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Spg002817 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002817
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionEndonuclease MutS2
Genome locationscaffold6:468007..468624
RNA-Seq ExpressionSpg002817
SyntenySpg002817
Gene Ontology termsGO:0006298 - mismatch repair (biological process)
GO:0045910 - negative regulation of DNA recombination (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0004519 - endonuclease activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
GO:0030983 - mismatched DNA binding (molecular function)
InterPro domainsIPR000432 - DNA mismatch repair protein MutS, C-terminal
IPR027417 - P-loop containing nucleoside triphosphate hydrolase
IPR045076 - DNA mismatch repair MutS family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022922840.1 uncharacterized protein LOC111430703 isoform X1 [Cucurbita moschata]1.1e-2193.65Show/hide
Query:  EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKYRYIM
        EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAK GAALTIATTHHGELKTLKYR ++
Subjt:  EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKYRYIM

XP_022922841.1 uncharacterized protein LOC111430703 isoform X2 [Cucurbita moschata]1.1e-2193.65Show/hide
Query:  EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKYRYIM
        EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAK GAALTIATTHHGELKTLKYR ++
Subjt:  EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKYRYIM

XP_022985050.1 uncharacterized protein LOC111483140 isoform X1 [Cucurbita maxima]1.1e-2193.65Show/hide
Query:  EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKYRYIM
        EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAK GAALTIATTHHGELKTLKYR ++
Subjt:  EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKYRYIM

XP_022985051.1 uncharacterized protein LOC111483140 isoform X2 [Cucurbita maxima]1.1e-2193.65Show/hide
Query:  EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKYRYIM
        EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAK GAALTIATTHHGELKTLKYR ++
Subjt:  EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKYRYIM

XP_022985054.1 uncharacterized protein LOC111483140 isoform X5 [Cucurbita maxima]1.1e-2193.65Show/hide
Query:  EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKYRYIM
        EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAK GAALTIATTHHGELKTLKYR ++
Subjt:  EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKYRYIM

TrEMBL top hitse value%identityAlignment
A0A6J1E586 uncharacterized protein LOC111430703 isoform X25.6e-2293.65Show/hide
Query:  EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKYRYIM
        EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAK GAALTIATTHHGELKTLKYR ++
Subjt:  EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKYRYIM

A0A6J1E9Y4 uncharacterized protein LOC111430703 isoform X15.6e-2293.65Show/hide
Query:  EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKYRYIM
        EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAK GAALTIATTHHGELKTLKYR ++
Subjt:  EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKYRYIM

A0A6J1J709 uncharacterized protein LOC111483140 isoform X25.6e-2293.65Show/hide
Query:  EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKYRYIM
        EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAK GAALTIATTHHGELKTLKYR ++
Subjt:  EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKYRYIM

A0A6J1JA95 uncharacterized protein LOC111483140 isoform X15.6e-2293.65Show/hide
Query:  EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKYRYIM
        EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAK GAALTIATTHHGELKTLKYR ++
Subjt:  EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKYRYIM

A0A6J1JC76 uncharacterized protein LOC111483140 isoform X55.6e-2293.65Show/hide
Query:  EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKYRYIM
        EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAK GAALTIATTHHGELKTLKYR ++
Subjt:  EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKYRYIM

SwissProt top hitse value%identityAlignment
A5D0W6 Endonuclease MutS24.0e-0958.62Show/hide
Query:  NFHEIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELK
        N  EI   +   SLVLLDE+GAGT+P EGAAL  S+LE    +GA  T+ATTH+GELK
Subjt:  NFHEIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELK

C1A4A9 Endonuclease MutS22.3e-0955Show/hide
Query:  NFHEIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTL
        N  EI   +T+ SLVL+DE+G+GT+P EGAALG ++LE+  + G  LT+ATTH G+LK L
Subjt:  NFHEIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTL

C3KTI4 Endonuclease MutS25.2e-0953.97Show/hide
Query:  NFHEIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKYR
        N  EI   +   SLVL DE+GAGT+P EGAAL +S+LE+  K GA + IATTH+ ELK    R
Subjt:  NFHEIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKYR

P73625 Endonuclease MutS22.3e-0964.71Show/hide
Query:  SLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKYR
        SLVLLDEVGAGT+P EG+AL ++LL   A     LT+ATTH+GELK LKY+
Subjt:  SLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKYR

Q67QE3 Endonuclease MutS21.8e-0956.45Show/hide
Query:  NFHEIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKY
        N   I       +LVLLDE+GAGT+P EGAAL MS+LE   K GA  T+ATTH+ ELKT  Y
Subjt:  NFHEIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKY

Arabidopsis top hitse value%identityAlignment
AT1G65070.1 DNA mismatch repair protein MutS, type 21.9e-0641.38Show/hide
Query:  EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLK
        +I  +++  SLVLLDE+ +GT+P EG AL  S+L+ + K+   + + +TH+G+L  LK
Subjt:  EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLK

AT1G65070.2 DNA mismatch repair protein MutS, type 21.9e-0641.38Show/hide
Query:  EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLK
        +I  +++  SLVLLDE+ +GT+P EG AL  S+L+ + K+   + + +TH+G+L  LK
Subjt:  EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLK

AT5G54090.1 DNA mismatch repair protein MutS, type 23.6e-2184.75Show/hide
Query:  EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKY
        EI S STS+SLVLLDEVGAGTNPLEGAALGM++LESFA+SG+ LT+ATTHHGELKTLKY
Subjt:  EIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTTCCATGAGATACAGTCAGTTTCAACTAGTCAGTCGTTGGTACTACTAGATGAAGTTGGTGCAGGAACCAATCCACTGGAGGGAGCTGCACTTGGGATGTCACT
CCTGGAATCTTTTGCTAAATCTGGTGCTGCGTTGACAATCGCGACTACACATCATGGAGAACTTAAAACCCTAAAATATAGGTACATTATGCAAAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGAACTTCCATGAGATACAGTCAGTTTCAACTAGTCAGTCGTTGGTACTACTAGATGAAGTTGGTGCAGGAACCAATCCACTGGAGGGAGCTGCACTTGGGATGTCACT
CCTGGAATCTTTTGCTAAATCTGGTGCTGCGTTGACAATCGCGACTACACATCATGGAGAACTTAAAACCCTAAAATATAGGTACATTATGCAAAGATAA
Protein sequenceShow/hide protein sequence
MNFHEIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKSGAALTIATTHHGELKTLKYRYIMQR