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Spg002893 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002893
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionpre-mRNA-splicing factor CWC25-like isoform X2
Genome locationscaffold6:4289263..4291015
RNA-Seq ExpressionSpg002893
SyntenySpg002893
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600285.1 hypothetical protein SDJN03_05518, partial [Cucurbita argyrosperma subsp. sororia]1.6e-5774.7Show/hide
Query:  RGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTRKRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGRE
        RGW+KDSKEQ+K++ RASGKT TYNSQ+RDEIPQT +ED+HTR RDGSSKLEVD+ AP RKRPAFREKK+T DNEN EKA M SESKK SDPH PQDGRE
Subjt:  RGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTRKRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGRE

Query:  QREERGRDTTRYSEKLNKHVSRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEP
        +REERGRD TRYS+KL+KHV+ D+ +KRDEMK+G Y VRERYGNGGGGGNYRG   D  GG+   P
Subjt:  QREERGRDTTRYSEKLNKHVSRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEP

XP_022942670.1 pre-mRNA-splicing factor CWC25-like isoform X1 [Cucurbita moschata]1.6e-5774.7Show/hide
Query:  RGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTRKRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGRE
        RGW+KDSKEQ+K++ RASGKT TYNSQ+RDEIPQT +ED+HTR RDGSSKLEVD+ AP RKRPAFREKK+T DNEN EKA M SESKK SDPH PQDGRE
Subjt:  RGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTRKRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGRE

Query:  QREERGRDTTRYSEKLNKHVSRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEP
        +REERGRD TRYS+KL+KHV+ D+ +KRDEMK+G Y VRERYGNGGGGGNYRG   D  GG+   P
Subjt:  QREERGRDTTRYSEKLNKHVSRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEP

XP_022984546.1 pre-mRNA-splicing factor CWC25 isoform X1 [Cucurbita maxima]3.5e-5774.7Show/hide
Query:  RGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTRKRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGRE
        RGW+KDSKEQ+K++ RASGKT TYNSQ+RDEIPQT +ED+HTR RDGSSKLEVD+ AP RKRPAFREKK+T DNEN EKA M SESKK SDPH PQDGRE
Subjt:  RGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTRKRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGRE

Query:  QREERGRDTTRYSEKLNKHVSRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEP
        +REERGRD TRYS+KL+KHV+ D+ +KRDEMK+G Y VRERYGNGGGGGNYRG   D  GG+   P
Subjt:  QREERGRDTTRYSEKLNKHVSRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEP

XP_023521659.1 pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo]2.0e-5774.7Show/hide
Query:  RGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTRKRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGRE
        RGW+KDSKEQ+K++ RASGKT TYNSQ+RDEIPQT +ED+HTR RDGSSKLEVD+ AP RKRPAFREKK+T DNEN EKA M SESKK SDPH PQDGRE
Subjt:  RGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTRKRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGRE

Query:  QREERGRDTTRYSEKLNKHVSRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEP
        +REERGRD TRYS+KL+KHV+ D+ +KRDEMK+G Y VRERYGNGGGGGNYRG   D  GG+   P
Subjt:  QREERGRDTTRYSEKLNKHVSRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEP

XP_023548006.1 pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo]2.0e-5774.7Show/hide
Query:  RGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTRKRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGRE
        RGW+KDSKEQ+K++ RASGKT TYNSQ+RDEIPQT +ED+HTR RDGSSKLEVD+ AP RKRPAFREKK+T DNEN EKA M SESKK SDPH PQDGRE
Subjt:  RGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTRKRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGRE

Query:  QREERGRDTTRYSEKLNKHVSRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEP
        +REERGRD TRYS+KL+KHV+ D+ +KRDEMK+G Y VRERYGNGGGGGNYRG   D  GG+   P
Subjt:  QREERGRDTTRYSEKLNKHVSRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEP

TrEMBL top hitse value%identityAlignment
A0A0A0KV12 Uncharacterized protein1.0e-4668.86Show/hide
Query:  ADYSRGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTRKRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQ
        A   RGW+KDSK+ +KD+ RASGK+ TY SQQRDE PQ ARED H    DGSSKLEVDA  P RKRPAFREKK+TVDNE+ EK AMV ESKKS+D H  Q
Subjt:  ADYSRGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTRKRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQ

Query:  DGREQREERGRDTTRYSEKL-NKHVSRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGK
        +GRE+REERGRD  RYSEKL NKH + D+ +KRDEMK+  YPVRERYGNG GGGNYRG   D  GG+
Subjt:  DGREQREERGRDTTRYSEKL-NKHVSRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGK

A0A6J1FPJ0 pre-mRNA-splicing factor CWC25-like isoform X17.5e-5874.7Show/hide
Query:  RGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTRKRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGRE
        RGW+KDSKEQ+K++ RASGKT TYNSQ+RDEIPQT +ED+HTR RDGSSKLEVD+ AP RKRPAFREKK+T DNEN EKA M SESKK SDPH PQDGRE
Subjt:  RGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTRKRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGRE

Query:  QREERGRDTTRYSEKLNKHVSRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEP
        +REERGRD TRYS+KL+KHV+ D+ +KRDEMK+G Y VRERYGNGGGGGNYRG   D  GG+   P
Subjt:  QREERGRDTTRYSEKLNKHVSRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEP

A0A6J1FQX4 pre-mRNA-splicing factor CWC25-like isoform X24.9e-4968.67Show/hide
Query:  RGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTRKRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGRE
        RGW+KDSKEQ+K++ RASGKT TYNSQ+RDEIPQT +ED+HTR RDGSSKLEVD+ AP RKRPAFREKK+T DNEN EKA M SESKK SDPH PQDGRE
Subjt:  RGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTRKRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGRE

Query:  QREERGRDTTRYSEKLNKHVSRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEP
        +REERGRD TRYS+KL+KHV+ D+ +KRDEMK+            GGGGNYRG   D  GG+   P
Subjt:  QREERGRDTTRYSEKLNKHVSRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEP

A0A6J1J5K1 pre-mRNA-splicing factor CWC25 isoform X11.7e-5774.7Show/hide
Query:  RGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTRKRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGRE
        RGW+KDSKEQ+K++ RASGKT TYNSQ+RDEIPQT +ED+HTR RDGSSKLEVD+ AP RKRPAFREKK+T DNEN EKA M SESKK SDPH PQDGRE
Subjt:  RGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTRKRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGRE

Query:  QREERGRDTTRYSEKLNKHVSRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEP
        +REERGRD TRYS+KL+KHV+ D+ +KRDEMK+G Y VRERYGNGGGGGNYRG   D  GG+   P
Subjt:  QREERGRDTTRYSEKLNKHVSRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEP

A0A6J1JAV5 pre-mRNA-splicing factor CWC25 isoform X21.1e-4868.67Show/hide
Query:  RGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTRKRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGRE
        RGW+KDSKEQ+K++ RASGKT TYNSQ+RDEIPQT +ED+HTR RDGSSKLEVD+ AP RKRPAFREKK+T DNEN EKA M SESKK SDPH PQDGRE
Subjt:  RGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTRKRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGRE

Query:  QREERGRDTTRYSEKLNKHVSRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEP
        +REERGRD TRYS+KL+KHV+ D+ +KRDEMK+            GGGGNYRG   D  GG+   P
Subjt:  QREERGRDTTRYSEKLNKHVSRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCGAGAGGCAACAAACAAATTCCCTGCTGATTATTCTCGGGGTTGGTATAAGGATTCAAAGGAACAGAACAAGGATAACCATAGGGCATCTGGAAAGACGACAAC
TTATAATTCACAGCAAAGAGATGAAATACCACAAACTGCAAGGGAGGATAGTCACACAAGGAACCGCGACGGGTCCTCTAAACTGGAGGTTGATGCACCGGCTCCTACTC
GGAAAAGGCCTGCGTTTAGGGAGAAGAAGGTTACAGTAGACAATGAAAATGTTGAGAAAGCAGCTATGGTATCGGAGAGTAAGAAATCGAGTGATCCACACCATCCTCAG
GATGGAAGGGAACAGAGAGAAGAAAGAGGGCGCGATACCACCCGTTATTCAGAGAAACTTAATAAGCATGTCTCCAGAGACATAACTACCAAAAGGGATGAGATGAAGAA
AGGCAGCTACCCAGTGAGAGAAAGGTATGGCAATGGAGGTGGTGGTGGGAATTACAGGGGAGAAGAGATAGATTTGGTGGGAGGCAAGGATATCGAGCCGGTGGTACTCG
TGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCCGAGAGGCAACAAACAAATTCCCTGCTGATTATTCTCGGGGTTGGTATAAGGATTCAAAGGAACAGAACAAGGATAACCATAGGGCATCTGGAAAGACGACAAC
TTATAATTCACAGCAAAGAGATGAAATACCACAAACTGCAAGGGAGGATAGTCACACAAGGAACCGCGACGGGTCCTCTAAACTGGAGGTTGATGCACCGGCTCCTACTC
GGAAAAGGCCTGCGTTTAGGGAGAAGAAGGTTACAGTAGACAATGAAAATGTTGAGAAAGCAGCTATGGTATCGGAGAGTAAGAAATCGAGTGATCCACACCATCCTCAG
GATGGAAGGGAACAGAGAGAAGAAAGAGGGCGCGATACCACCCGTTATTCAGAGAAACTTAATAAGCATGTCTCCAGAGACATAACTACCAAAAGGGATGAGATGAAGAA
AGGCAGCTACCCAGTGAGAGAAAGGTATGGCAATGGAGGTGGTGGTGGGAATTACAGGGGAGAAGAGATAGATTTGGTGGGAGGCAAGGATATCGAGCCGGTGGTACTCG
TGTAG
Protein sequenceShow/hide protein sequence
MFREATNKFPADYSRGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTRKRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQ
DGREQREERGRDTTRYSEKLNKHVSRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEPVVLV