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Spg002394 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002394
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptioncyclic nucleotide-gated ion channel 1-like isoform X2
Genome locationscaffold6:838633..844208
RNA-Seq ExpressionSpg002394
SyntenySpg002394
Gene Ontology termsGO:0006811 - ion transport (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008439337.1 PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo]2.7e-0664.91Show/hide
Query:  SPNPPSSTFAAGPKSTKFLISDHLKVTLALSRPVNFQTKLLSF-IMAVRGFPCKFYS
        SPNPPSST AAGP  T+FL SDHL+ TL   R VNF+ K++SF IMAV  F  KFYS
Subjt:  SPNPPSSTFAAGPKSTKFLISDHLKVTLALSRPVNFQTKLLSF-IMAVRGFPCKFYS
TrEMBL top hitse value%identityAlignment
A0A1S3AZ79 cyclic nucleotide-gated ion channel 1-like isoform X21.3e-0664.91Show/hide
Query:  SPNPPSSTFAAGPKSTKFLISDHLKVTLALSRPVNFQTKLLSF-IMAVRGFPCKFYS
        SPNPPSST AAGP  T+FL SDHL+ TL   R VNF+ K++SF IMAV  F  KFYS
Subjt:  SPNPPSSTFAAGPKSTKFLISDHLKVTLALSRPVNFQTKLLSF-IMAVRGFPCKFYS
A0A1S3AZ82 cyclic nucleotide-gated ion channel 1-like isoform X36.0e-0464.44Show/hide
Query:  SPNPPSSTFAAGPKSTKFLISDHLKVTLALSRPVNFQTKLLSFIM
        SPNPPSST AAGP  T+FL SDHL+ TL   R VNF+ K++SFI+
Subjt:  SPNPPSSTFAAGPKSTKFLISDHLKVTLALSRPVNFQTKLLSFIM
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCTCTGTCGTTGACAAATCCCACAAATGCAGAGACAAAACTCTTCAGTCCAAACCCACCTTCTTCGACCTTCGCCGCGGGTCCCAAAAGCACCAAATTTCTCAT
TTCCGATCATCTAAAAGTCACACTCGCCTTGAGTCGACCAGTCAATTTTCAGACGAAACTTTTATCATTCATAATGGCAGTTCGGGGTTTTCCTTGCAAGTTTTATAGCT
TCAACGAGGGAGTCGGTGTTTTCTTTAATTTCTTGCTGTTCCCTTTGGTGGGTATGGTTGATTTCTCGTGCATTACGAACTTCCCTAATCTGGTTGGTTTGAAATGGATG
CTTGGTGATCTTACTGTGGCTATGGATAATCTTCCTGTATTTCCTCTGTGTGATTTAGTGGGTTTCAAGATCCCAGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGTCTCTGTCGTTGACAAATCCCACAAATGCAGAGACAAAACTCTTCAGTCCAAACCCACCTTCTTCGACCTTCGCCGCGGGTCCCAAAAGCACCAAATTTCTCAT
TTCCGATCATCTAAAAGTCACACTCGCCTTGAGTCGACCAGTCAATTTTCAGACGAAACTTTTATCATTCATAATGGCAGTTCGGGGTTTTCCTTGCAAGTTTTATAGCT
TCAACGAGGGAGTCGGTGTTTTCTTTAATTTCTTGCTGTTCCCTTTGGTGGGTATGGTTGATTTCTCGTGCATTACGAACTTCCCTAATCTGGTTGGTTTGAAATGGATG
CTTGGTGATCTTACTGTGGCTATGGATAATCTTCCTGTATTTCCTCTGTGTGATTTAGTGGGTTTCAAGATCCCAGGCTAG
Protein sequenceShow/hide protein sequence
MSSLSLTNPTNAETKLFSPNPPSSTFAAGPKSTKFLISDHLKVTLALSRPVNFQTKLLSFIMAVRGFPCKFYSFNEGVGVFFNFLLFPLVGMVDFSCITNFPNLVGLKWM
LGDLTVAMDNLPVFPLCDLVGFKIPG