CuGenDBv2

Gene ID	Spg002512
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Mediator of RNA polymerase II transcription subunit 28
Genome location	scaffold6:4550009..4553625
RNA-Seq Expression	Spg002512
Synteny	Spg002512
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0016592 - mediator complex (cellular component)
InterPro domains	IPR034456 - Mediator of RNA polymerase II transcription subunit 28

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004152267.1 mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus]

7.0e-58

70.43

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Query:  MAERQPLDQQHQLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQQVYSRCLLQLLDNYSSIIWFAPVYNGYFSEFSICCADRQ
        MAERQP+DQQH LDPQ QSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ                                         
Subjt:  MAERQPLDQQHQLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQQVYSRCLLQLLDNYSSIIWFAPVYNGYFSEFSICCADRQ

Query:  LWGNFDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV
             DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEEL++KN+IIKKQE+LIEGW+KDLK+QLDKHNNELEKV
Subjt:  LWGNFDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV

XP_008454378.1 PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo]

4.9e-59

72.58

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Query:  MAERQPLDQQHQLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQQVYSRCLLQLLDNYSSIIWFAPVYNGYFSEFSICCADRQ
        MAERQ LDQQH LDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ                                         
Subjt:  MAERQPLDQQHQLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQQVYSRCLLQLLDNYSSIIWFAPVYNGYFSEFSICCADRQ

Query:  LWGNFDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV
             DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEEL++KNDIIKKQERLIEGW+KDLKEQLDKHNNELEKV
Subjt:  LWGNFDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV

XP_022149222.1 mediator of RNA polymerase II transcription subunit 28 [Momordica charantia]

1.3e-56

69.89

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Query:  MAERQPLDQQHQLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQQVYSRCLLQLLDNYSSIIWFAPVYNGYFSEFSICCADRQ
        MA+RQP+DQQHQLDPQ QS QSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ                                         
Subjt:  MAERQPLDQQHQLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQQVYSRCLLQLLDNYSSIIWFAPVYNGYFSEFSICCADRQ

Query:  LWGNFDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV
             DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEEL+LKNDIIKK ERLIEGW+KDLK+QL KHNNELEKV
Subjt:  LWGNFDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV

XP_022922953.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata]

7.0e-58

70.43

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Query:  MAERQPLDQQHQLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQQVYSRCLLQLLDNYSSIIWFAPVYNGYFSEFSICCADRQ
        MAERQPLDQQ+Q+DPQ QSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ                                         
Subjt:  MAERQPLDQQHQLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQQVYSRCLLQLLDNYSSIIWFAPVYNGYFSEFSICCADRQ

Query:  LWGNFDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV
             DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEEL+LK+DIIKKQERLIEGW+KDLK+QLDKHNNELEKV
Subjt:  LWGNFDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV

XP_038904970.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida]

4.1e-58

71.51

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Query:  MAERQPLDQQHQLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQQVYSRCLLQLLDNYSSIIWFAPVYNGYFSEFSICCADRQ
        MAERQPLDQQH LDPQ QSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ                                         
Subjt:  MAERQPLDQQHQLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQQVYSRCLLQLLDNYSSIIWFAPVYNGYFSEFSICCADRQ

Query:  LWGNFDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV
             DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEEL+LKN+IIKKQERLIEGW+KDLK+QLDKHNNELEKV
Subjt:  LWGNFDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KT19 Uncharacterized protein

3.4e-58

70.43

Show/hide

Query:  MAERQPLDQQHQLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQQVYSRCLLQLLDNYSSIIWFAPVYNGYFSEFSICCADRQ
        MAERQP+DQQH LDPQ QSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ                                         
Subjt:  MAERQPLDQQHQLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQQVYSRCLLQLLDNYSSIIWFAPVYNGYFSEFSICCADRQ

Query:  LWGNFDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV
             DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEEL++KN+IIKKQE+LIEGW+KDLK+QLDKHNNELEKV
Subjt:  LWGNFDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV

A0A1S3BZ89 mediator of RNA polymerase II transcription subunit 28

2.4e-59

72.58

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Query:  MAERQPLDQQHQLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQQVYSRCLLQLLDNYSSIIWFAPVYNGYFSEFSICCADRQ
        MAERQ LDQQH LDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ                                         
Subjt:  MAERQPLDQQHQLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQQVYSRCLLQLLDNYSSIIWFAPVYNGYFSEFSICCADRQ

Query:  LWGNFDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV
             DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEEL++KNDIIKKQERLIEGW+KDLKEQLDKHNNELEKV
Subjt:  LWGNFDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV

A0A5A7TRZ8 Mediator of RNA polymerase II transcription subunit 28

2.4e-59

72.58

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Query:  MAERQPLDQQHQLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQQVYSRCLLQLLDNYSSIIWFAPVYNGYFSEFSICCADRQ
        MAERQ LDQQH LDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ                                         
Subjt:  MAERQPLDQQHQLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQQVYSRCLLQLLDNYSSIIWFAPVYNGYFSEFSICCADRQ

Query:  LWGNFDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV
             DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEEL++KNDIIKKQERLIEGW+KDLKEQLDKHNNELEKV
Subjt:  LWGNFDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV

A0A6J1E897 mediator of RNA polymerase II transcription subunit 28

3.4e-58

70.43

Show/hide

Query:  MAERQPLDQQHQLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQQVYSRCLLQLLDNYSSIIWFAPVYNGYFSEFSICCADRQ
        MAERQPLDQQ+Q+DPQ QSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ                                         
Subjt:  MAERQPLDQQHQLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQQVYSRCLLQLLDNYSSIIWFAPVYNGYFSEFSICCADRQ

Query:  LWGNFDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV
             DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEEL+LK+DIIKKQERLIEGW+KDLK+QLDKHNNELEKV
Subjt:  LWGNFDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV

A0A6J1JAT8 mediator of RNA polymerase II transcription subunit 28

3.4e-58

70.43

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Query:  MAERQPLDQQHQLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQQVYSRCLLQLLDNYSSIIWFAPVYNGYFSEFSICCADRQ
        MAERQPLDQQ+Q+DPQ QSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ                                         
Subjt:  MAERQPLDQQHQLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQQVYSRCLLQLLDNYSSIIWFAPVYNGYFSEFSICCADRQ

Query:  LWGNFDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV
             DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEEL+LK+DIIKKQERLIEGW+KDLK+QLDKHNNELEKV
Subjt:  LWGNFDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV

SwissProt top hits

e value

%identity

Alignment

Q9LFA5 Mediator of RNA polymerase II transcription subunit 28

2.1e-20

62.2

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Query:  DVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV
        DVERHARDFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEEL+ K+++IKK  RL +  +K +KEQ++KH +ELEKV
Subjt:  DVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV

Q9LFA5 Mediator of RNA polymerase II transcription subunit 28

1.3e-09

74.42

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Query:  SQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ
        S +  +  ED++A V ALEAALLPCLPARELQAIDRSPHPSHQ
Subjt:  SQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G52860.1 unknown protein

1.5e-21

62.2

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Query:  DVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV
        DVERHARDFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEEL+ K+++IKK  RL +  +K +KEQ++KH +ELEKV
Subjt:  DVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV

AT3G52860.1 unknown protein

9.0e-11

74.42

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Query:  SQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ
        S +  +  ED++A V ALEAALLPCLPARELQAIDRSPHPSHQ
Subjt:  SQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ

Sequences

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CDS sequence

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ATGGCTGAACGACAACCACTCGACCAACAGCATCAACTTGATCCACAGTCGCAATCCTCGCAGTCTCCAAGAGAAGATATGATTGCATATGTGATGGCCTTGGAAGCTGC
TCTGCTTCCGTGCTTGCCTGCAAGAGAACTACAAGCAATAGACCGTTCTCCTCACCCATCTCATCAAAGTCAGCAGGTGTATTCCCGATGCCTTCTTCAGCTTCTTGATA
ACTATAGTAGCATCATATGGTTTGCTCCTGTTTATAATGGATACTTTAGCGAGTTCTCTATTTGTTGTGCAGACAGACAACTATGGGGGAACTTTGACGTGGAGAGACAT
GCTAGGGATTTTATGGAGGCAGCTAAAAAGCTTCAATTGTACTTCATTGGTTTACAACGTGAGGATCAACCGACCAAAGTGGAAACTCTAAGAAAGGAGATATCTGCCAT
TGAGGAGGAATTAAGATTAAAGAATGACATAATCAAGAAGCAAGAGAGGCTCATTGAAGGGTGGAGAAAGGATTTGAAAGAGCAGTTAGACAAACATAACAATGAGTTAG
AGAAGGTTTAG

mRNA sequence

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Protein sequence

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MAERQPLDQQHQLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQQVYSRCLLQLLDNYSSIIWFAPVYNGYFSEFSICCADRQLWGNFDVERH
ARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV

Spg002512 (gene) of Sponge gourd (cylindrica) v1 genome