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Spg002582 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002582
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H-like superfamily protein
Genome locationscaffold6:3127633..3129018
RNA-Seq ExpressionSpg002582
SyntenySpg002582
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054466.1 putative non-LTR retroelement reverse transcriptase [Cucumis melo var. makuwa]8.8e-0737.23Show/hide
Query:  RLSKSPNSLLAKTLRGRYFKGGDFLNAQLGSNP----------SLTRRSIVWEANLKGHFISTLLDNRGKWKEDVVAENFSPTDAMAILEMEWK
        RL  S N+LL + LRG YF  G FLN   G NP           ++ R    E  LKG  +S+L++   KW ED++   F  +DA +IL M ++
Subjt:  RLSKSPNSLLAKTLRGRYFKGGDFLNAQLGSNP----------SLTRRSIVWEANLKGHFISTLLDNRGKWKEDVVAENFSPTDAMAILEMEWK

XP_022145149.1 uncharacterized protein LOC111014663 [Momordica charantia]8.8e-0731.93Show/hide
Query:  RLSKSPNSLLAKTLRGRYFKGGDFLNAQLGSNPSLTRRSIVWEANL--KG------------------------------------HFISTLLDNRGKWK
        R+ + P S L KTLRG+YF+ G FL A+LG++PS   RSI+WE  L  KG                                    H ++ L+  RG+W 
Subjt:  RLSKSPNSLLAKTLRGRYFKGGDFLNAQLGSNPSLTRRSIVWEANL--KG------------------------------------HFISTLLDNRGKWK

Query:  EDVVAENFSPTDAMAILEM
        E  + +NF  ++A  IL++
Subjt:  EDVVAENFSPTDAMAILEM

XP_022155286.1 uncharacterized protein LOC111022423 [Momordica charantia]8.8e-0733.9Show/hide
Query:  RLSKSPNSLLAKTLRGRYFKGGDFLNAQLGSNPSLTRRSIVWEANL-------------------------KGHF-------------ISTLLDNRGKWK
        R+ + P+SLLAKTLRG+YFK G FL A+LG+ PS   RSI+W  +L                          G+F             ++ L++ RG+W 
Subjt:  RLSKSPNSLLAKTLRGRYFKGGDFLNAQLGSNPSLTRRSIVWEANL-------------------------KGHF-------------ISTLLDNRGKWK

Query:  EDVVAENFSPTDAMAILE
        E  V E+F  ++A  IL+
Subjt:  EDVVAENFSPTDAMAILE

XP_024044510.1 uncharacterized protein LOC112100177 [Citrus clementina]1.5e-0634.83Show/hide
Query:  RLSKSPNSLLAKTLRGRYFKGGDFLNAQLGSNPSLTRRSIVWEANLKGH--------FISTLLDNRGKWKEDVVAENFSPTDAMAILEM
        R+   P+SL+AK L+ +YFKG  F+ A+LGSNPS   RSI+W  +L            ++ L+ +  +W  + +A++FS   +  IL +
Subjt:  RLSKSPNSLLAKTLRGRYFKGGDFLNAQLGSNPSLTRRSIVWEANLKGH--------FISTLLDNRGKWKEDVVAENFSPTDAMAILEM

XP_030509188.1 uncharacterized protein LOC115723863 [Cannabis sativa]1.1e-0644.44Show/hide
Query:  RLSKSPNSLLAKTLRGRYFKGGDFLNAQLGSNPSLTRRSIVWEANLKGHFISTLLDNRGKWKEDVVAENFSPTDAMAILEM
        RL + PNSLL+K LR RYF  G FL++ LGSNPSLT RS+  + NL    ++ L+  + +W    +  NFS  D   IL +
Subjt:  RLSKSPNSLLAKTLRGRYFKGGDFLNAQLGSNPSLTRRSIVWEANLKGHFISTLLDNRGKWKEDVVAENFSPTDAMAILEM

TrEMBL top hitse value%identityAlignment
A0A1S8ACU2 Ribonuclease H-like superfamily protein9.5e-0731.67Show/hide
Query:  RLSKSPNSLLAKTLRGRYFKGGDFLNAQLGSNPSLTRRSIVWEANL------------------KGHFI--------------------STLLDNRGKWK
        R+ K P SL+AK L+ +YFKG DFL A+LGS PS   RSI+W   +                  K H+I                    + L+D   KWK
Subjt:  RLSKSPNSLLAKTLRGRYFKGGDFLNAQLGSNPSLTRRSIVWEANL------------------KGHFI--------------------STLLDNRGKWK

Query:  EDVVAENFSPTDAMAILEME
        E ++ ++F+  DA  I  ++
Subjt:  EDVVAENFSPTDAMAILEME

A0A5D3CRR9 Putative non-LTR retroelement reverse transcriptase4.3e-0737.23Show/hide
Query:  RLSKSPNSLLAKTLRGRYFKGGDFLNAQLGSNP----------SLTRRSIVWEANLKGHFISTLLDNRGKWKEDVVAENFSPTDAMAILEMEWK
        RL  S N+LL + LRG YF  G FLN   G NP           ++ R    E  LKG  +S+L++   KW ED++   F  +DA +IL M ++
Subjt:  RLSKSPNSLLAKTLRGRYFKGGDFLNAQLGSNP----------SLTRRSIVWEANLKGHFISTLLDNRGKWKEDVVAENFSPTDAMAILEMEWK

A0A6J1CUD6 uncharacterized protein LOC1110146634.3e-0731.93Show/hide
Query:  RLSKSPNSLLAKTLRGRYFKGGDFLNAQLGSNPSLTRRSIVWEANL--KG------------------------------------HFISTLLDNRGKWK
        R+ + P S L KTLRG+YF+ G FL A+LG++PS   RSI+WE  L  KG                                    H ++ L+  RG+W 
Subjt:  RLSKSPNSLLAKTLRGRYFKGGDFLNAQLGSNPSLTRRSIVWEANL--KG------------------------------------HFISTLLDNRGKWK

Query:  EDVVAENFSPTDAMAILEM
        E  + +NF  ++A  IL++
Subjt:  EDVVAENFSPTDAMAILEM

A0A6J1CV63 uncharacterized protein LOC1110146628.0e-0656.52Show/hide
Query:  RLSKSPNSLLAKTLRGRYFKGGDFLNAQLGSNPSLTRRSIVWEANL
        ++ K+PNSLL + LRG+YFK G+F+ A+LGSNPS   RSI+W   L
Subjt:  RLSKSPNSLLAKTLRGRYFKGGDFLNAQLGSNPSLTRRSIVWEANL

A0A6J1DRA0 uncharacterized protein LOC1110224234.3e-0733.9Show/hide
Query:  RLSKSPNSLLAKTLRGRYFKGGDFLNAQLGSNPSLTRRSIVWEANL-------------------------KGHF-------------ISTLLDNRGKWK
        R+ + P+SLLAKTLRG+YFK G FL A+LG+ PS   RSI+W  +L                          G+F             ++ L++ RG+W 
Subjt:  RLSKSPNSLLAKTLRGRYFKGGDFLNAQLGSNPSLTRRSIVWEANL-------------------------KGHF-------------ISTLLDNRGKWK

Query:  EDVVAENFSPTDAMAILE
        E  V E+F  ++A  IL+
Subjt:  EDVVAENFSPTDAMAILE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein7.4e-0450Show/hide
Query:  RLSKSPNSLLAKTLRGRYFKGGDFLNAQLGSNPSLTRRSI
        R+   P SL+AK  + RYF   D LNA LGS PS   +SI
Subjt:  RLSKSPNSLLAKTLRGRYFKGGDFLNAQLGSNPSLTRRSI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTATCAAACGGGGCCTTAATAAATTTGATGGAACATATATATACTTTTTAATACCGAGGCTCTCAAAATCCCCAAACTCCCTTCTAGCCAAAACGCTTCGAGGCAG
ATACTTCAAGGGAGGGGACTTCTTAAATGCCCAGTTGGGATCCAACCCTTCTTTGACTCGGAGAAGTATAGTGTGGGAGGCGAACCTAAAAGGACACTTTATCTCGACTC
TGTTGGATAATAGAGGGAAGTGGAAAGAGGATGTGGTTGCTGAAAATTTTTCCCCCACTGATGCTATGGCAATCCTAGAGATGGAATGGAAGTGGGCGGAGTGGGCAAGC
CGGATGAGATCATTTCAGAATAGCTCTAAAGCCTCATCCTCTTCTGCAAGCGAGCCTGACCCTCTCTGGAGGGCAAATTGGAGTACTGCTGACTACTGGATTTGGTGCTC
AAAGAATTTGGAAGAGGAAGATCTTGAAAAGGCGATTAAGGAAGAGCCTGCCGAGTCAAGCAAGATGGTCTCCCCCTCCCCAAAATTGGTGGAAGCTGAATGTCGACGCC
TCGTGGTGCGAGTCCCGGAAGACAATCCGAGCTTCAAGATCAAATTTGTCTATCCCCCCCCCCCCCCCATCGTGGTTGATTCGGATGCCCTCGGCGTGGTGAAGCTGTTG
AATGGCGAAGAAGAAGAAGACCGATCAGAGATCTCCTTTCTGGTCGACGAAATCTCTCAGGCGAAGCAACTCTCGGAAGAAAGAGAAACTGGAGTCATGTTCTGGCGCGA
ATCGCGTCTAGCGGTTTTGGCGGGTCGGGTTTGTCCCTTTCGATTTGAGGTTCGTGGGTTTTGGGTCGGGTCTTACCCGCGTGCTTGGCCTCCCTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTATCAAACGGGGCCTTAATAAATTTGATGGAACATATATATACTTTTTAATACCGAGGCTCTCAAAATCCCCAAACTCCCTTCTAGCCAAAACGCTTCGAGGCAG
ATACTTCAAGGGAGGGGACTTCTTAAATGCCCAGTTGGGATCCAACCCTTCTTTGACTCGGAGAAGTATAGTGTGGGAGGCGAACCTAAAAGGACACTTTATCTCGACTC
TGTTGGATAATAGAGGGAAGTGGAAAGAGGATGTGGTTGCTGAAAATTTTTCCCCCACTGATGCTATGGCAATCCTAGAGATGGAATGGAAGTGGGCGGAGTGGGCAAGC
CGGATGAGATCATTTCAGAATAGCTCTAAAGCCTCATCCTCTTCTGCAAGCGAGCCTGACCCTCTCTGGAGGGCAAATTGGAGTACTGCTGACTACTGGATTTGGTGCTC
AAAGAATTTGGAAGAGGAAGATCTTGAAAAGGCGATTAAGGAAGAGCCTGCCGAGTCAAGCAAGATGGTCTCCCCCTCCCCAAAATTGGTGGAAGCTGAATGTCGACGCC
TCGTGGTGCGAGTCCCGGAAGACAATCCGAGCTTCAAGATCAAATTTGTCTATCCCCCCCCCCCCCCCATCGTGGTTGATTCGGATGCCCTCGGCGTGGTGAAGCTGTTG
AATGGCGAAGAAGAAGAAGACCGATCAGAGATCTCCTTTCTGGTCGACGAAATCTCTCAGGCGAAGCAACTCTCGGAAGAAAGAGAAACTGGAGTCATGTTCTGGCGCGA
ATCGCGTCTAGCGGTTTTGGCGGGTCGGGTTTGTCCCTTTCGATTTGAGGTTCGTGGGTTTTGGGTCGGGTCTTACCCGCGTGCTTGGCCTCCCTTTTGA
Protein sequenceShow/hide protein sequence
MVIKRGLNKFDGTYIYFLIPRLSKSPNSLLAKTLRGRYFKGGDFLNAQLGSNPSLTRRSIVWEANLKGHFISTLLDNRGKWKEDVVAENFSPTDAMAILEMEWKWAEWAS
RMRSFQNSSKASSSSASEPDPLWRANWSTADYWIWCSKNLEEEDLEKAIKEEPAESSKMVSPSPKLVEAECRRLVVRVPEDNPSFKIKFVYPPPPPIVVDSDALGVVKLL
NGEEEEDRSEISFLVDEISQAKQLSEERETGVMFWRESRLAVLAGRVCPFRFEVRGFWVGSYPRAWPPF