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Spg002495 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002495
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPectin lyase-like superfamily protein
Genome locationscaffold6:4409143..4412422
RNA-Seq ExpressionSpg002495
SyntenySpg002495
Gene Ontology termsGO:0008152 - metabolic process (biological process)
GO:0004866 - endopeptidase inhibitor activity (molecular function)
GO:0016798 - hydrolase activity, acting on glycosyl bonds (molecular function)
InterPro domainsIPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022141107.1 probable polygalacturonase At3g15720 [Momordica charantia]1.3e-3164.55Show/hide
Query:  ASSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQI--HV--------QGAWPSNSENKWIQFVGVDGHSV
        AS  FNVLDYGAIGN +ADDSQAFLRAW DVCGA EG P LH P GK Y+LKPLKFQGPCKSKQ+  H+        +G+WP     +WIQF  +DG  V
Subjt:  ASSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQI--HV--------QGAWPSNSENKWIQFVGVDGHSV

Query:  DGAGQFDGQG
        +G GQFDGQG
Subjt:  DGAGQFDGQG

XP_022141108.1 probable polygalacturonase At3g15720 [Momordica charantia]2.2e-3163.3Show/hide
Query:  SSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQI--HVQG--------AWPSNSENKWIQFVGVDGHSVD
        S +FNVLDYGAIGN + DDSQAFLRAW D CGA EG P LH PVGK Y+L PLKFQGPCKSKQ+  H+ G        +WPS+  ++WIQF  +DG  V+
Subjt:  SSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQI--HVQG--------AWPSNSENKWIQFVGVDGHSVD

Query:  GAGQFDGQG
        G+GQFDGQG
Subjt:  GAGQFDGQG

XP_022922566.1 probable polygalacturonase At3g15720 [Cucurbita moschata]2.5e-3059.63Show/hide
Query:  ASSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQIHVQ----------GAWPSNSENKWIQFVGVDGHSV
        ASS FNVLDYGA+GN + DDSQAFL+ WKDVCGA  G P L VP+GKTYLLKPLKF+GPC  K+++ +           AWPS++E  WIQF+ + G ++
Subjt:  ASSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQIHVQ----------GAWPSNSENKWIQFVGVDGHSV

Query:  DGAGQFDGQ
        +GAGQFDGQ
Subjt:  DGAGQFDGQ

XP_038888676.1 probable polygalacturonase At3g15720 [Benincasa hispida]6.5e-3160.91Show/hide
Query:  ASSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQIHV----------QGAWPSNSENKWIQFVGVDGHSV
        ASS+FNVLDYGAIGN +ADDS+AFL+AW DVCGA E +P LHVP GKTYLL PLKFQGPCKS Q++           +  WPS+  +KW+QF  ++G ++
Subjt:  ASSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQIHV----------QGAWPSNSENKWIQFVGVDGHSV

Query:  DGAGQFDGQG
         GAG+FDGQG
Subjt:  DGAGQFDGQG

XP_038888688.1 probable polygalacturonase At3g15720 [Benincasa hispida]2.5e-3060.36Show/hide
Query:  ASSH-FNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQIHVQ----------GAWPSNSENKWIQFVGVDGHS
        AS H FNVL YGA GN E DDSQAFL+AWKDVC A +G P LHVP+GK+YLL PL FQGPCKSKQ+++Q          GAWP++ ++KWI+F  +DG +
Subjt:  ASSH-FNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQIHVQ----------GAWPSNSENKWIQFVGVDGHS

Query:  VDGAGQFDGQG
        ++G GQ DGQG
Subjt:  VDGAGQFDGQG

TrEMBL top hitse value%identityAlignment
A0A1S3BYT5 probable polygalacturonase At3g157204.5e-3059.09Show/hide
Query:  ASSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQI----------HVQGAWPSNSENKWIQFVGVDGHSV
        +SS FNVLDYGAIGN + DDS+AFL+AW DVCGA + +P LHVP GKTYLL PLKFQGPCKS Q+            +  WP++ ++KW+QFV V+G +V
Subjt:  ASSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQI----------HVQGAWPSNSENKWIQFVGVDGHSV

Query:  DGAGQFDGQG
         G G+FDGQG
Subjt:  DGAGQFDGQG

A0A5D3CYS8 Putative polygalacturonase4.5e-3059.09Show/hide
Query:  ASSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQI----------HVQGAWPSNSENKWIQFVGVDGHSV
        +SS FNVLDYGAIGN + DDS+AFL+AW DVCGA + +P LHVP GKTYLL PLKFQGPCKS Q+            +  WP++ ++KW+QFV V+G +V
Subjt:  ASSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQI----------HVQGAWPSNSENKWIQFVGVDGHSV

Query:  DGAGQFDGQG
         G G+FDGQG
Subjt:  DGAGQFDGQG

A0A6J1CIX8 probable polygalacturonase At3g157206.3e-3264.55Show/hide
Query:  ASSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQI--HV--------QGAWPSNSENKWIQFVGVDGHSV
        AS  FNVLDYGAIGN +ADDSQAFLRAW DVCGA EG P LH P GK Y+LKPLKFQGPCKSKQ+  H+        +G+WP     +WIQF  +DG  V
Subjt:  ASSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQI--HV--------QGAWPSNSENKWIQFVGVDGHSV

Query:  DGAGQFDGQG
        +G GQFDGQG
Subjt:  DGAGQFDGQG

A0A6J1CJJ6 probable polygalacturonase At3g157201.1e-3163.3Show/hide
Query:  SSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQI--HVQG--------AWPSNSENKWIQFVGVDGHSVD
        S +FNVLDYGAIGN + DDSQAFLRAW D CGA EG P LH PVGK Y+L PLKFQGPCKSKQ+  H+ G        +WPS+  ++WIQF  +DG  V+
Subjt:  SSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQI--HVQG--------AWPSNSENKWIQFVGVDGHSVD

Query:  GAGQFDGQG
        G+GQFDGQG
Subjt:  GAGQFDGQG

A0A6J1E4H0 probable polygalacturonase At3g157201.2e-3059.63Show/hide
Query:  ASSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQIHVQ----------GAWPSNSENKWIQFVGVDGHSV
        ASS FNVLDYGA+GN + DDSQAFL+ WKDVCGA  G P L VP+GKTYLLKPLKF+GPC  K+++ +           AWPS++E  WIQF+ + G ++
Subjt:  ASSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQIHVQ----------GAWPSNSENKWIQFVGVDGHSV

Query:  DGAGQFDGQ
        +GAGQFDGQ
Subjt:  DGAGQFDGQ

SwissProt top hitse value%identityAlignment
O23147 Polygalacturonase ADPG17.8e-1136.7Show/hide
Query:  SSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKS-KQIHVQGAWPSNS-------ENKWIQFVGVDGHSVDG-
        +S  +V ++GA G+ + DD+QAF +AWK  C +  G     VP GKTYLLK  +F+GPCKS +   + G   +++       +N W+    V+  S+DG 
Subjt:  SSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKS-KQIHVQGAWPSNS-------ENKWIQFVGVDGHSVDG-

Query:  -AGQFDGQG
          G  +G G
Subjt:  -AGQFDGQG

Q02096 Polygalacturonase3.5e-1133.63Show/hide
Query:  ERKASSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSK-QIHVQGA---------WPSNSENKWIQFVGVDG
        E    +  +V D+GA G+   DD++AF +AWKD C +     +L VP  K YLLK + F GPCKS  ++ ++G          W  ++  +WI+F  +  
Subjt:  ERKASSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSK-QIHVQGA---------WPSNSENKWIQFVGVDG

Query:  HSVDGAGQFDGQG
         +++G G  +G G
Subjt:  HSVDGAGQFDGQG

Q8RY29 Polygalacturonase ADPG24.1e-1240.95Show/hide
Query:  NVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKS-KQIHVQGAWPSNSE-------NKWIQFVGVDGHSVDG--AGQ
        +V D+GA G+ + DD+QAF+ AWK  C +  G   L VP G TYLLK ++  GPC S   + + G   ++ +       +KWI F GV+  SVDG   G 
Subjt:  NVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKS-KQIHVQGAWPSNSE-------NKWIQFVGVDGHSVDG--AGQ

Query:  FDGQG
         DG G
Subjt:  FDGQG

Q9LW07 Probable polygalacturonase At3g157203.6e-1638.79Show/hide
Query:  FIEERKASSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQIHVQ----------GAWPSNSENKWIQFVG
        F++   +S+  +V  +GA+G+   DDSQAFL+AW+ VC    G     VP G T++L+PLKFQG CKS  + VQ          G W    +++WI F  
Subjt:  FIEERKASSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQIHVQ----------GAWPSNSENKWIQFVG

Query:  VDGHSVDGAGQFDGQG
        ++G  ++G G+ +GQG
Subjt:  VDGHSVDGAGQFDGQG

Q9SFB7 Polygalacturonase QRT25.9e-1138.05Show/hide
Query:  RKASSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQI--HVQG---AWPSNSENK----WIQFVGVDGHS
        R +   FNV  +GA  N   DDS+AF++AW+  C +  G   +  P  + Y+LK + F GPCKS  I   + G   AW + S+ K    WI F  V+   
Subjt:  RKASSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQI--HVQG---AWPSNSENK----WIQFVGVDGHS

Query:  VDGAGQFDGQGVI
        V+G G+ DG G I
Subjt:  VDGAGQFDGQGVI

Arabidopsis top hitse value%identityAlignment
AT3G15720.1 Pectin lyase-like superfamily protein2.6e-1738.79Show/hide
Query:  FIEERKASSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQIHVQ----------GAWPSNSENKWIQFVG
        F++   +S+  +V  +GA+G+   DDSQAFL+AW+ VC    G     VP G T++L+PLKFQG CKS  + VQ          G W    +++WI F  
Subjt:  FIEERKASSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQIHVQ----------GAWPSNSENKWIQFVG

Query:  VDGHSVDGAGQFDGQG
        ++G  ++G G+ +GQG
Subjt:  VDGHSVDGAGQFDGQG

AT3G15720.2 Pectin lyase-like superfamily protein2.6e-1738.79Show/hide
Query:  FIEERKASSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQIHVQ----------GAWPSNSENKWIQFVG
        F++   +S+  +V  +GA+G+   DDSQAFL+AW+ VC    G     VP G T++L+PLKFQG CKS  + VQ          G W    +++WI F  
Subjt:  FIEERKASSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQIHVQ----------GAWPSNSENKWIQFVG

Query:  VDGHSVDGAGQFDGQG
        ++G  ++G G+ +GQG
Subjt:  VDGHSVDGAGQFDGQG

AT4G35670.1 Pectin lyase-like superfamily protein7.4e-1740.74Show/hide
Query:  HFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQIHVQ-----------GAWPSNSENKWIQFVGVDGHSVDG
        ++NVL++ A G+ + DDS+AFL+AW   CG       L +P GKT+LL+P  FQGPCKS  I VQ            AW       WI+F  V G  + G
Subjt:  HFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQIHVQ-----------GAWPSNSENKWIQFVGVDGHSVDG

Query:  AGQFDGQG
        +G  D +G
Subjt:  AGQFDGQG

AT5G27530.1 Pectin lyase-like superfamily protein1.4e-2042.99Show/hide
Query:  FNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQIHVQ-----------GAWPSNSENKWIQFVGVDGHSVDGA
        +NVL +GA G+ + DDS AFL+AW   CG  E    L +P GKTYLL+P++F+GPCKS  I +Q            +W +     WI F GV G  +DG+
Subjt:  FNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQIHVQ-----------GAWPSNSENKWIQFVGVDGHSVDGA

Query:  GQFDGQG
        G  +G+G
Subjt:  GQFDGQG

AT5G39910.1 Pectin lyase-like superfamily protein3.9e-1842.72Show/hide
Query:  FNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQI--HVQG---------AWPSNSE--NKWIQFVGVDGHSVD
        FNVL+YGAIG+  +DDS+AF  AW+D C  I    I+ +P G T+LL+P++F GPCKSK+I   + G          W  N +  ++WI+F  ++G  +D
Subjt:  FNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQI--HVQG---------AWPSNSE--NKWIQFVGVDGHSVD

Query:  GAG
        G G
Subjt:  GAG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTATCGAGGAGAGAAAAGCTTCATCTCATTTTAATGTTCTTGATTATGGAGCAATTGGAAATAGCGAAGCTGATGATTCACAAGCTTTTTTGAGAGCATGGAAGGA
TGTATGTGGAGCAATAGAAGGCACTCCAATATTGCATGTACCTGTTGGAAAAACTTACCTGTTGAAGCCTCTCAAATTCCAGGGTCCTTGCAAGTCCAAACAAATCCATG
TTCAAGGTGCATGGCCTAGCAATAGTGAAAATAAATGGATCCAATTTGTTGGAGTGGATGGTCACTCTGTTGATGGAGCAGGACAATTTGATGGCCAAGGTGTTATAGGC
AATTTTGGACCACCCGACGGACAAGGAGCTGACGAGGACGTCCGGGCAAAAATAGGGCTGGGAGACCGACCCAGAGGAAGAACCGACCAAAGGGCCGGGCCAACTTGGCC
CGACCATTCGGCTCGCTTGCGCGGGCCGAGCTCGGTCACCTCCTCTCGGTCCCTAATGCTTCTAGCCGTCCCAGTTTCGCCTGTTGGCGCTGTCTGTGGGGAAGAAAGCT
TGCTAAATCTGCACATCGGTCATTCAATGAGTAAGAGGATGGAAAAGGGAAACCGAAATCCAAGCCCAGAAACTTCGAAAAATAGCCGCCAGCCGCAGAGGTCACGTGAC
GATGATAGCATCCAGGGGTCACCGAGACGAACAGGCCGAGGAGCTGAGGCCGAGGAGAATAGGCTGAGGGGCCGAGGTCGAGGAGAGGATTCTGACGCCAAAATTGCCGC
CCTTGAGGATAAGGTAAAGGGAATGAATCAGAGTTTGTCTAGAATACTCCAAATCCTGGATAAACCCGGCCCTAGCACCAAACTCCATGAGGGGGGCTTGATTAGAGACC
CAAAGAAGGGGAAGGAGCCACTCGAGTACGTGGATGAATCAGAGACAGAATCGAAAGGAAAGGAGACCAACTGCGCAACCAGCAAGACGCAGCCCACAGTTTCCACACCA
AGATACAGTCATTCCGGGACAGACCTGAGAAATCTGATCGAGGAGAAGCGCAGAAGTACCAAAACTGCTGAATCCGAGGCCAGAGCTGCCGAAGCTGAAGCCAGGGCTGC
CTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTATCGAGGAGAGAAAAGCTTCATCTCATTTTAATGTTCTTGATTATGGAGCAATTGGAAATAGCGAAGCTGATGATTCACAAGCTTTTTTGAGAGCATGGAAGGA
TGTATGTGGAGCAATAGAAGGCACTCCAATATTGCATGTACCTGTTGGAAAAACTTACCTGTTGAAGCCTCTCAAATTCCAGGGTCCTTGCAAGTCCAAACAAATCCATG
TTCAAGGTGCATGGCCTAGCAATAGTGAAAATAAATGGATCCAATTTGTTGGAGTGGATGGTCACTCTGTTGATGGAGCAGGACAATTTGATGGCCAAGGTGTTATAGGC
AATTTTGGACCACCCGACGGACAAGGAGCTGACGAGGACGTCCGGGCAAAAATAGGGCTGGGAGACCGACCCAGAGGAAGAACCGACCAAAGGGCCGGGCCAACTTGGCC
CGACCATTCGGCTCGCTTGCGCGGGCCGAGCTCGGTCACCTCCTCTCGGTCCCTAATGCTTCTAGCCGTCCCAGTTTCGCCTGTTGGCGCTGTCTGTGGGGAAGAAAGCT
TGCTAAATCTGCACATCGGTCATTCAATGAGTAAGAGGATGGAAAAGGGAAACCGAAATCCAAGCCCAGAAACTTCGAAAAATAGCCGCCAGCCGCAGAGGTCACGTGAC
GATGATAGCATCCAGGGGTCACCGAGACGAACAGGCCGAGGAGCTGAGGCCGAGGAGAATAGGCTGAGGGGCCGAGGTCGAGGAGAGGATTCTGACGCCAAAATTGCCGC
CCTTGAGGATAAGGTAAAGGGAATGAATCAGAGTTTGTCTAGAATACTCCAAATCCTGGATAAACCCGGCCCTAGCACCAAACTCCATGAGGGGGGCTTGATTAGAGACC
CAAAGAAGGGGAAGGAGCCACTCGAGTACGTGGATGAATCAGAGACAGAATCGAAAGGAAAGGAGACCAACTGCGCAACCAGCAAGACGCAGCCCACAGTTTCCACACCA
AGATACAGTCATTCCGGGACAGACCTGAGAAATCTGATCGAGGAGAAGCGCAGAAGTACCAAAACTGCTGAATCCGAGGCCAGAGCTGCCGAAGCTGAAGCCAGGGCTGC
CTAG
Protein sequenceShow/hide protein sequence
MFIEERKASSHFNVLDYGAIGNSEADDSQAFLRAWKDVCGAIEGTPILHVPVGKTYLLKPLKFQGPCKSKQIHVQGAWPSNSENKWIQFVGVDGHSVDGAGQFDGQGVIG
NFGPPDGQGADEDVRAKIGLGDRPRGRTDQRAGPTWPDHSARLRGPSSVTSSRSLMLLAVPVSPVGAVCGEESLLNLHIGHSMSKRMEKGNRNPSPETSKNSRQPQRSRD
DDSIQGSPRRTGRGAEAEENRLRGRGRGEDSDAKIAALEDKVKGMNQSLSRILQILDKPGPSTKLHEGGLIRDPKKGKEPLEYVDESETESKGKETNCATSKTQPTVSTP
RYSHSGTDLRNLIEEKRRSTKTAESEARAAEAEARAA