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Spg002611 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002611
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionB3 domain-containing transcription factor VRN1-like
Genome locationscaffold6:3109794..3110224
RNA-Seq ExpressionSpg002611
SyntenySpg002611
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044698.1 B3 domain-containing transcription factor VRN1-like [Cucumis melo var. makuwa]6.5e-2156.48Show/hide
Query:  LKTRNPSFL-------------YIPSSFATKYLSSKKEIVEIQDGSKGR-KWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKF
        +KT+NPSF+             YIPSSF  KYL  + EI+EIQ  S  R +W+I C   G  +KRMG GW VFC+E+NLR GD+VVFELVKRS NRVMKF
Subjt:  LKTRNPSFL-------------YIPSSFATKYLSSKKEIVEIQDGSKGR-KWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKF

Query:  TVFSSAAL
        TVF S A+
Subjt:  TVFSSAAL

KGN53194.1 hypothetical protein Csa_015033 [Cucumis sativus]6.1e-1952.63Show/hide
Query:  QAAIETLKTRNPSFL-------------YIPSSFATKYLSSKKEIVEIQD-GSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSN
        +A  + +KT NPSF+             YIPSSF  KYLS + EI+EIQ   S+  +WKI C   G ++KRMG GW VF +E+NLR GD+VVFELVK + 
Subjt:  QAAIETLKTRNPSFL-------------YIPSSFATKYLSSKKEIVEIQD-GSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSN

Query:  NRVMKFTVFSSAAL
        NRVMKFTVFSS ++
Subjt:  NRVMKFTVFSSAAL

XP_004146931.1 B3 domain-containing protein At3g18960 [Cucumis sativus]6.1e-1952.63Show/hide
Query:  QAAIETLKTRNPSFL-------------YIPSSFATKYLSSKKEIVEIQD-GSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSN
        +A  + +KT NPSF+             YIPSSF  KYLS + EI+EIQ   S+  +WKI C   G ++KRMG GW VF +E+NLR GD+VVFELVK + 
Subjt:  QAAIETLKTRNPSFL-------------YIPSSFATKYLSSKKEIVEIQD-GSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSN

Query:  NRVMKFTVFSSAAL
        NRVMKFTVFSS ++
Subjt:  NRVMKFTVFSSAAL

XP_008453826.1 PREDICTED: B3 domain-containing transcription factor VRN1-like [Cucumis melo]6.5e-2156.48Show/hide
Query:  LKTRNPSFL-------------YIPSSFATKYLSSKKEIVEIQDGSKGR-KWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKF
        +KT+NPSF+             YIPSSF  KYL  + EI+EIQ  S  R +W+I C   G  +KRMG GW VFC+E+NLR GD+VVFELVKRS NRVMKF
Subjt:  LKTRNPSFL-------------YIPSSFATKYLSSKKEIVEIQDGSKGR-KWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKF

Query:  TVFSSAAL
        TVF S A+
Subjt:  TVFSSAAL

XP_022141112.1 B3 domain-containing transcription factor VRN1-like [Momordica charantia]2.1e-2760.53Show/hide
Query:  MTLQAAIETLKTRNPSFL-------------YIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKR
        M ++AA + LKT+NPSF+             YIPSSF+ KYLSSK EI+E+Q G +GRKW+I C  +G TSKRMGRGWR F RENNLRAGD++VFELV+R
Subjt:  MTLQAAIETLKTRNPSFL-------------YIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKR

Query:  SNNRVMKFTVFSSA
        S   V+ FTVFSSA
Subjt:  SNNRVMKFTVFSSA

TrEMBL top hitse value%identityAlignment
A0A067LMY1 Uncharacterized protein9.5e-1037.07Show/hide
Query:  QAAIET---LKTRNPSF-------------LYIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKR
        Q AIE    LK +NPSF             LY+PS FA +YLS   + +++Q  S G++W +   + G     +G+GW++FCREN L  GD+ +FEL+  
Subjt:  QAAIET---LKTRNPSF-------------LYIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKR

Query:  SNNRVMKFTVFSSAAL
         NN V+K  +F +  +
Subjt:  SNNRVMKFTVFSSAAL

A0A0A0KWD7 Uncharacterized protein2.9e-1952.63Show/hide
Query:  QAAIETLKTRNPSFL-------------YIPSSFATKYLSSKKEIVEIQD-GSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSN
        +A  + +KT NPSF+             YIPSSF  KYLS + EI+EIQ   S+  +WKI C   G ++KRMG GW VF +E+NLR GD+VVFELVK + 
Subjt:  QAAIETLKTRNPSFL-------------YIPSSFATKYLSSKKEIVEIQD-GSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSN

Query:  NRVMKFTVFSSAAL
        NRVMKFTVFSS ++
Subjt:  NRVMKFTVFSSAAL

A0A1S3BY01 B3 domain-containing transcription factor VRN1-like3.1e-2156.48Show/hide
Query:  LKTRNPSFL-------------YIPSSFATKYLSSKKEIVEIQDGSKGR-KWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKF
        +KT+NPSF+             YIPSSF  KYL  + EI+EIQ  S  R +W+I C   G  +KRMG GW VFC+E+NLR GD+VVFELVKRS NRVMKF
Subjt:  LKTRNPSFL-------------YIPSSFATKYLSSKKEIVEIQDGSKGR-KWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKF

Query:  TVFSSAAL
        TVF S A+
Subjt:  TVFSSAAL

A0A5D3D2U2 B3 domain-containing transcription factor VRN1-like3.1e-2156.48Show/hide
Query:  LKTRNPSFL-------------YIPSSFATKYLSSKKEIVEIQDGSKGR-KWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKF
        +KT+NPSF+             YIPSSF  KYL  + EI+EIQ  S  R +W+I C   G  +KRMG GW VFC+E+NLR GD+VVFELVKRS NRVMKF
Subjt:  LKTRNPSFL-------------YIPSSFATKYLSSKKEIVEIQDGSKGR-KWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKF

Query:  TVFSSAAL
        TVF S A+
Subjt:  TVFSSAAL

A0A6J1CIY2 B3 domain-containing transcription factor VRN1-like1.0e-2760.53Show/hide
Query:  MTLQAAIETLKTRNPSFL-------------YIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKR
        M ++AA + LKT+NPSF+             YIPSSF+ KYLSSK EI+E+Q G +GRKW+I C  +G TSKRMGRGWR F RENNLRAGD++VFELV+R
Subjt:  MTLQAAIETLKTRNPSFL-------------YIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKR

Query:  SNNRVMKFTVFSSA
        S   V+ FTVFSSA
Subjt:  SNNRVMKFTVFSSA

SwissProt top hitse value%identityAlignment
Q851V1 Putative B3 domain-containing protein Os03g06216001.2e-0432.91Show/hide
Query:  PSFLYIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVM
        P  + I   +A  YL  +   V +Q    G+ W + C  +   SKR  +GWR F  +N L  GD+ +F+L+K     VM
Subjt:  PSFLYIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVM

Q851V5 Putative B3 domain-containing protein Os03g06216003.0e-0535.94Show/hide
Query:  FATKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKR
        +A  YL  K+  + +Q    G+ W++ C    + +KR+  GW  F +ENNL+ GD+ +FEL+K+
Subjt:  FATKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKR

Q8GYM4 B3 domain-containing protein REM141.0e-0533.77Show/hide
Query:  LYIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCD-RSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVM
        LY+P  F  +    K+    I    KG+ W +D   +    +  + RGWR FC  N LRAG ++ F+L+K+S   V+
Subjt:  LYIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCD-RSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVM

Q8L3W1 B3 domain-containing transcription factor VRN17.3e-0739.51Show/hide
Query:  LYIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKFTVF
        +Y+PS FA KYLS     +++Q   K  +W + C      +K   +GW  F  ENNL  GD+ VFEL+ R+ + V+K T F
Subjt:  LYIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKFTVF

Q9XIB5 B3 domain-containing protein REM199.5e-0738.27Show/hide
Query:  LYIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKFTVF
        +Y+PS FA KYLS     +++Q G K  +W + C      +K   +GW  F  ENN+  GD+ VFEL+ R+ + V++ T F
Subjt:  LYIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKFTVF

Arabidopsis top hitse value%identityAlignment
AT1G49480.1 related to vernalization1 16.7e-0838.27Show/hide
Query:  LYIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKFTVF
        +Y+PS FA KYLS     +++Q G K  +W + C      +K   +GW  F  ENN+  GD+ VFEL+ R+ + V++ T F
Subjt:  LYIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKFTVF

AT2G24645.1 Transcriptional factor B3 family protein7.4e-0733.77Show/hide
Query:  LYIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCD-RSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVM
        LY+P  F  +    K+    I    KG+ W +D   +    +  + RGWR FC  N LRAG ++ F+L+K+S   V+
Subjt:  LYIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCD-RSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVM

AT2G24700.1 Transcriptional factor B3 family protein2.2e-0638.75Show/hide
Query:  LYIPSSFA-TKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKR--MGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMK
        LYIP  FA +  L +K +IV + +  +G  WKID  R      R  M RGWR FC  N  + GD+  F+LVK     +++
Subjt:  LYIPSSFA-TKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKR--MGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMK

AT3G18990.1 AP2/B3-like transcriptional factor family protein5.2e-0839.51Show/hide
Query:  LYIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKFTVF
        +Y+PS FA KYLS     +++Q   K  +W + C      +K   +GW  F  ENNL  GD+ VFEL+ R+ + V+K T F
Subjt:  LYIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKFTVF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGCTCCAAGCAGCCATCGAGACGCTGAAGACTCGAAATCCTTCATTCTTGTACATTCCTTCCAGTTTTGCCACCAAGTATCTGAGTAGCAAGAAAGAAATCGTCGA
AATTCAAGACGGTTCCAAGGGGCGAAAATGGAAGATTGACTGCGACCGATCGGGATCGACGTCGAAGCGAATGGGAAGAGGATGGAGGGTGTTTTGCAGGGAAAACAATC
TGAGAGCTGGAGATTTGGTTGTGTTTGAGCTTGTCAAGAGGAGCAACAACCGTGTGATGAAATTCACTGTGTTTTCTTCAGCTGCACTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACGCTCCAAGCAGCCATCGAGACGCTGAAGACTCGAAATCCTTCATTCTTGTACATTCCTTCCAGTTTTGCCACCAAGTATCTGAGTAGCAAGAAAGAAATCGTCGA
AATTCAAGACGGTTCCAAGGGGCGAAAATGGAAGATTGACTGCGACCGATCGGGATCGACGTCGAAGCGAATGGGAAGAGGATGGAGGGTGTTTTGCAGGGAAAACAATC
TGAGAGCTGGAGATTTGGTTGTGTTTGAGCTTGTCAAGAGGAGCAACAACCGTGTGATGAAATTCACTGTGTTTTCTTCAGCTGCACTGTGA
Protein sequenceShow/hide protein sequence
MTLQAAIETLKTRNPSFLYIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKFTVFSSAAL