; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg002867 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002867
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSerine hydroxymethyltransferase
Genome locationscaffold6:5420008..5422581
RNA-Seq ExpressionSpg002867
SyntenySpg002867
Gene Ontology termsGO:0006565 - L-serine catabolic process (biological process)
GO:0019264 - glycine biosynthetic process from serine (biological process)
GO:0032259 - methylation (biological process)
GO:0035999 - tetrahydrofolate interconversion (biological process)
GO:0046655 - folic acid metabolic process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0004372 - glycine hydroxymethyltransferase activity (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0030170 - pyridoxal phosphate binding (molecular function)
GO:0070905 - serine binding (molecular function)
InterPro domainsIPR001085 - Serine hydroxymethyltransferase
IPR015422 - Pyridoxal phosphate-dependent transferase, small domain
IPR015424 - Pyridoxal phosphate-dependent transferase
IPR039429 - Serine hydroxymethyltransferase-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576983.1 Serine hydroxymethyltransferase 7, partial [Cucurbita argyrosperma subsp. sororia]3.9e-4484.11Show/hide
Query:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF
        KN+E+VCE+CHITLNKITIFGDNGII PGGVRIGTPAMTSRGCLESDFE I +FLH AAQIAI VQREHGKLPK++L+GLQSNNEVVEL  RV SFSA+F
Subjt:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF

Query:  AMPGFET
        AMPG ET
Subjt:  AMPGFET

XP_022149204.1 serine hydroxymethyltransferase 7-like [Momordica charantia]1.2e-5095.28Show/hide
Query:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF
        KNYEKVCEIC ITLNKITI+GDNGIIIPGGVRIGTPAMTSRGCLESDFETI DFLHTAAQIAISVQREHGKLPK+YLKGLQ+NNEVVELRNRVESFSAQF
Subjt:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF

Query:  AMPGFE
        AMPGFE
Subjt:  AMPGFE

XP_022941930.1 serine hydroxymethyltransferase 7-like [Cucurbita moschata]1.6e-5095.28Show/hide
Query:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF
        KNYE VCEICHITLNKITIFGDNGIIIPGGVR+GTPAMTSRGCLESDFETIADFLHTAAQIAISVQRE+GKLPK+YLKGL SNNEVVELRNRVESFSAQF
Subjt:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF

Query:  AMPGFE
        AMPGFE
Subjt:  AMPGFE

XP_022979958.1 serine hydroxymethyltransferase 7-like [Cucurbita maxima]1.6e-5095.28Show/hide
Query:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF
        KNYE VCEICHITLNKITIFGDNGIIIPGGVR+GTPAMTSRGCLESDFETIADFLHTAAQIAISVQRE+GKLPK+YLKGL SNNEVVELRNRVESFSAQF
Subjt:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF

Query:  AMPGFE
        AMPGFE
Subjt:  AMPGFE

XP_023547556.1 serine hydroxymethyltransferase 7-like [Cucurbita pepo subsp. pepo]1.6e-5095.28Show/hide
Query:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF
        KNYE VCEICHITLNKITIFGDNGIIIPGGVR+GTPAMTSRGCLESDFETIADFLHTAAQIAISVQRE+GKLPK+YLKGL SNNEVVELRNRVESFSAQF
Subjt:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF

Query:  AMPGFE
        AMPGFE
Subjt:  AMPGFE

TrEMBL top hitse value%identityAlignment
A0A6J1D7A8 Serine hydroxymethyltransferase6.0e-5195.28Show/hide
Query:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF
        KNYEKVCEIC ITLNKITI+GDNGIIIPGGVRIGTPAMTSRGCLESDFETI DFLHTAAQIAISVQREHGKLPK+YLKGLQ+NNEVVELRNRVESFSAQF
Subjt:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF

Query:  AMPGFE
        AMPGFE
Subjt:  AMPGFE

A0A6J1E9K3 Serine hydroxymethyltransferase1.2e-4383.18Show/hide
Query:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF
        KN+E+VCE+CHITLNKITIFGDNGII PGGVRIGTPAMTSRGCLESDFE I +FLH AAQIAI VQRE+GKLPK++L+GLQSNNEVVEL  RV SFSA+F
Subjt:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF

Query:  AMPGFET
        AMPG ET
Subjt:  AMPGFET

A0A6J1FV71 Serine hydroxymethyltransferase7.9e-5195.28Show/hide
Query:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF
        KNYE VCEICHITLNKITIFGDNGIIIPGGVR+GTPAMTSRGCLESDFETIADFLHTAAQIAISVQRE+GKLPK+YLKGL SNNEVVELRNRVESFSAQF
Subjt:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF

Query:  AMPGFE
        AMPGFE
Subjt:  AMPGFE

A0A6J1IXT5 Serine hydroxymethyltransferase7.9e-5195.28Show/hide
Query:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF
        KNYE VCEICHITLNKITIFGDNGIIIPGGVR+GTPAMTSRGCLESDFETIADFLHTAAQIAISVQRE+GKLPK+YLKGL SNNEVVELRNRVESFSAQF
Subjt:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF

Query:  AMPGFE
        AMPGFE
Subjt:  AMPGFE

A0A6J1JAX6 Serine hydroxymethyltransferase1.6e-4382.24Show/hide
Query:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF
        KN+E+VCE+CHITLNKITIFGDNGII PGGVRIGTPAMTSRGCLESDFE I +FLH AAQIA+ VQREHGKLPK +L+GLQS+NEVVEL  RV SFSA+F
Subjt:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF

Query:  AMPGFET
        AMPG ET
Subjt:  AMPGFET

SwissProt top hitse value%identityAlignment
O23254 Serine hydroxymethyltransferase 43.8e-2651.96Show/hide
Query:  EKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMP
        EK+C++C ITLNK  +FGD+  + PGGVRIG PAMTSRG +E DFE I +FL  A  + + +Q+ +GKL K + KGL +N ++ +L+  VE FSA + MP
Subjt:  EKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMP

Query:  GF
        GF
Subjt:  GF

Q54EW1 Serine hydroxymethyltransferase 28.2e-2135.67Show/hide
Query:  QANSPDFAENKKK-----QQQLEEIRLRISSLYNIRRKNY----------------EKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESD
        +A+SPDF E  K+     Q   EE++ R  SL      N+                EK C+  HIT+NK  ++GD   I PGGVR+G PA+TSRG  E D
Subjt:  QANSPDFAENKKK-----QQQLEEIRLRISSLYNIRRKNY----------------EKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESD

Query:  FETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMPG
        F  + DFL    +I++ +Q + GK    + + +  N ++ ++R  V+ FS +F MPG
Subjt:  FETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMPG

Q84WV0 Serine hydroxymethyltransferase 71.8e-3668.93Show/hide
Query:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF
        K YEKVCE+CHITLNK  IFGDNG I PGGVRIGTPAMT+RGC+ESDFET+ADFL  AAQI  ++QREHGK  K ++K L +N ++ ELRNRVE+F+ Q+
Subjt:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF

Query:  AMP
         MP
Subjt:  AMP

Q9LM59 Serine hydroxymethyltransferase 61.1e-3666.04Show/hide
Query:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF
        K YEKVCE+CHIT+NK+ IF +NG+I PGGVRIG+PAMTSRGCLE +FET+ADFL+ AAQIA + QREHGKL K  LK +    E+ +LRN+VE+F+ QF
Subjt:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF

Query:  AMPGFE
        AMP F+
Subjt:  AMPGFE

Q9SVM4 Serine hydroxymethyltransferase 51.8e-2854.9Show/hide
Query:  EKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMP
        EKVCE+C+ITLN+  +FGD   + PGGVRIGTPAMTSRG +E DFE I +FLH A  I + +Q ++GK+ K + KGL +N E+ E++  VE F+  F MP
Subjt:  EKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMP

Query:  GF
        GF
Subjt:  GF

Arabidopsis top hitse value%identityAlignment
AT1G22020.1 serine hydroxymethyltransferase 67.6e-3866.04Show/hide
Query:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF
        K YEKVCE+CHIT+NK+ IF +NG+I PGGVRIG+PAMTSRGCLE +FET+ADFL+ AAQIA + QREHGKL K  LK +    E+ +LRN+VE+F+ QF
Subjt:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF

Query:  AMPGFE
        AMP F+
Subjt:  AMPGFE

AT1G36370.1 serine hydroxymethyltransferase 71.3e-3768.93Show/hide
Query:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF
        K YEKVCE+CHITLNK  IFGDNG I PGGVRIGTPAMT+RGC+ESDFET+ADFL  AAQI  ++QREHGK  K ++K L +N ++ ELRNRVE+F+ Q+
Subjt:  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQF

Query:  AMP
         MP
Subjt:  AMP

AT4G13890.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein1.3e-2954.9Show/hide
Query:  EKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMP
        EKVCE+C+ITLN+  +FGD   + PGGVRIGTPAMTSRG +E DFE I +FLH A  I + +Q ++GK+ K + KGL +N E+ E++  VE F+  F MP
Subjt:  EKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMP

Query:  GF
        GF
Subjt:  GF

AT4G13930.1 serine hydroxymethyltransferase 42.7e-2751.96Show/hide
Query:  EKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMP
        EK+C++C ITLNK  +FGD+  + PGGVRIG PAMTSRG +E DFE I +FL  A  + + +Q+ +GKL K + KGL +N ++ +L+  VE FSA + MP
Subjt:  EKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMP

Query:  GF
        GF
Subjt:  GF

AT5G26780.1 serine hydroxymethyltransferase 21.0e-1840.16Show/hide
Query:  LYNIRRK-----NYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQRE-HGKLPKSYLKGLQSN----N
        L N++ K       EKV E+ HI  NK T+ GD   ++PGG+R+GTPA+TSRG +E DF  +A++   A +IA+ ++ E  G   K ++  +QSN    +
Subjt:  LYNIRRK-----NYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQRE-HGKLPKSYLKGLQSN----N

Query:  EVVELRNRVESFSAQFAMPGFE
        E+ +LR  VE ++ QF   GFE
Subjt:  EVVELRNRVESFSAQFAMPGFE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAATCAACCCAGAAAGCCAAGAGGATTTGGAAAAGTTTCTCCAATTGGCAATGACAAGGATGCCACACAGGCAAACAGTCCAGACTTTGCAGAAAATAAAAAGAA
GCAACAACAGCTAGAAGAGATTAGACTGAGGATTTCTTCTTTGTATAATATTAGACGTAAAAACTATGAGAAGGTTTGTGAGATATGCCACATTACTCTCAACAAAATTA
CAATATTTGGTGATAATGGAATTATTATTCCTGGTGGAGTACGGATTGGCACCCCAGCTATGACATCAAGAGGCTGTCTGGAATCTGATTTTGAGACAATTGCTGACTTC
CTTCATACAGCTGCTCAGATTGCAATTTCAGTACAGCGAGAGCATGGGAAGCTACCAAAGTCTTATCTCAAGGGCCTTCAAAGTAATAATGAAGTTGTTGAGCTCAGAAA
CCGTGTTGAAAGTTTCTCAGCTCAATTTGCAATGCCAGGCTTCGAAACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAAATCAACCCAGAAAGCCAAGAGGATTTGGAAAAGTTTCTCCAATTGGCAATGACAAGGATGCCACACAGGCAAACAGTCCAGACTTTGCAGAAAATAAAAAGAA
GCAACAACAGCTAGAAGAGATTAGACTGAGGATTTCTTCTTTGTATAATATTAGACGTAAAAACTATGAGAAGGTTTGTGAGATATGCCACATTACTCTCAACAAAATTA
CAATATTTGGTGATAATGGAATTATTATTCCTGGTGGAGTACGGATTGGCACCCCAGCTATGACATCAAGAGGCTGTCTGGAATCTGATTTTGAGACAATTGCTGACTTC
CTTCATACAGCTGCTCAGATTGCAATTTCAGTACAGCGAGAGCATGGGAAGCTACCAAAGTCTTATCTCAAGGGCCTTCAAAGTAATAATGAAGTTGTTGAGCTCAGAAA
CCGTGTTGAAAGTTTCTCAGCTCAATTTGCAATGCCAGGCTTCGAAACTTGA
Protein sequenceShow/hide protein sequence
MRNQPRKPRGFGKVSPIGNDKDATQANSPDFAENKKKQQQLEEIRLRISSLYNIRRKNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADF
LHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMPGFET