CuGenDBv2

Gene ID	Spg002835
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA-directed RNA polymerases II and V subunit 6B
Genome location	scaffold6:1693564..1695569
RNA-Seq Expression	Spg002835
Synteny	Spg002835
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0015031 - protein transport (biological process) GO:0005665 - RNA polymerase II, core complex (cellular component) GO:0005666 - RNA polymerase III complex (cellular component) GO:0005736 - RNA polymerase I complex (cellular component) GO:0005768 - endosome (cellular component) GO:0016020 - membrane (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0035091 - phosphatidylinositol binding (molecular function)
InterPro domains	IPR006110 - RNA polymerase, subunit omega/K/RPB6 IPR006111 - Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit IPR012293 - RNA polymerase subunit, RPB6/omega IPR020708 - DNA-directed RNA polymerase, 14-18kDa subunit, conserved site IPR028363 - DNA-directed RNA polymerase, subunit RPB6 IPR036161 - RPB6/omega subunit-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6574158.1 DNA-directed RNA polymerases II, IV and V subunit 6A, partial [Cucurbita argyrosperma subsp. sororia]

1.7e-37

100

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Query:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

TYK22284.1 DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis melo var. makuwa]

1.7e-37

100

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Query:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

XP_004140788.1 DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis sativus]

1.7e-37

100

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Query:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

XP_008439178.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis melo]

1.7e-37

100

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Query:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

XP_038878213.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Benincasa hispida]

1.7e-37

100

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Query:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TBT6 PX domain-containing protein

8.4e-38

100

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Query:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

A0A5D3DFB9 DNA-directed RNA polymerases II, IV and V subunit 6A

8.4e-38

100

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Query:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

A0A5D3E797 DNA-directed RNA polymerases II, IV and V subunit 6A-like

8.4e-38

100

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Query:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

A0A6J1HXF2 DNA-directed RNA polymerases II, IV and V subunit 6A-like

8.4e-38

100

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Query:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

A0A6J1J2R7 DNA-directed RNA polymerases II, IV and V subunit 6A-like

8.4e-38

100

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Query:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

SwissProt top hits

e value

%identity

Alignment

O88828 DNA-directed RNA polymerases I, II, and III subunit RPABC2

8.9e-29

85.92

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Query:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED
        MTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Subjt:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED

P61219 DNA-directed RNA polymerases I, II, and III subunit RPABC2

8.9e-29

85.92

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Query:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED
        MTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Subjt:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED

Q32PE0 DNA-directed RNA polymerases I, II, and III subunit RPABC2

1.2e-28

85.92

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Query:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED
        MTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Subjt:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED

Q9FJ98 DNA-directed RNA polymerases II, IV and V subunit 6A

1.6e-38

96.2

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Query:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
        MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPDGS+E+WGVDELIVEDSWKRQVGG
Subjt:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG

Q9SJ96 DNA-directed RNA polymerases II and V subunit 6B

6.2e-38

96.2

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Query:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
        MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD SYE+WGVDELIVEDSWKRQVGG
Subjt:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG

Arabidopsis top hits

e value

%identity

Alignment

AT2G04630.1 RNA polymerase Rpb6

4.4e-39

96.2

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Query:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
        MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD SYE+WGVDELIVEDSWKRQVGG
Subjt:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG

AT5G51940.1 RNA polymerase Rpb6

1.2e-39

96.2

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Query:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
        MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPDGS+E+WGVDELIVEDSWKRQVGG
Subjt:  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG

Sequences

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CDS sequence

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ATGACCAAGTATGAACGTGCTAGAATTTTGGGTACACGGGCCCTCCAGATAAGCATGAATGCTCCTGTGATGGTCGAGTTGGAGGGTGAGACTGATCCACTCGAGATTGC
AATGAAGGAGCTTCGTGAGCGGAAGATACCCTTCACCATCCGTCGCTACCTGCCAGATGGAAGTTATGAAGACTGGGGCGTTGATGAATTGATAGTGGAGGACTCTTGGA
AGAGGCAAGTTGGCGGCGCTTGA

mRNA sequence

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Protein sequence

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MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

Spg002835 (gene) of Sponge gourd (cylindrica) v1 genome