKRKFSVLINTEGSL
        D+K+HS  PSRMKRK SV INTEGSL
Subjt:  DNKLHSTTPSRMKRKFSVLINTEGSL

TrEMBL top hitse value%identityAlignment
A0A5A7SHQ6 Retrotransposon gag protein2.4e-2860.32Show/hide
Query:  SKEDGALKEIKQMTFVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEIND
        SKE     EI Q T VF+RI+PSTTR SVFQR+SMA   EE+Q  T   TR S F+RLS+STS+K RPST+ FDRLK+T+DQ +R++ +S+ K F E ND
Subjt:  SKEDGALKEIKQMTFVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEIND

Query:  DNKLHSTTPSRMKRKFSVLINTEGSL
        D+K+HS  PSRMK+K  V INTEGSL
Subjt:  DNKLHSTTPSRMKRKFSVLINTEGSL

A0A5D3CD55 Ty3-gypsy retrotransposon protein2.1e-2961.9Show/hide
Query:  SKEDGALKEIKQMTFVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEIND
        SKE     EI Q T VF+RI+PSTTR SVFQR+SMA   EE+Q  T   TR S F+RLS+STS+K RPST+ FDRLK+T+DQ +R++ +S+ K F E ND
Subjt:  SKEDGALKEIKQMTFVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEIND

Query:  DNKLHSTTPSRMKRKFSVLINTEGSL
        D+K+HS  PSRMKRK SV INTEGSL
Subjt:  DNKLHSTTPSRMKRKFSVLINTEGSL

A0A5D3CD55 Ty3-gypsy retrotransposon protein8.2e-0541.05Show/hide
Query:  RMTKSAQLEIATVENLMLGKFISLSQQLNETL-SLDVMSVMMTDARTSEEWMAEVEKKISMLLKMVEEKDNEIASLKSQMDSRDAVESKEDGALK
        +++K  +  I   EN  + +  S SQ  +E +   ++MSVM+T+  TSE  M E+EKK++ML+K+VEE+D EIA LK+ ++S DA ES     +K
Subjt:  RMTKSAQLEIATVENLMLGKFISLSQQLNETL-SLDVMSVMMTDARTSEEWMAEVEKKISMLLKMVEEKDNEIASLKSQMDSRDAVESKEDGALK

A0A5D3CD55 Ty3-gypsy retrotransposon protein1.1e-2861.11Show/hide
Query:  SKEDGALKEIKQMTFVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEIND
        SKE     EI Q T VF+RI+PSTTR SVFQR+SMA+  EE+Q  T   TR S F+RLS+STS+K RPST+ FDRLK+T+DQ +R++ +S+ K F E ND
Subjt:  SKEDGALKEIKQMTFVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEIND

Query:  DNKLHSTTPSRMKRKFSVLINTEGSL
        D+K+HS  PSRMKRK  V INTEGSL
Subjt:  DNKLHSTTPSRMKRKFSVLINTEGSL

A0A5D3CUI5 Gag protease polyprotein2.1e-2961.9Show/hide
Query:  SKEDGALKEIKQMTFVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEIND
        SKE     EI Q T VF+RI+PSTTR SVFQR+SMA   EE+Q  T   TR S F+RLS+STS+K RPST+ FDRLK+T+DQ +R++ +S+ K F E ND
Subjt:  SKEDGALKEIKQMTFVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEIND

Query:  DNKLHSTTPSRMKRKFSVLINTEGSL
        D+K+HS  PSRMKRK SV INTEGSL
Subjt:  DNKLHSTTPSRMKRKFSVLINTEGSL

A0A5D3DZZ8 Retrotransposon gag protein1.1e-2860.8Show/hide
Query:  KEDGALKEIKQMTFVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEINDD
        KE     EI QMT VF+RI+PSTTR S FQR+SMA+  EE+Q LT   TR S F+RLS+STS+K RPS + FDRLK+T+DQ +R++ + + K F E NDD
Subjt:  KEDGALKEIKQMTFVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEINDD

Query:  NKLHSTTPSRMKRKFSVLINTEGSL
        +K+HS  PSRMKRK SV INTEGSL
Subjt:  NKLHSTTPSRMKRKFSVLINTEGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCAGACGCATGACAAAATCTGCTCAACTTGAAATCGCCACTGTAGAAAATCTGATGCTTGGCAAATTCATCTCTCTTTCTCAGCAACTAAATGAAACATTGAGTCT
CGACGTAATGTCTGTTATGATGACTGATGCAAGAACTAGTGAAGAATGGATGGCTGAAGTTGAGAAGAAAATTAGCATGTTACTGAAAATGGTTGAAGAGAAAGACAACG
AAATTGCCTCTCTCAAAAGCCAAATGGACAGTCGGGATGCTGTTGAATCAAAAGAAGATGGTGCATTGAAGGAAATCAAGCAAATGACTTTTGTCTTTAATCGCATTGAG
CCTTCAACTACTAGACTTTCGGTCTTCCAAAGAATAAGTATGGCTATAGCAGGAGAAGAAGATCAAAGTTTGACGTCCGCCATCACTCGACATTCAGTTTTCCAAAGACT
AAGCGTCTCTACATCAAGAAAGTGTCGACCTTCAACAACTGTTTTTGATCGCCTCAAAGTAACAAGCGACCAACATGAAAGAAAGGTGGACAATTCAGAAGTTAAATTGT
TCGATGAAATAAACGATGACAATAAGCTTCATAGTACCACGCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAACACAGAAGGTTCTTTGAAGGCACAGCTCGCC
CTGGACAAGCATGCTCAAGACACCTTACTCCATCTTCAAAGATTGACAGTCAACAGCTTTGTTTCATCTTCAAAGGTTGACAGTGGTGAAATCACTGCAAATGAATCTGA
TGACGATTACTGCAGCAAATCTCGTGACTACCCCTGCAGGCTACTCAGATCACCCAATAAAATGGAGACTGGCGAATCTGGTGACTACCCCTACAGGTTACTCAGATCAC
CCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGTAGGCGAATCTGGCTACTCAGATCACCCAATAAATATAGGGACTGGTCTAGCAGGAATGCATCACTGAAG
GCAAGTCTGGTGACTACCCCTGCAGGCTACTCAGATCACCCAATAAAATGGGTG
mRNA sequenceShow/hide mRNA sequence
ATGCTCAGACGCATGACAAAATCTGCTCAACTTGAAATCGCCACTGTAGAAAATCTGATGCTTGGCAAATTCATCTCTCTTTCTCAGCAACTAAATGAAACATTGAGTCT
CGACGTAATGTCTGTTATGATGACTGATGCAAGAACTAGTGAAGAATGGATGGCTGAAGTTGAGAAGAAAATTAGCATGTTACTGAAAATGGTTGAAGAGAAAGACAACG
AAATTGCCTCTCTCAAAAGCCAAATGGACAGTCGGGATGCTGTTGAATCAAAAGAAGATGGTGCATTGAAGGAAATCAAGCAAATGACTTTTGTCTTTAATCGCATTGAG
CCTTCAACTACTAGACTTTCGGTCTTCCAAAGAATAAGTATGGCTATAGCAGGAGAAGAAGATCAAAGTTTGACGTCCGCCATCACTCGACATTCAGTTTTCCAAAGACT
AAGCGTCTCTACATCAAGAAAGTGTCGACCTTCAACAACTGTTTTTGATCGCCTCAAAGTAACAAGCGACCAACATGAAAGAAAGGTGGACAATTCAGAAGTTAAATTGT
TCGATGAAATAAACGATGACAATAAGCTTCATAGTACCACGCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAACACAGAAGGTTCTTTGAAGGCACAGCTCGCC
CTGGACAAGCATGCTCAAGACACCTTACTCCATCTTCAAAGATTGACAGTCAACAGCTTTGTTTCATCTTCAAAGGTTGACAGTGGTGAAATCACTGCAAATGAATCTGA
TGACGATTACTGCAGCAAATCTCGTGACTACCCCTGCAGGCTACTCAGATCACCCAATAAAATGGAGACTGGCGAATCTGGTGACTACCCCTACAGGTTACTCAGATCAC
CCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGTAGGCGAATCTGGCTACTCAGATCACCCAATAAATATAGGGACTGGTCTAGCAGGAATGCATCACTGAAG
GCAAGTCTGGTGACTACCCCTGCAGGCTACTCAGATCACCCAATAAAATGGGTG
Protein sequenceShow/hide protein sequence
MLRRMTKSAQLEIATVENLMLGKFISLSQQLNETLSLDVMSVMMTDARTSEEWMAEVEKKISMLLKMVEEKDNEIASLKSQMDSRDAVESKEDGALKEIKQMTFVFNRIE
PSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEINDDNKLHSTTPSRMKRKFSVLINTEGSLKAQLA
LDKHAQDTLLHLQRLTVNSFVSSSKVDSGEITANESDDDYCSKSRDYPCRLLRSPNKMETGESGDYPYRLLRSPNKMGTGLAGVHHCRRIWLLRSPNKYRDWSSRNASLK
ASLVTTPAGYSDHPIKWV