; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg002884 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002884
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUBP-type domain-containing protein
Genome locationscaffold6:4531273..4533994
RNA-Seq ExpressionSpg002884
SyntenySpg002884
Gene Ontology termsGO:0009958 - positive gravitropism (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001607 - Zinc finger, UBP-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044348.1 histone deacetylase 6 [Cucumis melo var. makuwa]1.1e-3970Show/hide
Query:  CISGGSTLCNYAHSPPPLILRGFTHFKASTKKQQRYKIIKNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQE
        C    S   + AH PPP               Q      +NPKENWLCLCCK+VFCSRFVNKHMLQHY+QS HCLALSYSDLSVWCFSCDAYLDAQVIQE
Subjt:  CISGGSTLCNYAHSPPPLILRGFTHFKASTKKQQRYKIIKNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQE

Query:  LRPVHEVAYILKFGEAPPFR
        LRPVHEVAYILKFGE PPFR
Subjt:  LRPVHEVAYILKFGEAPPFR
KAG6600290.1 Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. sororia]4.8e-4096.3Show/hide
Query:  KNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR
        +NPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNH LALSYSDLSVWCFSCDAYLDAQ+IQELRPVHEVAYILKFGEAPPFR
Subjt:  KNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR
KAG7030950.1 Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-4175.42Show/hide
Query:  TLC-NYAHSPPP--LILRGFTHFK-ASTKKQQRYKIIKNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQELR
        +LC + AH PPP       F   + A   +Q  Y   +NPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNH LALSYSDLSVWCFSCDAYLDAQ+IQELR
Subjt:  TLC-NYAHSPPP--LILRGFTHFK-ASTKKQQRYKIIKNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQELR

Query:  PVHEVAYILKFGEAPPFR
        PVHEVAYILKFGEAPPFR
Subjt:  PVHEVAYILKFGEAPPFR
XP_004152271.1 histone deacetylase 6 [Cucumis sativus]8.3e-4070Show/hide
Query:  CISGGSTLCNYAHSPPPLILRGFTHFKASTKKQQRYKIIKNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQE
        C    S   + AH PPP               Q      +NPKENW+CLCCK+VFCSRFVNKHMLQHY+QS HCLALSYSDLSVWCFSCDAYLDAQVIQE
Subjt:  CISGGSTLCNYAHSPPPLILRGFTHFKASTKKQQRYKIIKNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQE

Query:  LRPVHEVAYILKFGEAPPFR
        LRPVHEVAYILKFGEAPPFR
Subjt:  LRPVHEVAYILKFGEAPPFR
XP_008454385.1 PREDICTED: histone deacetylase 6 [Cucumis melo]3.7e-4070.83Show/hide
Query:  CISGGSTLCNYAHSPPPLILRGFTHFKASTKKQQRYKIIKNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQE
        C    S   + AH PPP               Q      +NPKENWLCLCCK+VFCSRFVNKHMLQHY+QS HCLALSYSDLSVWCFSCDAYLDAQVIQE
Subjt:  CISGGSTLCNYAHSPPPLILRGFTHFKASTKKQQRYKIIKNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQE

Query:  LRPVHEVAYILKFGEAPPFR
        LRPVHEVAYILKFGEAPPFR
Subjt:  LRPVHEVAYILKFGEAPPFR
TrEMBL top hitse value%identityAlignment
A0A0A0KT14 UBP-type domain-containing protein4.0e-4070Show/hide
Query:  CISGGSTLCNYAHSPPPLILRGFTHFKASTKKQQRYKIIKNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQE
        C    S   + AH PPP               Q      +NPKENW+CLCCK+VFCSRFVNKHMLQHY+QS HCLALSYSDLSVWCFSCDAYLDAQVIQE
Subjt:  CISGGSTLCNYAHSPPPLILRGFTHFKASTKKQQRYKIIKNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQE

Query:  LRPVHEVAYILKFGEAPPFR
        LRPVHEVAYILKFGEAPPFR
Subjt:  LRPVHEVAYILKFGEAPPFR
A0A1S3BZ94 histone deacetylase 61.8e-4070.83Show/hide
Query:  CISGGSTLCNYAHSPPPLILRGFTHFKASTKKQQRYKIIKNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQE
        C    S   + AH PPP               Q      +NPKENWLCLCCK+VFCSRFVNKHMLQHY+QS HCLALSYSDLSVWCFSCDAYLDAQVIQE
Subjt:  CISGGSTLCNYAHSPPPLILRGFTHFKASTKKQQRYKIIKNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQE

Query:  LRPVHEVAYILKFGEAPPFR
        LRPVHEVAYILKFGEAPPFR
Subjt:  LRPVHEVAYILKFGEAPPFR
A0A5A7TNA2 Histone deacetylase 65.2e-4070Show/hide
Query:  CISGGSTLCNYAHSPPPLILRGFTHFKASTKKQQRYKIIKNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQE
        C    S   + AH PPP               Q      +NPKENWLCLCCK+VFCSRFVNKHMLQHY+QS HCLALSYSDLSVWCFSCDAYLDAQVIQE
Subjt:  CISGGSTLCNYAHSPPPLILRGFTHFKASTKKQQRYKIIKNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQE

Query:  LRPVHEVAYILKFGEAPPFR
        LRPVHEVAYILKFGE PPFR
Subjt:  LRPVHEVAYILKFGEAPPFR
A0A6J1D695 histone deacetylase 61.2e-3993.83Show/hide
Query:  KNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR
        +NPKENWLCLCCKN+ CSRFVNKHMLQHYQQS HCLALSYSDLSVWCFSCDAYLDAQVIQELRPV+EVAYILKFGEAPPFR
Subjt:  KNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR
A0A6J1FUZ8 BTB/POZ domain-containing protein NPY2-like isoform X26.8e-4095.06Show/hide
Query:  KNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR
        +NPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNH LALSYSDLSVWCFSCDAYLDAQ+IQELRPVHEVAYILKFGE PPFR
Subjt:  KNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR
SwissProt top hitse value%identityAlignment
Q20296 Histone deacetylase 62.2e-1144Show/hide
Query:  ENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPP
        E W CL C    C RFVN+H + H+  S+H +ALS +DLSVWC+ CD+Y+       L      A+  KFGE  P
Subjt:  ENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPP
Q54QE6 NAD-dependent deacetylase sir2A3.5e-0946Show/hide
Query:  ENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYL
        ENW+C+ C  V CSR VN H  +H++ + H ++ S+SD S WC++CD Y+
Subjt:  ENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYL
Q7ZUM8 Ubiquitin carboxyl-terminal hydrolase 446.6e-0843.75Show/hide
Query:  WLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYL
        W CL C +V C R++ +H LQH+++ +H LAL  ++L V+C+ CD Y+
Subjt:  WLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYL
Q9UBN7 Histone deacetylase 61.5e-1548.68Show/hide
Query:  KENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPP
        +ENW+CL C  V+C R++N HMLQH+  S H L LSY DLS WC+ C AY+  Q + +   V  +A+  KFGE  P
Subjt:  KENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPP
Q9Z2V5 Histone deacetylase 64.7e-1447.37Show/hide
Query:  KENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPP
        +ENW+CL C  V+CSR+VN HM+ H++ S H L LS  DLS WC+ C AY+     ++L+ V   A+  KFGE  P
Subjt:  KENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPP
Arabidopsis top hitse value%identityAlignment
AT2G14830.2 Regulator of Vps4 activity in the MVB pathway protein2.7e-3678.48Show/hide
Query:  KNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPP
        +NP ENWLCLCCK V CSRFVN+HML H+QQ+ HCLALSYSDLSVWCF C+AYLDAQ+I +LRP+H+ AYILKFGEAPP
Subjt:  KNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPP
AT2G26000.1 zinc finger (C3HC4-type RING finger) family protein3.5e-0431.25Show/hide
Query:  WLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYL
        W+C+ C  V C R+   H  +H++++ HC +L      VW ++ D Y+
Subjt:  WLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYL
AT2G26000.2 zinc finger (C3HC4-type RING finger) family protein3.5e-0431.25Show/hide
Query:  WLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYL
        W+C+ C  V C R+   H  +H++++ HC +L      VW ++ D Y+
Subjt:  WLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGATATCGTTTTCTTTTTTCCTCCCATCTGTTGTGTCTCATCCATGCATATCTGGAGGCTCCACTCTTTGCAATTACGCTCATAGCCCACCTCCATTAATTCTTAG
GGGCTTCACCCACTTCAAGGCCAGCACCAAGAAACAACAAAGATATAAAATTATTAAGAATCCCAAGGAGAACTGGTTGTGCTTATGCTGTAAGAATGTCTTCTGTAGCC
GTTTTGTGAACAAGCACATGCTTCAACATTATCAGCAATCAAACCATTGCCTTGCACTCAGCTACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGATGCGTATTTAGAT
GCACAAGTGATTCAGGAATTACGACCAGTACATGAAGTTGCCTATATACTGAAATTTGGCGAGGCCCCACCATTCCGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGATATCGTTTTCTTTTTTCCTCCCATCTGTTGTGTCTCATCCATGCATATCTGGAGGCTCCACTCTTTGCAATTACGCTCATAGCCCACCTCCATTAATTCTTAG
GGGCTTCACCCACTTCAAGGCCAGCACCAAGAAACAACAAAGATATAAAATTATTAAGAATCCCAAGGAGAACTGGTTGTGCTTATGCTGTAAGAATGTCTTCTGTAGCC
GTTTTGTGAACAAGCACATGCTTCAACATTATCAGCAATCAAACCATTGCCTTGCACTCAGCTACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGATGCGTATTTAGAT
GCACAAGTGATTCAGGAATTACGACCAGTACATGAAGTTGCCTATATACTGAAATTTGGCGAGGCCCCACCATTCCGATAG
Protein sequenceShow/hide protein sequence
MGISFSFFLPSVVSHPCISGGSTLCNYAHSPPPLILRGFTHFKASTKKQQRYKIIKNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLD
AQVIQELRPVHEVAYILKFGEAPPFR