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Spg002508 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002508
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold6:4218656..4220314
RNA-Seq ExpressionSpg002508
SyntenySpg002508
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032390.1 uncharacterized protein E6C27_scaffold219G002650 [Cucumis melo var. makuwa]1.5e-0448.94Show/hide
Query:  FLHCSYAKKGWPFLFKEFGVDYCLSRRIDDWLVEVLDGRCFKGKRKI
        FLHC +  KG   L   FG+D C  ++IDDW+++ L+GR F GK KI
Subjt:  FLHCSYAKKGWPFLFKEFGVDYCLSRRIDDWLVEVLDGRCFKGKRKI

KAA0056469.1 uncharacterized protein E6C27_scaffold186G002430 [Cucumis melo var. makuwa]6.7e-0554.35Show/hide
Query:  FLHCSYAKKGWPFLFKEFGVDYCLSRRIDDWLVEVLDGRCFKGKRK
        FLHC  A KGW   F  FGVD  L  +IDDW++E LDGR F  + K
Subjt:  FLHCSYAKKGWPFLFKEFGVDYCLSRRIDDWLVEVLDGRCFKGKRK

XP_030505044.1 uncharacterized protein LOC115720016 [Cannabis sativa]7.4e-0436.62Show/hide
Query:  FLHCSYAKKGWPFLFKEFGVDYCLSRRIDDWLVEVLDGRCFKGKRKISWRCATWALLLNLWKERNLWTFED
        FLHC ++ K W  L +EFG+ + L R +   LV  + G     ++ I W+ A  A +  +W ERN   FED
Subjt:  FLHCSYAKKGWPFLFKEFGVDYCLSRRIDDWLVEVLDGRCFKGKRKISWRCATWALLLNLWKERNLWTFED

TrEMBL top hitse value%identityAlignment
A0A2N9EL26 Reverse transcriptase domain-containing protein1.6e-0440.85Show/hide
Query:  LHCSYAKKGWPFLFKEFGVDYCLSRRIDDWLVEVLDGRCFKGKRKIS-WRCATWALLLNLWKERNLWTFED
        LHCS A + W F+FK+FGVD+ +SR + D   ++   R + GK     W  A   ++ +LW+ERN  TFE+
Subjt:  LHCSYAKKGWPFLFKEFGVDYCLSRRIDDWLVEVLDGRCFKGKRKIS-WRCATWALLLNLWKERNLWTFED

A0A2N9HJE0 Chromo domain-containing protein4.7e-0431.94Show/hide
Query:  FLHCSYAKKGWPFLFKEFGVDYCLSRRIDDWLVEVLDGRCFKGKRKISWRCATWALLLNLWKERNLWTFEDK
        F+HC  AK+ W  +   FGV + + +++ D L+    G   +      W+     L+ ++W+ERNLWTFE +
Subjt:  FLHCSYAKKGWPFLFKEFGVDYCLSRRIDDWLVEVLDGRCFKGKRKISWRCATWALLLNLWKERNLWTFEDK

A0A5A7SNM9 Uncharacterized protein7.2e-0548.94Show/hide
Query:  FLHCSYAKKGWPFLFKEFGVDYCLSRRIDDWLVEVLDGRCFKGKRKI
        FLHC +  KG   L   FG+D C  ++IDDW+++ L+GR F GK KI
Subjt:  FLHCSYAKKGWPFLFKEFGVDYCLSRRIDDWLVEVLDGRCFKGKRKI

A0A5D3E019 zf-RVT domain-containing protein3.2e-0554.35Show/hide
Query:  FLHCSYAKKGWPFLFKEFGVDYCLSRRIDDWLVEVLDGRCFKGKRK
        FLHC  A KGW   F  FGVD  L  +IDDW++E LDGR F  + K
Subjt:  FLHCSYAKKGWPFLFKEFGVDYCLSRRIDDWLVEVLDGRCFKGKRK

A0A803PZR8 Uncharacterized protein3.6e-0436.62Show/hide
Query:  FLHCSYAKKGWPFLFKEFGVDYCLSRRIDDWLVEVLDGRCFKGKRKISWRCATWALLLNLWKERNLWTFED
        FLHC ++ K W  L +EFG+ + L R +   LV  + G     ++ I W+ A  A +  +W ERN   FED
Subjt:  FLHCSYAKKGWPFLFKEFGVDYCLSRRIDDWLVEVLDGRCFKGKRKISWRCATWALLLNLWKERNLWTFED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACGTCGTGAAGTTCGGGAATCCGACTCCAAGCGCTACCGTTCCAGATTCGATAGAGAACCCAGGTACCCTCCTCTCCTTTCCCGATTGCATCTCCTCATCTTAAT
GTCTCTAAGTTTATTGGCTGATGAAGAATCTGTTCGCTTTAAATGGATTGTCGTTGCGTTAGCTTCCGTTGTGATGCTGGGTGGCCATGATTTTGCCCCAATATGCTGCT
TGAGTGTCGGCGTGCGTGATAATTTGTTGATTATGTTTCTTGTTGCCTTTGTCTTAGAGATGAGGAGACGATCACCCATCTCTTTTCTTCATTGTTCATATGCTAAGAAG
GGTTGGCCGTTTCTTTTCAAGGAGTTTGGTGTAGACTATTGCTTGTCGAGAAGGATTGATGATTGGCTTGTGGAAGTGTTAGATGGTAGGTGCTTTAAAGGAAAAAGGAA
GATTAGTTGGCGTTGTGCTACTTGGGCGCTTTTGTTGAACCTTTGGAAAGAAAGAAACCTATGGACTTTTGAAGATAAGTTTTGGCTTTGTTTGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCACGTCGTGAAGTTCGGGAATCCGACTCCAAGCGCTACCGTTCCAGATTCGATAGAGAACCCAGGTACCCTCCTCTCCTTTCCCGATTGCATCTCCTCATCTTAAT
GTCTCTAAGTTTATTGGCTGATGAAGAATCTGTTCGCTTTAAATGGATTGTCGTTGCGTTAGCTTCCGTTGTGATGCTGGGTGGCCATGATTTTGCCCCAATATGCTGCT
TGAGTGTCGGCGTGCGTGATAATTTGTTGATTATGTTTCTTGTTGCCTTTGTCTTAGAGATGAGGAGACGATCACCCATCTCTTTTCTTCATTGTTCATATGCTAAGAAG
GGTTGGCCGTTTCTTTTCAAGGAGTTTGGTGTAGACTATTGCTTGTCGAGAAGGATTGATGATTGGCTTGTGGAAGTGTTAGATGGTAGGTGCTTTAAAGGAAAAAGGAA
GATTAGTTGGCGTTGTGCTACTTGGGCGCTTTTGTTGAACCTTTGGAAAGAAAGAAACCTATGGACTTTTGAAGATAAGTTTTGGCTTTGTTTGGAATGA
Protein sequenceShow/hide protein sequence
MSRREVRESDSKRYRSRFDREPRYPPLLSRLHLLILMSLSLLADEESVRFKWIVVALASVVMLGGHDFAPICCLSVGVRDNLLIMFLVAFVLEMRRRSPISFLHCSYAKK
GWPFLFKEFGVDYCLSRRIDDWLVEVLDGRCFKGKRKISWRCATWALLLNLWKERNLWTFEDKFWLCLE