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Spg002530 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002530
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLysM domain-containing protein
Genome locationscaffold6:1808249..1808626
RNA-Seq ExpressionSpg002530
SyntenySpg002530
Gene Ontology termsGO:0006468 - protein phosphorylation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0004672 - protein kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576752.1 hypothetical protein SDJN03_24326, partial [Cucurbita argyrosperma subsp. sororia]1.9e-4683.47Show/hide
Query:  SRTRPPSSRPLIDVVSWYSAVGLLGLILIGSIRE-SSSSAADDDGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGL
        SRT PPSSR LIDVVSWY A+ LLGLILIGSIRE SSSSA+ DDGG MLR NLLT R CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGL
Subjt:  SRTRPPSSRPLIDVVSWYSAVGLLGLILIGSIRE-SSSSAADDDGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGL

Query:  VIKIISSYNKPTKFKLGSETG
        VIKIISS+N P   KLG +TG
Subjt:  VIKIISSYNKPTKFKLGSETG

KGN57357.2 hypothetical protein Csa_009741 [Cucumis sativus]1.2e-4078.15Show/hide
Query:  VSISRTRPP--SSRPLIDVVSWYSAVGLLGLILIGSIRESSSSAADDDGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDV
        VS+ R+R P  SSRPLIDVVSWY AVGLLGLILIGSIRE+SSS      G +LR NL+T RPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDV
Subjt:  VSISRTRPP--SSRPLIDVVSWYSAVGLLGLILIGSIRESSSSAADDDGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDV

Query:  FPGLVIKIISS---YNKPT
        FPGLVIKII+S    N PT
Subjt:  FPGLVIKIISS---YNKPT

XP_004150301.1 uncharacterized protein LOC101210054 [Cucumis sativus]1.2e-4078.15Show/hide
Query:  VSISRTRPP--SSRPLIDVVSWYSAVGLLGLILIGSIRESSSSAADDDGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDV
        VS+ R+R P  SSRPLIDVVSWY AVGLLGLILIGSIRE+SSS      G +LR NL+T RPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDV
Subjt:  VSISRTRPP--SSRPLIDVVSWYSAVGLLGLILIGSIRESSSSAADDDGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDV

Query:  FPGLVIKIISS---YNKPT
        FPGLVIKII+S    N PT
Subjt:  FPGLVIKIISS---YNKPT

XP_008439155.1 PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo]1.8e-4182.3Show/hide
Query:  VSISRTRPP----SSRPLIDVVSWYSAVGLLGLILIGSIRESSSSAADDDGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPD
        VSI R+R P    SSRPLIDVVSWY AVGLLGLILIGSIRE+SSS+ D   G  LR NL+T RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPD
Subjt:  VSISRTRPP----SSRPLIDVVSWYSAVGLLGLILIGSIRESSSSAADDDGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPD

Query:  DVFPGLVIKIISS
        DVFPGLVIKII+S
Subjt:  DVFPGLVIKIISS

XP_022985106.1 uncharacterized protein LOC111483184 [Cucurbita maxima]3.8e-4782.5Show/hide
Query:  SRTRPPSSRPLIDVVSWYSAVGLLGLILIGSIRESSSSAADDDGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLV
        SRT PPSSR LIDVVSWY AV +LGLILIGSIRE+SSSA+ DDG  MLR NLLT R CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLV
Subjt:  SRTRPPSSRPLIDVVSWYSAVGLLGLILIGSIRESSSSAADDDGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLV

Query:  IKIISSYNKPTKFKLGSETG
        IKIISS+N P   KLG +TG
Subjt:  IKIISSYNKPTKFKLGSETG

TrEMBL top hitse value%identityAlignment
A0A0A0L5R9 LysM domain-containing protein5.7e-4178.15Show/hide
Query:  VSISRTRPP--SSRPLIDVVSWYSAVGLLGLILIGSIRESSSSAADDDGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDV
        VS+ R+R P  SSRPLIDVVSWY AVGLLGLILIGSIRE+SSS      G +LR NL+T RPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDV
Subjt:  VSISRTRPP--SSRPLIDVVSWYSAVGLLGLILIGSIRESSSSAADDDGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDV

Query:  FPGLVIKIISS---YNKPT
        FPGLVIKII+S    N PT
Subjt:  FPGLVIKIISS---YNKPT

A0A1S3AXP2 uncharacterized protein LOC1034840368.8e-4282.3Show/hide
Query:  VSISRTRPP----SSRPLIDVVSWYSAVGLLGLILIGSIRESSSSAADDDGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPD
        VSI R+R P    SSRPLIDVVSWY AVGLLGLILIGSIRE+SSS+ D   G  LR NL+T RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPD
Subjt:  VSISRTRPP----SSRPLIDVVSWYSAVGLLGLILIGSIRESSSSAADDDGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPD

Query:  DVFPGLVIKIISS
        DVFPGLVIKII+S
Subjt:  DVFPGLVIKIISS

A0A5A7VAP9 Peptidoglycan-binding LysM domain-containing protein8.8e-4282.3Show/hide
Query:  VSISRTRPP----SSRPLIDVVSWYSAVGLLGLILIGSIRESSSSAADDDGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPD
        VSI R+R P    SSRPLIDVVSWY AVGLLGLILIGSIRE+SSS+ D   G  LR NL+T RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPD
Subjt:  VSISRTRPP----SSRPLIDVVSWYSAVGLLGLILIGSIRESSSSAADDDGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPD

Query:  DVFPGLVIKIISS
        DVFPGLVIKII+S
Subjt:  DVFPGLVIKIISS

A0A6J1DRZ3 uncharacterized protein LOC1110238414.8e-4079.44Show/hide
Query:  RTRPPSSRPLIDVVSWYSAVGLLGLILIGSIRESSSSAADDDGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVI
        R+  PSSRP  DVVSWY AVG+L LILIGSIRES+ SA   D G + R NL+  RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVI
Subjt:  RTRPPSSRPLIDVVSWYSAVGLLGLILIGSIRESSSSAADDDGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVI

Query:  KIISSYN
        KIISS N
Subjt:  KIISSYN

A0A6J1J769 uncharacterized protein LOC1114831841.8e-4782.5Show/hide
Query:  SRTRPPSSRPLIDVVSWYSAVGLLGLILIGSIRESSSSAADDDGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLV
        SRT PPSSR LIDVVSWY AV +LGLILIGSIRE+SSSA+ DDG  MLR NLLT R CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLV
Subjt:  SRTRPPSSRPLIDVVSWYSAVGLLGLILIGSIRESSSSAADDDGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLV

Query:  IKIISSYNKPTKFKLGSETG
        IKIISS+N P   KLG +TG
Subjt:  IKIISSYNKPTKFKLGSETG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52790.1 peptidoglycan-binding LysM domain-containing protein1.4e-2049.04Show/hide
Query:  SSRPLIDVVSWYSAVGLLGLILIGSI---RESSSSAADDDGGLMLRANLLTERP-CDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIK
        SS  + + +SWY AV    ++L+ S    +E S+   +     M+       RP CDEIY V EGETL TIS+KCGDP+IVE NPHIHD DD+FPGL+I+
Subjt:  SSRPLIDVVSWYSAVGLLGLILIGSI---RESSSSAADDDGGLMLRANLLTERP-CDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIK

Query:  IISS
        I  S
Subjt:  IISS

AT4G25433.1 peptidoglycan-binding LysM domain-containing protein5.6e-2555.79Show/hide
Query:  DVVSWYSAVGLLGLILIGSIRESSSSAADD----DGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI
        + V+ Y  V LL L L GS++ S+   + +        + R   + ERPC+E+YVVGEG+TLH+IS+KCGDPFIVERNPHIHDPDDVFPGL+IK+
Subjt:  DVVSWYSAVGLLGLILIGSIRESSSSAADD----DGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI

AT5G62150.1 peptidoglycan-binding LysM domain-containing protein3.8e-2962.11Show/hide
Query:  DVVSWYSAVGLLGLILIGSIRESSSSAADDDGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSY
        D+ +W SAV LL LIL+ S+RE+++S +       +R +  + +PC+EIY+VGEGETLHTI DKCGDPFIVERNPHIHDPDDVFPGLV+KI   Y
Subjt:  DVVSWYSAVGLLGLILIGSIRESSSSAADDDGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGTCTCTATTTCCAGAACTAGGCCACCGTCTTCCCGACCCCTAATCGACGTCGTTTCTTGGTACTCCGCCGTGGGTCTCCTGGGCCTGATTCTGATCGGCTCCAT
CCGAGAAAGCTCCTCCTCCGCCGCCGACGACGACGGCGGCCTGATGCTCAGAGCGAACTTGCTGACGGAGCGTCCGTGCGATGAGATTTATGTGGTCGGAGAAGGAGAAA
CGCTTCACACGATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCGGGTTTGGTCATCAAAATTATCTCC
TCTTACAACAAGCCTACGAAATTCAAATTGGGATCGGAAACTGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGTCTCTATTTCCAGAACTAGGCCACCGTCTTCCCGACCCCTAATCGACGTCGTTTCTTGGTACTCCGCCGTGGGTCTCCTGGGCCTGATTCTGATCGGCTCCAT
CCGAGAAAGCTCCTCCTCCGCCGCCGACGACGACGGCGGCCTGATGCTCAGAGCGAACTTGCTGACGGAGCGTCCGTGCGATGAGATTTATGTGGTCGGAGAAGGAGAAA
CGCTTCACACGATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCGGGTTTGGTCATCAAAATTATCTCC
TCTTACAACAAGCCTACGAAATTCAAATTGGGATCGGAAACTGGTTGA
Protein sequenceShow/hide protein sequence
MAVSISRTRPPSSRPLIDVVSWYSAVGLLGLILIGSIRESSSSAADDDGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIS
SYNKPTKFKLGSETG