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Spg002904 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002904
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description60S acidic ribosomal protein P1
Genome locationscaffold6:265208..267791
RNA-Seq ExpressionSpg002904
SyntenySpg002904
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0006414 - translational elongation (biological process)
GO:0032147 - activation of protein kinase activity (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0030295 - protein kinase activator activity (molecular function)
GO:0043021 - ribonucleoprotein complex binding (molecular function)
InterPro domainsIPR027534 - Ribosomal protein L12/P1/P2 family
IPR038716 - Ribosomal protein P1/P2, N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6574265.1 60S acidic ribosomal protein P1-1, partial [Cucurbita argyrosperma subsp. sororia]3.1e-4892.44Show/hide
Query:  CISGSTLTMSTSELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEE
        CIS +TLTMSTSELACAYAALALHDDGIAITA+KIA+VVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAA VSVAAPAGGAA+ AAAPAVEE
Subjt:  CISGSTLTMSTSELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEE

Query:  KKEEPKDESDDDLGFSLFD
        KKEEPK+ESDDD+GFSLFD
Subjt:  KKEEPKDESDDDLGFSLFD

XP_022140845.1 60S acidic ribosomal protein P1-like [Momordica charantia]6.5e-4693.69Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEEKKEEPKDE
        MSTSELACAYAA+AL+DDGIAITAEKIA+VVAAAGLCVESYWPSLFAKLAEKR+IGDLLLNVGCGGGAAAPVSVAAPAGGAAA AAAPAVEEKKEEPK+E
Subjt:  MSTSELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEEKKEEPKDE

Query:  SDDDLGFSLFD
        SDDD+GFSLFD
Subjt:  SDDDLGFSLFD

XP_022945965.1 60S acidic ribosomal protein P1-like [Cucurbita moschata]1.2e-4493.69Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEEKKEEPKDE
        MSTSELACAYAALALHDDGIAITA+KIA+VVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAA VSVAAPAGGAA+ AAAPAVEEKKEEPK+E
Subjt:  MSTSELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEEKKEEPKDE

Query:  SDDDLGFSLFD
        SDDD+GFSLFD
Subjt:  SDDDLGFSLFD

XP_022984373.1 60S acidic ribosomal protein P1 [Cucurbita maxima]2.8e-4983.94Show/hide
Query:  VAIT-VRAFDSKQPRGIRCISGSTLTMSTSELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSV
        +AIT + AF SK   G  CI  +TLTMS SELACAYAALAL+DDGIAITA+KIA+VVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSV
Subjt:  VAIT-VRAFDSKQPRGIRCISGSTLTMSTSELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSV

Query:  AAPAGGAAAPAAAPAVEEKKEEPKDESDDDLGFSLFD
        AA AGGA+A AAAPAVEEKKEEPK+ESDDD+GFSLFD
Subjt:  AAPAGGAAAPAAAPAVEEKKEEPKDESDDDLGFSLFD

XP_023551718.1 60S acidic ribosomal protein P1 [Cucurbita pepo subsp. pepo]5.7e-5083.7Show/hide
Query:  AITVRAFDSKQPRGIRCISGSTLTMSTSELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAA
        +IT+ AF SK   G  C+  +TLTMS+SELACAYAALAL+DDGIAITA+KIA+VVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAA
Subjt:  AITVRAFDSKQPRGIRCISGSTLTMSTSELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAA

Query:  PAGGAAAPAAAPAVEEKKEEPKDESDDDLGFSLFD
         AGGA+A AAAPAVEEKKEEPK+ESDDD+GFSLFD
Subjt:  PAGGAAAPAAAPAVEEKKEEPKDESDDDLGFSLFD

TrEMBL top hitse value%identityAlignment
A0A6J1CGB2 60S acidic ribosomal protein P1-like3.2e-4693.69Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEEKKEEPKDE
        MSTSELACAYAA+AL+DDGIAITAEKIA+VVAAAGLCVESYWPSLFAKLAEKR+IGDLLLNVGCGGGAAAPVSVAAPAGGAAA AAAPAVEEKKEEPK+E
Subjt:  MSTSELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEEKKEEPKDE

Query:  SDDDLGFSLFD
        SDDD+GFSLFD
Subjt:  SDDDLGFSLFD

A0A6J1E4K8 60S acidic ribosomal protein P13.0e-4490.99Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEEKKEEPKDE
        MS+SELACAYAALAL+DDGIAITA+KIA+VVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAA A GA+A AAAPAVEEKKEEPK+E
Subjt:  MSTSELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEEKKEEPKDE

Query:  SDDDLGFSLFD
        SDDD+GFSLFD
Subjt:  SDDDLGFSLFD

A0A6J1G2H4 60S acidic ribosomal protein P1-like6.0e-4593.69Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEEKKEEPKDE
        MSTSELACAYAALALHDDGIAITA+KIA+VVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAA VSVAAPAGGAA+ AAAPAVEEKKEEPK+E
Subjt:  MSTSELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEEKKEEPKDE

Query:  SDDDLGFSLFD
        SDDD+GFSLFD
Subjt:  SDDDLGFSLFD

A0A6J1HYH2 60S acidic ribosomal protein P1-like5.0e-4491.89Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEEKKEEPKDE
        MSTSEL CAYAALALHDDGIAITA+KIA+VVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAA VSVAAPAGGAA+ AAAPAVEEK+EEPK+E
Subjt:  MSTSELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEEKKEEPKDE

Query:  SDDDLGFSLFD
        SDDD+GFSLFD
Subjt:  SDDDLGFSLFD

A0A6J1JAB2 60S acidic ribosomal protein P11.4e-4983.94Show/hide
Query:  VAIT-VRAFDSKQPRGIRCISGSTLTMSTSELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSV
        +AIT + AF SK   G  CI  +TLTMS SELACAYAALAL+DDGIAITA+KIA+VVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSV
Subjt:  VAIT-VRAFDSKQPRGIRCISGSTLTMSTSELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSV

Query:  AAPAGGAAAPAAAPAVEEKKEEPKDESDDDLGFSLFD
        AA AGGA+A AAAPAVEEKKEEPK+ESDDD+GFSLFD
Subjt:  AAPAGGAAAPAAAPAVEEKKEEPKDESDDDLGFSLFD

SwissProt top hitse value%identityAlignment
O23095 60S acidic ribosomal protein P1-25.2e-3065.49Show/hide
Query:  MST-SELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGC-GGGAAAPVSVAAPAGGAAAPAAAPAVEEKKEEPK
        MST  ELAC+YA + L D+GIAIT++KIA++V AAG+ +ESYWP LFAK+AEKR++ DL++NVG  GGG  APVS AAPA    A AAAPA EEKK+EP 
Subjt:  MST-SELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGC-GGGAAAPVSVAAPAGGAAAPAAAPAVEEKKEEPK

Query:  DESDDDLGFSLFD
        +ESD DLGF LFD
Subjt:  DESDDDLGFSLFD

P52855 60S acidic ribosomal protein P19.2e-3575.68Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEEKKEEPKDE
        M++ ELAC YAAL L DDGIAITAEKIA++V AA + VESYWP+LFAKL EKR++ DL+L+VG GGG AAPV+ AAPAGGAAA AAAPAVEEKKEE K+E
Subjt:  MSTSELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEEKKEEPKDE

Query:  SDDDLGFSLFD
        SDDD+GFSLFD
Subjt:  SDDDLGFSLFD

Q8LCW9 60S acidic ribosomal protein P1-11.8e-3064.29Show/hide
Query:  MST-SELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEEKKEEPKD
        MST  ELAC+YA + L D+GIAITA+KIA++V AAG+ +ESYWP LFAK+AEKR++ DL++NVG GGG  APV+ AAPA G  A AA  A E+KK+EP +
Subjt:  MST-SELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEEKKEEPKD

Query:  ESDDDLGFSLFD
        ESD DLGF LFD
Subjt:  ESDDDLGFSLFD

Q8LEQ0 60S acidic ribosomal protein P1-32.8e-3166.37Show/hide
Query:  MST-SELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEE-KKEEPK
        MST  ELAC+YA + L D+GIAITA+KIA++V AAG+ +ESYWP LFAK+AEKR++ DL++NVG GGG  APV+ AAPA G  A AAAPA EE KK+EP 
Subjt:  MST-SELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEE-KKEEPK

Query:  DESDDDLGFSLFD
        +ESD DLGF LFD
Subjt:  DESDDDLGFSLFD

Q9HGV0 60S acidic ribosomal protein P17.8e-2663.39Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIASVVAAAGLC-VESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEEKKEEPKD
        MST+ELAC+YAAL L DDG+ ITA+KI +++ AA +  VE  W SLFAK  E +DI DLL NVG  GGAAAP +V   A GAAAPA A A EEKKEE K+
Subjt:  MSTSELACAYAALALHDDGIAITAEKIASVVAAAGLC-VESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEEKKEEPKD

Query:  ESDDDLGFSLFD
        ESD+D+GF LFD
Subjt:  ESDDDLGFSLFD

Arabidopsis top hitse value%identityAlignment
AT1G01100.1 60S acidic ribosomal protein family1.3e-3164.29Show/hide
Query:  MST-SELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEEKKEEPKD
        MST  ELAC+YA + L D+GIAITA+KIA++V AAG+ +ESYWP LFAK+AEKR++ DL++NVG GGG  APV+ AAPA G  A AA  A E+KK+EP +
Subjt:  MST-SELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEEKKEEPKD

Query:  ESDDDLGFSLFD
        ESD DLGF LFD
Subjt:  ESDDDLGFSLFD

AT1G01100.2 60S acidic ribosomal protein family1.3e-3164.29Show/hide
Query:  MST-SELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEEKKEEPKD
        MST  ELAC+YA + L D+GIAITA+KIA++V AAG+ +ESYWP LFAK+AEKR++ DL++NVG GGG  APV+ AAPA G  A AA  A E+KK+EP +
Subjt:  MST-SELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEEKKEEPKD

Query:  ESDDDLGFSLFD
        ESD DLGF LFD
Subjt:  ESDDDLGFSLFD

AT1G01100.4 60S acidic ribosomal protein family1.3e-3164.29Show/hide
Query:  MST-SELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEEKKEEPKD
        MST  ELAC+YA + L D+GIAITA+KIA++V AAG+ +ESYWP LFAK+AEKR++ DL++NVG GGG  APV+ AAPA G  A AA  A E+KK+EP +
Subjt:  MST-SELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEEKKEEPKD

Query:  ESDDDLGFSLFD
        ESD DLGF LFD
Subjt:  ESDDDLGFSLFD

AT5G47700.1 60S acidic ribosomal protein family2.0e-3266.37Show/hide
Query:  MST-SELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEE-KKEEPK
        MST  ELAC+YA + L D+GIAITA+KIA++V AAG+ +ESYWP LFAK+AEKR++ DL++NVG GGG  APV+ AAPA G  A AAAPA EE KK+EP 
Subjt:  MST-SELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEE-KKEEPK

Query:  DESDDDLGFSLFD
        +ESD DLGF LFD
Subjt:  DESDDDLGFSLFD

AT5G47700.2 60S acidic ribosomal protein family2.0e-3266.37Show/hide
Query:  MST-SELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEE-KKEEPK
        MST  ELAC+YA + L D+GIAITA+KIA++V AAG+ +ESYWP LFAK+AEKR++ DL++NVG GGG  APV+ AAPA G  A AAAPA EE KK+EP 
Subjt:  MST-SELACAYAALALHDDGIAITAEKIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEE-KKEEPK

Query:  DESDDDLGFSLFD
        +ESD DLGF LFD
Subjt:  DESDDDLGFSLFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAAGGTGGGAATCGGAAGAGTAGTTGCTTGGCTTGGCTTGGCTTTGTGTGTTTCGATTTCCCAGTTTCCAACGCAAATGCAAAGGGAAGGGGTCTGGTCAGGCAT
AGGCATAGGCATAGTGGCAGTGGCAGTGGCAGTGGCTGTGGGTGCGCCTCCAGTCCACGTACTCAGAGCCGTGGCGATCACCGTACGCGCATTTGACTCCAAGCAGCCTC
GCGGTATTCGTTGCATATCAGGCTCTACGCTAACCATGTCGACCAGTGAGCTCGCCTGCGCCTACGCCGCCCTGGCTCTTCACGACGATGGAATTGCCATCACTGCGGAG
AAGATTGCATCCGTAGTAGCAGCTGCAGGGCTCTGTGTGGAATCTTACTGGCCCAGCCTGTTTGCAAAGTTGGCAGAGAAGAGAGATATTGGGGACCTTCTTCTGAACGT
TGGCTGTGGTGGTGGCGCTGCGGCTCCCGTGTCTGTAGCTGCTCCTGCCGGTGGTGCTGCCGCTCCTGCTGCCGCTCCTGCCGTTGAGGAAAAGAAGGAGGAGCCAAAGG
ACGAGAGCGACGACGACTTGGGATTCAGCTTATTCGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATAAGGTGGGAATCGGAAGAGTAGTTGCTTGGCTTGGCTTGGCTTTGTGTGTTTCGATTTCCCAGTTTCCAACGCAAATGCAAAGGGAAGGGGTCTGGTCAGGCAT
AGGCATAGGCATAGTGGCAGTGGCAGTGGCAGTGGCTGTGGGTGCGCCTCCAGTCCACGTACTCAGAGCCGTGGCGATCACCGTACGCGCATTTGACTCCAAGCAGCCTC
GCGGTATTCGTTGCATATCAGGCTCTACGCTAACCATGTCGACCAGTGAGCTCGCCTGCGCCTACGCCGCCCTGGCTCTTCACGACGATGGAATTGCCATCACTGCGGAG
AAGATTGCATCCGTAGTAGCAGCTGCAGGGCTCTGTGTGGAATCTTACTGGCCCAGCCTGTTTGCAAAGTTGGCAGAGAAGAGAGATATTGGGGACCTTCTTCTGAACGT
TGGCTGTGGTGGTGGCGCTGCGGCTCCCGTGTCTGTAGCTGCTCCTGCCGGTGGTGCTGCCGCTCCTGCTGCCGCTCCTGCCGTTGAGGAAAAGAAGGAGGAGCCAAAGG
ACGAGAGCGACGACGACTTGGGATTCAGCTTATTCGATTAG
Protein sequenceShow/hide protein sequence
MDKVGIGRVVAWLGLALCVSISQFPTQMQREGVWSGIGIGIVAVAVAVAVGAPPVHVLRAVAITVRAFDSKQPRGIRCISGSTLTMSTSELACAYAALALHDDGIAITAE
KIASVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAAPAGGAAAPAAAPAVEEKKEEPKDESDDDLGFSLFD