CuGenDBv2

Gene ID	Spg002558
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Tubulin alpha chain
Genome location	scaffold6:4025539..4031232
RNA-Seq Expression	Spg002558
Synteny	Spg002558
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6576903.1 hypothetical protein SDJN03_24477, partial [Cucurbita argyrosperma subsp. sororia]

2.3e-64

91.55

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Query:  MKELKKRGITPTSLLEDTNSTDFGLGGEMTGENIDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFAL
        MKELKKRGITPTSLLEDT++TDFGLGGEM GEN DFS RSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFAL
Subjt:  MKELKKRGITPTSLLEDTNSTDFGLGGEMTGENIDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFAL

Query:  YFFLGPSFVHDASKTPLSPPPYVDPYALLGDERISQIAPRVN
        YFFLGPSFVHD +KTP+SPPPYVDPYALL DERISQ+APRVN
Subjt:  YFFLGPSFVHDASKTPLSPPPYVDPYALLGDERISQIAPRVN

KAG7014928.1 hypothetical protein SDJN02_22559, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.3e-64

91.55

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Query:  MKELKKRGITPTSLLEDTNSTDFGLGGEMTGENIDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFAL
        MKELKKRGITPTSLLEDT++TDFGLGGEM GEN DFS RSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFAL
Subjt:  MKELKKRGITPTSLLEDTNSTDFGLGGEMTGENIDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFAL

Query:  YFFLGPSFVHDASKTPLSPPPYVDPYALLGDERISQIAPRVN
        YFFLGPSFVHD +KTP+SPPPYVDPYALL DERISQ+APRVN
Subjt:  YFFLGPSFVHDASKTPLSPPPYVDPYALLGDERISQIAPRVN

XP_022922737.1 uncharacterized protein LOC111430640 [Cucurbita moschata]

5.0e-64

90.85

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Query:  MKELKKRGITPTSLLEDTNSTDFGLGGEMTGENIDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFAL
        MKELKKRGITPTSLLEDT++TDFGLGGEM GEN DFS RSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFAL
Subjt:  MKELKKRGITPTSLLEDTNSTDFGLGGEMTGENIDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFAL

Query:  YFFLGPSFVHDASKTPLSPPPYVDPYALLGDERISQIAPRVN
        YFFLGPSFVHD +KTP+SPPPYVDPYALL DER+SQ+APRVN
Subjt:  YFFLGPSFVHDASKTPLSPPPYVDPYALLGDERISQIAPRVN

XP_022984914.1 uncharacterized protein LOC111483048 [Cucurbita maxima]

2.3e-64

91.55

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Query:  MKELKKRGITPTSLLEDTNSTDFGLGGEMTGENIDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFAL
        MKELKKRGITPTSLLEDT++TDFGLGGEM GEN DFS RSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFAL
Subjt:  MKELKKRGITPTSLLEDTNSTDFGLGGEMTGENIDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFAL

Query:  YFFLGPSFVHDASKTPLSPPPYVDPYALLGDERISQIAPRVN
        YFFLGPSFVHD +KTP+SPPPYVDPYALL DERISQ+APRVN
Subjt:  YFFLGPSFVHDASKTPLSPPPYVDPYALLGDERISQIAPRVN

XP_023552655.1 uncharacterized protein LOC111810239 [Cucurbita pepo subsp. pepo]

2.3e-64

91.55

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Query:  MKELKKRGITPTSLLEDTNSTDFGLGGEMTGENIDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFAL
        MKELKKRGITPTSLLEDT++TDFGLGGEM GEN DFS RSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFAL
Subjt:  MKELKKRGITPTSLLEDTNSTDFGLGGEMTGENIDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFAL

Query:  YFFLGPSFVHDASKTPLSPPPYVDPYALLGDERISQIAPRVN
        YFFLGPSFVHD +KTP+SPPPYVDPYALL DERISQ+APRVN
Subjt:  YFFLGPSFVHDASKTPLSPPPYVDPYALLGDERISQIAPRVN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BY38 uncharacterized protein LOC103494832

5.1e-62

90.14

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Query:  MKELKKRGITPTSLLEDTNSTDFGLGGEMTGENIDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFAL
        MKELKKRGITPTSLLEDTN++DFGLGGEMTGEN DFS RSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI+ITVSFFF L
Subjt:  MKELKKRGITPTSLLEDTNSTDFGLGGEMTGENIDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFAL

Query:  YFFLGPSFVHDASKTPLSPPPYVDPYALLGDERISQIAPRVN
        YFF G SF+HD  KTP+SPPPYVDPYALL DERISQIAP VN
Subjt:  YFFLGPSFVHDASKTPLSPPPYVDPYALLGDERISQIAPRVN

A0A6J1D5D9 uncharacterized protein LOC111017763

3.0e-62

90.85

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Query:  MKELKKRGITPTSLLEDTNSTDFGLGGEMTGENIDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFAL
        MKELKKRG+TPTSLLED+NS DFGLGGEMTGE  DFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFAL
Subjt:  MKELKKRGITPTSLLEDTNSTDFGLGGEMTGENIDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFAL

Query:  YFFLGPSFVHDASKTPLSPPPYVDPYALLGDERISQIAPRVN
        YFF GPSFVH+  +TP+SPPPYVDPYALL DERISQ APRVN
Subjt:  YFFLGPSFVHDASKTPLSPPPYVDPYALLGDERISQIAPRVN

A0A6J1E457 uncharacterized protein LOC111430640

2.4e-64

90.85

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Query:  MKELKKRGITPTSLLEDTNSTDFGLGGEMTGENIDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFAL
        MKELKKRGITPTSLLEDT++TDFGLGGEM GEN DFS RSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFAL
Subjt:  MKELKKRGITPTSLLEDTNSTDFGLGGEMTGENIDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFAL

Query:  YFFLGPSFVHDASKTPLSPPPYVDPYALLGDERISQIAPRVN
        YFFLGPSFVHD +KTP+SPPPYVDPYALL DER+SQ+APRVN
Subjt:  YFFLGPSFVHDASKTPLSPPPYVDPYALLGDERISQIAPRVN

A0A6J1JBV1 uncharacterized protein LOC111483048

1.1e-64

91.55

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Query:  MKELKKRGITPTSLLEDTNSTDFGLGGEMTGENIDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFAL
        MKELKKRGITPTSLLEDT++TDFGLGGEM GEN DFS RSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFAL
Subjt:  MKELKKRGITPTSLLEDTNSTDFGLGGEMTGENIDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFAL

Query:  YFFLGPSFVHDASKTPLSPPPYVDPYALLGDERISQIAPRVN
        YFFLGPSFVHD +KTP+SPPPYVDPYALL DERISQ+APRVN
Subjt:  YFFLGPSFVHDASKTPLSPPPYVDPYALLGDERISQIAPRVN

E5GBH6 Tubulin alpha chain

5.1e-62

90.14

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Query:  MKELKKRGITPTSLLEDTNSTDFGLGGEMTGENIDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFAL
        MKELKKRGITPTSLLEDTN++DFGLGGEMTGEN DFS RSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI+ITVSFFF L
Subjt:  MKELKKRGITPTSLLEDTNSTDFGLGGEMTGENIDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFAL

Query:  YFFLGPSFVHDASKTPLSPPPYVDPYALLGDERISQIAPRVN
        YFF G SF+HD  KTP+SPPPYVDPYALL DERISQIAP VN
Subjt:  YFFLGPSFVHDASKTPLSPPPYVDPYALLGDERISQIAPRVN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G50020.1 unknown protein

5.8e-42

62.94

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Query:  MKELKKRGITPTSLLEDTN-STDFGLGGEMTGENIDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFA
        MKELK+RG+TPTSLL+D     D    G+ TG +   S  +A +   +KSL NQRERS+ LNSEGLEGLIPRA++LLTIGGTFFLGFWPLIV+T+  F A
Subjt:  MKELKKRGITPTSLLEDTN-STDFGLGGEMTGENIDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFA

Query:  LYFFLGPSFVHDASKTPLSPPPYVDPYALLGDERISQIAPRVN
        LY + G  F+HD S+TP+SPPPY+DPYALL DERIS + PR+N
Subjt:  LYFFLGPSFVHDASKTPLSPPPYVDPYALLGDERISQIAPRVN

Sequences

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CDS sequence

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ATGAAAGAACTGAAGAAGAGAGGTATAACTCCCACTTCCTTGCTTGAGGATACTAACAGCACTGACTTTGGACTTGGTGGCGAGATGACGGGAGAAAACATAGATTTCTC
CAGTAGAAGTGCTGTTTCAACTGAAGTTAACAAGAGCCTATCCAATCAAAGGGAGCGTTCCATGCAATTGAACAGTGAAGGACTTGAGGGGTTGATCCCTCGCGCTAAAC
TTTTGCTAACAATTGGAGGAACATTCTTCTTAGGATTCTGGCCGTTGATCGTCATCACTGTTTCGTTCTTTTTCGCTTTATACTTTTTTCTTGGACCATCTTTTGTTCAC
GATGCCAGCAAAACGCCATTATCTCCTCCACCGTATGTGGATCCATATGCTCTTTTAGGAGACGAGAGAATTTCGCAAATAGCTCCTCGTGTAAACTGA

mRNA sequence

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Protein sequence

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MKELKKRGITPTSLLEDTNSTDFGLGGEMTGENIDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFLGPSFVH
DASKTPLSPPPYVDPYALLGDERISQIAPRVN

Spg002558 (gene) of Sponge gourd (cylindrica) v1 genome