CuGenDBv2

Gene ID	Spg002584
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNA polymerase sigma factor sigE
Genome location	scaffold6:871137..875081
RNA-Seq Expression	Spg002584
Synteny	Spg002584
Gene Ontology terms	GO:0071482 - cellular response to light stimulus (biological process) GO:2000142 - regulation of DNA-templated transcription, initiation (biological process) GO:0003677 - DNA binding (molecular function) GO:0016987 - sigma factor activity (molecular function)
InterPro domains	IPR000943 - RNA polymerase sigma-70 IPR007624 - RNA polymerase sigma-70 region 3 IPR007627 - RNA polymerase sigma-70 region 2 IPR007630 - RNA polymerase sigma-70 region 4 IPR013324 - RNA polymerase sigma factor, region 3/4-like IPR013325 - RNA polymerase sigma factor, region 2 IPR014284 - RNA polymerase sigma-70 like domain IPR036388 - Winged helix-like DNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6576670.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]

3.6e-223

83.3

Show/hide

Query:  MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNKRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYNEAAAK
        MGVVTVSSSAARTP RLG KFSN+ S LKRPSIVAFK DKHTNTTLVSPHEQVTLPVESN RNQKR+GK+SKSLKRVKAV IDEATPCT DVDYNEAAAK
Subjt:  MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNKRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYNEAAAK

Query:  LENIFKLSPVTEDTDMESKDGRPKRGQQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEGKAAPSLRKQKDTKSEADEIDDLVRDYSASTDLVS
        LENIFKLSPVTEDTDME++DGRPKRGQQRRKK  KRP DG+VRNQTKRIKRLDLD+RIALKS+KEGK+APSL KQKDTKSEADEIDDLVR+YSASTDLVS
Subjt:  LENIFKLSPVTEDTDMESKDGRPKRGQQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEGKAAPSLRKQKDTKSEADEIDDLVRDYSASTDLVS

Query:  LDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF
        LDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQ QE+LQK LGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF
Subjt:  LDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF

Query:  QDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV-------------------------------------------
        QDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV                                           
Subjt:  QDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV-------------------------------------------

Query:  -------------EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR
                     EEFI+GI D+EGTGGDNRRQ ALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR
Subjt:  -------------EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR

Query:  VDYLRRYLI
        VDYLRRYLI
Subjt:  VDYLRRYLI

XP_022140941.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Momordica charantia]

1.7e-225

83.5

Show/hide

Query:  MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNKRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYNEAAAK
        MGVVTVSSSAARTPLRLGAKFSNHNSTLKRP+IVAFKADKHTNTTLVSPHEQVTLPVESN R +KRSGKTSKSLKRVKAVF DEA+PCT +VDYNEAAAK
Subjt:  MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNKRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYNEAAAK

Query:  LENIFKLSPVTEDTDMESKDGRPKRGQQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEGKAAPSLRKQKDTKSEADEIDDLVRDYSASTDLVS
        LENIF LSP+T+DTD+ESKDGR + GQQRRKKSDKR  DGI+RNQTKRIKRLDLD+RIALK++KE KAAPSL+KQK+TK+EADEIDDLVRDYSASTDLVS
Subjt:  LENIFKLSPVTEDTDMESKDGRPKRGQQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEGKAAPSLRKQKDTKSEADEIDDLVRDYSASTDLVS

Query:  LDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF
        LDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNV+QVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF
Subjt:  LDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF

Query:  QDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV-------------------------------------------
        QDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV                                           
Subjt:  QDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV-------------------------------------------

Query:  -------------EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR
                     EEFINGITD+EG GGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR
Subjt:  -------------EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR

Query:  VDYLRRYLI
        VDYLRRYLI
Subjt:  VDYLRRYLI

XP_022922775.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X1 [Cucurbita moschata]

6.5e-225

83.24

Show/hide

Query:  LLLGMGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNKRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYNE
        +LLGMGVVTVSSSAARTP RLG KFSN+ S LKRPSIVAFK DKHTNTTLVSPHEQVTLPVESN RNQKR+GK+SKSLKRVKAV IDEATPCT DVDYNE
Subjt:  LLLGMGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNKRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYNE

Query:  AAAKLENIFKLSPVTEDTDMESKDGRPKRGQQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEGKAAPSLRKQKDTKSEADEIDDLVRDYSAST
        AAAKLENIFKLSPVTEDTDME++DGRPKRGQQRRKK  KRP DG+VRNQTKRIKRLDLD+RIALKS+KEGK+APSL KQKDTKSEADEIDDLVR+YSAST
Subjt:  AAAKLENIFKLSPVTEDTDMESKDGRPKRGQQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEGKAAPSLRKQKDTKSEADEIDDLVRDYSAST

Query:  DLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFAS
        DLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQ QE+LQK LGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFAS
Subjt:  DLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFAS

Query:  GPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV---------------------------------------
        GPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV                                       
Subjt:  GPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV---------------------------------------

Query:  -----------------EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLK
                         EEFI+GI D+EGTGGDNRRQ ALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLK
Subjt:  -----------------EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLK

Query:  HPARVDYLRRYLI
        HPARVDYLRRYLI
Subjt:  HPARVDYLRRYLI

XP_022922776.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X2 [Cucurbita moschata]

3.6e-223

83.3

Show/hide

Query:  MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNKRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYNEAAAK
        MGVVTVSSSAARTP RLG KFSN+ S LKRPSIVAFK DKHTNTTLVSPHEQVTLPVESN RNQKR+GK+SKSLKRVKAV IDEATPCT DVDYNEAAAK
Subjt:  MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNKRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYNEAAAK

Query:  LENIFKLSPVTEDTDMESKDGRPKRGQQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEGKAAPSLRKQKDTKSEADEIDDLVRDYSASTDLVS
        LENIFKLSPVTEDTDME++DGRPKRGQQRRKK  KRP DG+VRNQTKRIKRLDLD+RIALKS+KEGK+APSL KQKDTKSEADEIDDLVR+YSASTDLVS
Subjt:  LENIFKLSPVTEDTDMESKDGRPKRGQQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEGKAAPSLRKQKDTKSEADEIDDLVRDYSASTDLVS

Query:  LDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF
        LDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQ QE+LQK LGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF
Subjt:  LDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF

Query:  QDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV-------------------------------------------
        QDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV                                           
Subjt:  QDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV-------------------------------------------

Query:  -------------EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR
                     EEFI+GI D+EGTGGDNRRQ ALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR
Subjt:  -------------EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR

Query:  VDYLRRYLI
        VDYLRRYLI
Subjt:  VDYLRRYLI

XP_038903010.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Benincasa hispida]

4.8e-228

84.87

Show/hide

Query:  MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNKRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYNEAAAK
        MGVVTVSSSAAR+P RLGAKF+NHNSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN  N+KRSGKTSK LKRVKAV IDEATPCTLDVDYNEAAAK
Subjt:  MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNKRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYNEAAAK

Query:  LENIFKLSPVTEDTDMESKDGRPKRGQQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEGKAAPSLRKQKDTKSEADEIDDLVRDYSASTDLVS
        LENIFKLSPVTEDTDMESKDGR KRGQQRRKKSDKR SDGIVRNQTKRIKRLDLD+RIAL+S+KEGKAAPSLRKQKDTK+E DEID LVRDYSASTDLVS
Subjt:  LENIFKLSPVTEDTDMESKDGRPKRGQQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEGKAAPSLRKQKDTKSEADEIDDLVRDYSASTDLVS

Query:  LDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF
        LDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQE+LQKELGREPTEGELAN TNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF
Subjt:  LDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF

Query:  QDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV-------------------------------------------
        QDLCQAGVKGLITAIDRFEPKR+FRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV                                           
Subjt:  QDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV-------------------------------------------

Query:  -------------EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR
                     EEFINGITD+EGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR
Subjt:  -------------EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR

Query:  VDYLRRYLI
        VDYLRRYL+
Subjt:  VDYLRRYLI

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CHI4 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial

8.3e-226

83.5

Show/hide

Query:  MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNKRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYNEAAAK
        MGVVTVSSSAARTPLRLGAKFSNHNSTLKRP+IVAFKADKHTNTTLVSPHEQVTLPVESN R +KRSGKTSKSLKRVKAVF DEA+PCT +VDYNEAAAK
Subjt:  MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNKRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYNEAAAK

Query:  LENIFKLSPVTEDTDMESKDGRPKRGQQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEGKAAPSLRKQKDTKSEADEIDDLVRDYSASTDLVS
        LENIF LSP+T+DTD+ESKDGR + GQQRRKKSDKR  DGI+RNQTKRIKRLDLD+RIALK++KE KAAPSL+KQK+TK+EADEIDDLVRDYSASTDLVS
Subjt:  LENIFKLSPVTEDTDMESKDGRPKRGQQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEGKAAPSLRKQKDTKSEADEIDDLVRDYSASTDLVS

Query:  LDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF
        LDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNV+QVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF
Subjt:  LDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF

Query:  QDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV-------------------------------------------
        QDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV                                           
Subjt:  QDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV-------------------------------------------

Query:  -------------EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR
                     EEFINGITD+EG GGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR
Subjt:  -------------EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR

Query:  VDYLRRYLI
        VDYLRRYLI
Subjt:  VDYLRRYLI

A0A6J1E518 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X2

1.7e-223

83.3

Show/hide

Query:  MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNKRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYNEAAAK
        MGVVTVSSSAARTP RLG KFSN+ S LKRPSIVAFK DKHTNTTLVSPHEQVTLPVESN RNQKR+GK+SKSLKRVKAV IDEATPCT DVDYNEAAAK
Subjt:  MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNKRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYNEAAAK

Query:  LENIFKLSPVTEDTDMESKDGRPKRGQQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEGKAAPSLRKQKDTKSEADEIDDLVRDYSASTDLVS
        LENIFKLSPVTEDTDME++DGRPKRGQQRRKK  KRP DG+VRNQTKRIKRLDLD+RIALKS+KEGK+APSL KQKDTKSEADEIDDLVR+YSASTDLVS
Subjt:  LENIFKLSPVTEDTDMESKDGRPKRGQQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEGKAAPSLRKQKDTKSEADEIDDLVRDYSASTDLVS

Query:  LDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF
        LDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQ QE+LQK LGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF
Subjt:  LDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF

Query:  QDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV-------------------------------------------
        QDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV                                           
Subjt:  QDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV-------------------------------------------

Query:  -------------EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR
                     EEFI+GI D+EGTGGDNRRQ ALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR
Subjt:  -------------EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR

Query:  VDYLRRYLI
        VDYLRRYLI
Subjt:  VDYLRRYLI

A0A6J1E9R5 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X1

3.2e-225

83.24

Show/hide

Query:  LLLGMGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNKRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYNE
        +LLGMGVVTVSSSAARTP RLG KFSN+ S LKRPSIVAFK DKHTNTTLVSPHEQVTLPVESN RNQKR+GK+SKSLKRVKAV IDEATPCT DVDYNE
Subjt:  LLLGMGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNKRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYNE

Query:  AAAKLENIFKLSPVTEDTDMESKDGRPKRGQQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEGKAAPSLRKQKDTKSEADEIDDLVRDYSAST
        AAAKLENIFKLSPVTEDTDME++DGRPKRGQQRRKK  KRP DG+VRNQTKRIKRLDLD+RIALKS+KEGK+APSL KQKDTKSEADEIDDLVR+YSAST
Subjt:  AAAKLENIFKLSPVTEDTDMESKDGRPKRGQQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEGKAAPSLRKQKDTKSEADEIDDLVRDYSAST

Query:  DLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFAS
        DLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQ QE+LQK LGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFAS
Subjt:  DLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFAS

Query:  GPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV---------------------------------------
        GPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV                                       
Subjt:  GPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV---------------------------------------

Query:  -----------------EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLK
                         EEFI+GI D+EGTGGDNRRQ ALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLK
Subjt:  -----------------EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLK

Query:  HPARVDYLRRYLI
        HPARVDYLRRYLI
Subjt:  HPARVDYLRRYLI

A0A6J1J8N6 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X2

4.7e-221

82.91

Show/hide

Query:  MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNKRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYNEAAAK
        MGVVTVSSSAARTP RLG KFSN+ S  KRPSIVAFK DKHTN TLVSPHEQVTLPVESN RNQKR+GKTSKSLKRVKAV IDEATPCT DVDYNEAAAK
Subjt:  MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNKRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYNEAAAK

Query:  LENIFKLSPVTEDTDMESKDGRPKRGQQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEGKAAPSLRKQKDTKSEADEIDDLVRDYSASTDLVS
        LENIFKLSPVTEDTDME++DGRPKR QQRRKK  KRP DG+VRNQTKRIKRLDLDRRIALKS+KEGK+APSL  QKDTKSEADEIDDLVR+YSASTDLVS
Subjt:  LENIFKLSPVTEDTDMESKDGRPKRGQQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEGKAAPSLRKQKDTKSEADEIDDLVRDYSASTDLVS

Query:  LDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF
        LDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQ QE+LQK LGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF
Subjt:  LDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF

Query:  QDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV-------------------------------------------
        QDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV                                           
Subjt:  QDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV-------------------------------------------

Query:  -------------EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR
                     EEFI+GI D+EGTGGDNRRQ ALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR
Subjt:  -------------EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR

Query:  VDYLRRYLI
        VDYLRRYLI
Subjt:  VDYLRRYLI

A0A6J1JAI7 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X1

8.6e-223

82.85

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Query:  LLLGMGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNKRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYNE
        +LLGMGVVTVSSSAARTP RLG KFSN+ S  KRPSIVAFK DKHTN TLVSPHEQVTLPVESN RNQKR+GKTSKSLKRVKAV IDEATPCT DVDYNE
Subjt:  LLLGMGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNKRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYNE

Query:  AAAKLENIFKLSPVTEDTDMESKDGRPKRGQQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEGKAAPSLRKQKDTKSEADEIDDLVRDYSAST
        AAAKLENIFKLSPVTEDTDME++DGRPKR QQRRKK  KRP DG+VRNQTKRIKRLDLDRRIALKS+KEGK+APSL  QKDTKSEADEIDDLVR+YSAST
Subjt:  AAAKLENIFKLSPVTEDTDMESKDGRPKRGQQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEGKAAPSLRKQKDTKSEADEIDDLVRDYSAST

Query:  DLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFAS
        DLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQ QE+LQK LGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFAS
Subjt:  DLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFAS

Query:  GPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV---------------------------------------
        GPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV                                       
Subjt:  GPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV---------------------------------------

Query:  -----------------EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLK
                         EEFI+GI D+EGTGGDNRRQ ALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLK
Subjt:  -----------------EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLK

Query:  HPARVDYLRRYLI
        HPARVDYLRRYLI
Subjt:  HPARVDYLRRYLI

SwissProt top hits

e value

%identity

Alignment

P26683 RNA polymerase sigma factor SigA

2.8e-29

29.68

Show/hide

Query:  SKEGKAAPSLRKQKDTKSEADEIDDLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVR
        +K GKAA S R+ +  K    E  D +R Y      + L          L + E   L + +  +  L +V+E L ++L R+P + E A A  + +   R
Subjt:  SKEGKAAPSLRKQKDTKSEADEIDDLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVR

Query:  RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSM---------------TLSSF
         +L +GR A++K+++ NLRLV+ +  KY      G  FQDL Q G  GLI A ++F+ ++ ++ STYA +WIR AI R++               T+S  
Subjt:  RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSM---------------TLSSF

Query:  ---------------------TRVSFGLDSV---------------------EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYG
                             TR+   ++ +                     +  +    + +G   +++    LLR  L+ VLDSL P+E  V+R RYG
Subjt:  ---------------------TRVSFGLDSV---------------------EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYG

Query:  LDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYL
        LD    +TL EI    N++RE +R+ E KAL KL+HP R   L+ Y+
Subjt:  LDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYL

P38023 RNA polymerase sigma factor SigA1

2.1e-24

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Query:  VTEDTDMESKDGRPKRGQQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEGKAAPSLRKQKDTKSEADEIDDLVRDYSASTDLVSLDWKKMKIP
        +T+ T++     +P   + +R  S K+ +  +V   T      D+D      S  E + A +  K K  K+     +D +R Y      + L        
Subjt:  VTEDTDMESKDGRPKRGQQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEGKAAPSLRKQKDTKSEADEIDDLVRDYSASTDLVSLDWKKMKIP

Query:  PVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVK
          L + E   L + +  + AL +++++L ++L R P++ E A A +  + + RR+L  GR A++K+++ NLRLV+ +  KY      G  FQDL Q G  
Subjt:  PVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVK

Query:  GLITAIDRFEPKRRFRLSTYALFWIRHAIIRSM---------------TLSSF---------------------TRVSFGLDSV----------------
        GLI A ++F+ ++ ++ STYA +WIR AI R++               T+S                       TR+   ++ +                
Subjt:  GLITAIDRFEPKRRFRLSTYALFWIRHAIIRSM---------------TLSSF---------------------TRVSFGLDSV----------------

Query:  -----EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYL
             +  +    + +G   ++     LLR  L+ VL +L P+E  V+R RYGLD    +TL EI    N++RE +R+ E KAL KL+HP R   L+ Y+
Subjt:  -----EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYL

P74565 RNA polymerase sigma factor SigA

2.3e-23

30.42

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Query:  EGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSM----
        E E +   N N    RR+L + R A++K+++ NLRLV+ +  KY      G  FQDL Q G  GLI A ++F+ ++ ++ STYA +WIR AI R++    
Subjt:  EGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSM----

Query:  -----------TLSSFTRVSFGLD------------------SVEEF------------------------INGITDIEGTGGDNRRQPALLRLALDDVL
                   T+S   + +  L                   ++E+                         +    + +G   ++     LLR  L++VL
Subjt:  -----------TLSSFTRVSFGLD------------------SVEEF------------------------INGITDIEGTGGDNRRQPALLRLALDDVL

Query:  DSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYL
        D+L P+E  V+R RYGLD    +TL EI    N++RE +R+ E KAL KL+HP R   L+ Y+
Subjt:  DSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYL

Q31ME3 RNA polymerase sigma factor SigA2

1.1e-22

28.48

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Query:  SEADEIDDLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHN
        S A    DLVR Y      V L          L + E     + VQ +  L+  Q +L+  LG EP++ E A A ++N+  + RQ+E G+ A+ K+I+ N
Subjt:  SEADEIDDLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHN

Query:  LRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFT-------------------------------
        LRLV+ +  KY +      +F DL Q G  GL   +++F+P + ++ STYA +WIR AI R++   S T                               
Subjt:  LRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFT-------------------------------

Query:  -----RVSFGLDSVEEFI---------------NGITDIEGTGGDNRRQPA------LLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLN
              +   L+ V E+I               +  T+++    D +  P+       LR  L +++  L P++  VI  RYGLD   + +L ++   LN
Subjt:  -----RVSFGLDSVEEFI---------------NGITDIEGTGGDNRRQPA------LLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLN

Query:  ISREMVRKHEVKALMKLKHPARV
        ISRE VRK E +A+  L+  +R+
Subjt:  ISREMVRKHEVKALMKLKHPARV

Q9ZNX9 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial

2.0e-147

57.25

Show/hide

Query:  MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTTL-VSPHEQVTLPVE--SNKRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYNEA
        MGVV++SSSAAR+PL LG     H S+LK+PSIVAFKAD  +N+ L + P EQV +P E  + K+ +    K  K+ K+  ++  + A  C+L VDYNEA
Subjt:  MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTTL-VSPHEQVTLPVE--SNKRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYNEA

Query:  AAKLENIFKLSPVTE---DTDMESKDGRPKRGQQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEGKAAPSLRKQKDTK--SEADEIDDLVRDY
        AA+LE+I+KLSP T    + D+E    + K  ++R++K        +VRN  K+ KR+ LD+RIALK + + K   +   +K TK   E ++I+ LVRDY
Subjt:  AAKLENIFKLSPVTE---DTDMESKDGRPKRGQQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEGKAAPSLRKQKDTK--SEADEIDDLVRDY

Query:  SASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFE
        SAS D+VSLDWKKMKIPPVL S+EH  LFKL+QPMKAL++V++ LQK LGREP E E+A   NM   +V++++E+GRAARNKLIKHNLRLVLFV+NKYF 
Subjt:  SASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFE

Query:  DFASGPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV-----------------------------------
        +F +GPKFQDLCQAG++GLITAIDRFEPKR+FRLSTY LFWIRHAIIRSMT S+FTRV FGL+SV                                   
Subjt:  DFASGPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV-----------------------------------

Query:  ---------------------EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKAL
                             EEFINGITD++G G +N RQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKG+RTLGEIAGNLNISREMVRKHEVKAL
Subjt:  ---------------------EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKAL

Query:  MKLKHPARVDYLRRYLI
        MKLKH ARVDYLR+Y++
Subjt:  MKLKHPARVDYLRRYLI

Arabidopsis top hits

e value

%identity

Alignment

AT1G08540.1 RNApolymerase sigma subunit 2

4.2e-20

24.81

Show/hide

Query:  QQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEG----KAAPSLRKQKDTKSEADEIDDL--VRDYSASTDLVSLDWKKMKIPPVLPSSEHTRL
        Q+  +  +++PS  +    T++ +R    R   L+ +  G    K   S +K++    E D  D L  +R  ++S+ L+++              E   L
Subjt:  QQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEG----KAAPSLRKQKDTKSEADEIDDL--VRDYSASTDLVSLDWKKMKIPPVLPSSEHTRL

Query:  FKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEP
           +Q +  L ++Q +L +  GR+PT  + A+A  ++   +R+++  G   ++K+IK N+RLV+ +   Y     +G   QDL Q G +GL+   ++F+ 
Subjt:  FKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEP

Query:  KRRFRLSTYALFWIRHAIIRSMT-LSSFTRVSF---------------------------------------------------------GLDSVEEFIN
         + F+ STYA +WI+ A+ +S++  S   R+ F                                                         G++   +   
Subjt:  KRRFRLSTYALFWIRHAIIRSMT-LSSFTRVSF---------------------------------------------------------GLDSVEEFIN

Query:  GITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYLI
         I D E    ++      +R  LD VLDSL  +E  VIR R+G++    +TL EI   + +SRE VR+ E  A  KLK+  R ++L++YL+
Subjt:  GITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYLI

AT1G64860.1 sigma factor A

1.0e-13

25.93

Show/hide

Query:  VLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKG
        VL   E  RL K ++    L   +  L+  LG EP++ +LA +  ++  +++  L     AR KL   N+RLV+ +  +Y      G +  DL Q G+ G
Subjt:  VLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKG

Query:  LITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFT-------------------------------RVSFGLDSVEEFINGITD-------------
        L+  I++F+  + FR+STY  +WIR  + R++  +S T                               R++  L+  ++ +   T+             
Subjt:  LITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFT-------------------------------RVSFGLDSVEEFINGITD-------------

Query:  --------------IEGTGGDNRRQPALLRLALDD-----VLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR
                      I  T  +N        LAL +     +  +L  +E  +IR  YGLD K   T  +I+  + +SRE VR+  + AL KLKH AR
Subjt:  --------------IEGTGGDNRRQPALLRLALDD-----VLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR

AT2G36990.1 RNApolymerase sigma-subunit F

7.9e-19

27.13

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Query:  PSDGIVRNQTKRIKRLDLDRRIALKSS---KEGKAAPSLRKQKDTKSEADEIDDLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQV
        P  G +    ++++R   +RR A KS+    EG        +K  K  AD  DD ++ +    +   L          L + E   L   +Q +  L +V
Subjt:  PSDGIVRNQTKRIKRLDLDRRIALKSS---KEGKAAPSLRKQKDTKSEADEIDDLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQV

Query:  QEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFW
        +  L+ + G EPT GE A A  ++   ++  +  GR++R KLI  NLRLV+ +  +Y      G  FQDL Q G  GL+ ++++F+P+   R +TYA +W
Subjt:  QEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFW

Query:  IRHAIIRSMTLSSFT-----RVSFGLDSVEE----------FINGITDIEGTGG----------DNRRQP------------------------------
        IR +I +S+  +S T      V   L  V E          +     ++ G  G           N R P                              
Subjt:  IRHAIIRSMTLSSFT-----RVSFGLDSVEE----------FINGITDIEGTGG----------DNRRQP------------------------------

Query:  ---ALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRY
            L+R  + ++L+ L PKE  +I+ R+G+DG   R+L EI     +S+E VR+ E +AL +LK       L  Y
Subjt:  ---ALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRY

AT3G53920.1 RNApolymerase sigma-subunit C

2.6e-14

25.5

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Query:  SSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLIT
        S   T +   V+ +  + +++  L++E G+  +    A A  MN   + R L  G   R++L+K    LVLF+   Y      G   +DL QAG  G++ 
Subjt:  SSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLIT

Query:  AIDRFEPKRRFRLSTYALFWI---------RHA--------IIRSM--------TLSSFTRVSFGLD---------------SVEEFINGITDIEGTGGD
          +RF+  R ++ STY  +WI         RHA        IIR++        TL +   + +  D               +  + +  +  I+   GD
Subjt:  AIDRFEPKRRFRLSTYALFWI---------RHA--------IIRSM--------TLSSFTRVSFGLD---------------SVEEFINGITDIEGTGGD

Query:  ---------------NRRQPALLRLA----LDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYL
                          + A++R +    + D+L+ L+P+E  V+  RYGL     ++L EI   L +S+E +RK E +A+ KL+     + LR YL
Subjt:  ---------------NRRQPALLRLA----LDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYL

AT5G24120.1 sigma factor E

1.4e-148

57.25

Show/hide

Query:  MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTTL-VSPHEQVTLPVE--SNKRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYNEA
        MGVV++SSSAAR+PL LG     H S+LK+PSIVAFKAD  +N+ L + P EQV +P E  + K+ +    K  K+ K+  ++  + A  C+L VDYNEA
Subjt:  MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTTL-VSPHEQVTLPVE--SNKRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYNEA

Query:  AAKLENIFKLSPVTE---DTDMESKDGRPKRGQQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEGKAAPSLRKQKDTK--SEADEIDDLVRDY
        AA+LE+I+KLSP T    + D+E    + K  ++R++K        +VRN  K+ KR+ LD+RIALK + + K   +   +K TK   E ++I+ LVRDY
Subjt:  AAKLENIFKLSPVTE---DTDMESKDGRPKRGQQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEGKAAPSLRKQKDTK--SEADEIDDLVRDY

Query:  SASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFE
        SAS D+VSLDWKKMKIPPVL S+EH  LFKL+QPMKAL++V++ LQK LGREP E E+A   NM   +V++++E+GRAARNKLIKHNLRLVLFV+NKYF 
Subjt:  SASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFE

Query:  DFASGPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV-----------------------------------
        +F +GPKFQDLCQAG++GLITAIDRFEPKR+FRLSTY LFWIRHAIIRSMT S+FTRV FGL+SV                                   
Subjt:  DFASGPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV-----------------------------------

Query:  ---------------------EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKAL
                             EEFINGITD++G G +N RQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKG+RTLGEIAGNLNISREMVRKHEVKAL
Subjt:  ---------------------EEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKAL

Query:  MKLKHPARVDYLRRYLI
        MKLKH ARVDYLR+Y++
Subjt:  MKLKHPARVDYLRRYLI

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATGGTAGCTATAGCTAAATGCACCAAAAAGGCTGCTTCCAAGTCTTATGCTAATGACTTGCTACTTGGTATGGGAGTTGTGACTGTTTCAAGCTCGGCAGCACGAAC
TCCTCTTCGGCTGGGCGCAAAGTTTTCCAATCACAATTCTACATTGAAAAGACCGTCGATTGTCGCTTTTAAAGCGGATAAGCATACTAACACTACTTTGGTGTCACCTC
ACGAGCAAGTGACCCTGCCTGTGGAGAGTAATAAAAGAAACCAGAAAAGATCAGGAAAAACTAGTAAATCTTTGAAGAGAGTTAAAGCTGTCTTTATTGATGAAGCTACT
CCCTGTACTTTGGATGTGGATTACAATGAGGCTGCTGCTAAACTTGAAAACATATTCAAGCTTAGCCCTGTGACAGAGGATACTGATATGGAAAGTAAAGATGGAAGACC
AAAAAGAGGCCAGCAAAGGAGGAAAAAATCAGACAAGAGACCTAGTGATGGCATTGTCAGGAACCAGACTAAGAGGATTAAGCGACTAGATCTCGACAGGAGGATAGCAT
TGAAAAGTAGTAAGGAAGGCAAAGCAGCTCCGTCATTAAGGAAACAAAAAGATACCAAAAGTGAAGCTGATGAGATTGATGATCTTGTTAGAGACTACTCTGCTTCAACT
GATTTGGTTAGTTTGGACTGGAAAAAAATGAAGATTCCTCCTGTTCTTCCTTCATCAGAGCATACCCGTTTGTTCAAGTTGGTTCAACCAATGAAGGCACTTATTCAAGT
ACAAGAAGATCTGCAGAAAGAACTGGGAAGAGAACCAACAGAAGGTGAATTGGCCAATGCAACAAATATGAATGTAATTCAAGTAAGGAGACAGTTGGAGGTTGGTCGTG
CTGCCAGAAACAAGCTCATCAAGCATAATCTCCGCCTTGTATTGTTTGTGATCAACAAATACTTCGAAGATTTTGCAAGTGGCCCAAAATTTCAAGACCTTTGTCAAGCA
GGAGTCAAGGGACTCATTACAGCAATTGATCGCTTTGAACCAAAGAGGAGATTCCGGCTATCGACTTATGCTTTATTTTGGATAAGGCATGCTATTATTCGGTCAATGAC
TCTCTCGAGCTTCACACGTGTCTCATTTGGACTTGACTCGGTTGAAGAGTTTATCAATGGGATCACTGATATAGAAGGTACTGGAGGCGACAACCGGAGGCAACCAGCTC
TTCTGAGGCTTGCTCTTGACGATGTGCTTGATTCTCTTAAGCCAAAGGAGAGCTTGGTGATCAGACAAAGATACGGTCTCGATGGCAAAGGAAACCGAACATTAGGTGAG
ATAGCTGGAAATCTAAACATTTCGAGAGAAATGGTTCGGAAGCACGAAGTCAAAGCTCTCATGAAGCTCAAGCATCCTGCAAGAGTGGATTACCTTCGTCGGTATTTAAT
CTGA

mRNA sequence

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Protein sequence

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MMVAIAKCTKKAASKSYANDLLLGMGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNKRNQKRSGKTSKSLKRVKAVFIDEAT
PCTLDVDYNEAAAKLENIFKLSPVTEDTDMESKDGRPKRGQQRRKKSDKRPSDGIVRNQTKRIKRLDLDRRIALKSSKEGKAAPSLRKQKDTKSEADEIDDLVRDYSAST
DLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQA
GVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVEEFINGITDIEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGE
IAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYLI

Spg002584 (gene) of Sponge gourd (cylindrica) v1 genome