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Spg002732 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002732
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionpentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1
Genome locationscaffold6:4077378..4077761
RNA-Seq ExpressionSpg002732
SyntenySpg002732
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013419.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-0875Show/hide
Query:  MNRICKRLLRVQNHLPSSFRRINGRFSSVSSSILPSPYY-PPKFSPSIPVVS
        MN +CKRLLRV+NH PSSFR +NGRFSSVSSSI PSP Y  PKFS SIP  S
Subjt:  MNRICKRLLRVQNHLPSSFRRINGRFSSVSSSILPSPYY-PPKFSPSIPVVS

XP_008457151.1 PREDICTED: pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 [Cucumis melo]9.2e-0972.55Show/hide
Query:  MNRICKRLLRVQNHLPSSFRRINGRFSSVSSSILPSPYYPPKFSPSIPVVS
        MNRI K LL+ +NH PSSFR INGR SSVS SILP  YYPPKFS SIP  S
Subjt:  MNRICKRLLRVQNHLPSSFRRINGRFSSVSSSILPSPYYPPKFSPSIPVVS

XP_022958744.1 pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 [Cucurbita moschata]1.9e-0976.92Show/hide
Query:  MNRICKRLLRVQNHLPSSFRRINGRFSSVSSSILPSP-YYPPKFSPSIPVVS
        MN +CKRLLRV+NH PSSFR +NGRFSSVSSSI PSP YY PKFS SIP  S
Subjt:  MNRICKRLLRVQNHLPSSFRRINGRFSSVSSSILPSP-YYPPKFSPSIPVVS

XP_023548130.1 pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo]3.2e-0975Show/hide
Query:  MNRICKRLLRVQNHLPSSFRRINGRFSSVSSSILPSP-YYPPKFSPSIPVVS
        MN +CKRL+RV+NH PSSFR +NGRFSSVSSSI PSP YY PKFS SIP  S
Subjt:  MNRICKRLLRVQNHLPSSFRRINGRFSSVSSSILPSP-YYPPKFSPSIPVVS

XP_038874680.1 pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 [Benincasa hispida]4.4e-1178.43Show/hide
Query:  MNRICKRLLRVQNHLPSSFRRINGRFSSVSSSILPSPYYPPKFSPSIPVVS
        MNRI KRLLRV+NH PSSFR INGR SSVSSSILP+ YYPPKFS  IP +S
Subjt:  MNRICKRLLRVQNHLPSSFRRINGRFSSVSSSILPSPYYPPKFSPSIPVVS

TrEMBL top hitse value%identityAlignment
A0A1S3C5I6 pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X14.5e-0972.55Show/hide
Query:  MNRICKRLLRVQNHLPSSFRRINGRFSSVSSSILPSPYYPPKFSPSIPVVS
        MNRI K LL+ +NH PSSFR INGR SSVS SILP  YYPPKFS SIP  S
Subjt:  MNRICKRLLRVQNHLPSSFRRINGRFSSVSSSILPSPYYPPKFSPSIPVVS

A0A5D3BPV0 Pentatricopeptide repeat-containing protein4.5e-0972.55Show/hide
Query:  MNRICKRLLRVQNHLPSSFRRINGRFSSVSSSILPSPYYPPKFSPSIPVVS
        MNRI K LL+ +NH PSSFR INGR SSVS SILP  YYPPKFS SIP  S
Subjt:  MNRICKRLLRVQNHLPSSFRRINGRFSSVSSSILPSPYYPPKFSPSIPVVS

A0A6J1CA28 pentatricopeptide repeat-containing protein At1g73400, mitochondrial3.8e-0866.67Show/hide
Query:  MNRICKRLLRVQNHLPSSFRRINGRFSSVSSSILPSPYYPPKFSPSIPVVS
        MN+ICKRLLRV+N LPSSF   NG F  VSSSI+P  +YPPKF+ SIP  S
Subjt:  MNRICKRLLRVQNHLPSSFRRINGRFSSVSSSILPSPYYPPKFSPSIPVVS

A0A6J1H3Y5 pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X19.0e-1076.92Show/hide
Query:  MNRICKRLLRVQNHLPSSFRRINGRFSSVSSSILPSP-YYPPKFSPSIPVVS
        MN +CKRLLRV+NH PSSFR +NGRFSSVSSSI PSP YY PKFS SIP  S
Subjt:  MNRICKRLLRVQNHLPSSFRRINGRFSSVSSSILPSP-YYPPKFSPSIPVVS

A0A6J1KVS8 pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X11.3e-0875Show/hide
Query:  MNRICKRLLRVQNHLPSSFRRINGRFSSVSSSILPSP-YYPPKFSPSIPVVS
        MN + KRLLRV+NH PSSFR +NGRFSSVSSSI PSP YY PKFS SIP  S
Subjt:  MNRICKRLLRVQNHLPSSFRRINGRFSSVSSSILPSP-YYPPKFSPSIPVVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCGGATTTGCAAGCGCTTGCTTCGTGTTCAAAATCATCTTCCTTCATCATTCCGTCGCATCAATGGCCGTTTCTCGTCTGTAAGTTCTTCGATTCTACCATCTCC
ATATTACCCTCCCAAGTTCTCGCCCTCGATTCCCGTCGTTTCTCGTCTGGTTTTTGGGCATCGACGAGTGGGTATCGCCGATCTGGTCGTGGGTATCGTCGATCTGGTTG
TGGGCGTTGCAGATCTGGTCATGGGTATCGCGATCGAGGGTCGTCCACGCCATTTCTGGAGATCGAGGGTCGTTCACGGGCGTCGTGGGTCTTCGTGCGCAAGGAGGGAC
GAGGGAGAGAGAGGACGTTTAGGGAGGGTCTTTGTGGGTCTTCACCGTGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCGGATTTGCAAGCGCTTGCTTCGTGTTCAAAATCATCTTCCTTCATCATTCCGTCGCATCAATGGCCGTTTCTCGTCTGTAAGTTCTTCGATTCTACCATCTCC
ATATTACCCTCCCAAGTTCTCGCCCTCGATTCCCGTCGTTTCTCGTCTGGTTTTTGGGCATCGACGAGTGGGTATCGCCGATCTGGTCGTGGGTATCGTCGATCTGGTTG
TGGGCGTTGCAGATCTGGTCATGGGTATCGCGATCGAGGGTCGTCCACGCCATTTCTGGAGATCGAGGGTCGTTCACGGGCGTCGTGGGTCTTCGTGCGCAAGGAGGGAC
GAGGGAGAGAGAGGACGTTTAGGGAGGGTCTTTGTGGGTCTTCACCGTGGCTGA
Protein sequenceShow/hide protein sequence
MNRICKRLLRVQNHLPSSFRRINGRFSSVSSSILPSPYYPPKFSPSIPVVSRLVFGHRRVGIADLVVGIVDLVVGVADLVMGIAIEGRPRHFWRSRVVHGRRGSSCARRD
EGERGRLGRVFVGLHRG