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Spg002971 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002971
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionclassical arabinogalactan protein 4
Genome locationscaffold6:3645495..3646064
RNA-Seq ExpressionSpg002971
SyntenySpg002971
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576849.1 hypothetical protein SDJN03_24423, partial [Cucurbita argyrosperma subsp. sororia]8.0e-4168.95Show/hide
Query:  MASFAVLNALTVALLLTSAAANSPLPSPTPGPDSPPWKWIPTAEPPSSPPMAKAPPPQQPPTGSPPVTPPVPSPVPSSDAPTSPQPANPPMMSPAAPPPA
        MASFAVLN +T ALLL SAAANSPLPSP P P+SPPWKW P  E PSS      PP  +PP  SP V+PP  SPVPSSD PTSP  ANPP +SPAA PPA
Subjt:  MASFAVLNALTVALLLTSAAANSPLPSPTPGPDSPPWKWIPTAEPPSSPPMAKAPPPQQPPTGSPPVTPPVPSPVPSSDAPTSPQPANPPMMSPAAPPPA

Query:  EKSPSDAPSPSKMKPPAPAPSKMSPPPAKAPKSSAAP-GSPPSPNGGMEPPSPSPSEAPAVPKEGNGGGANRFAVGGYVAVGLVAVALIA
         KSP  APSPSK K PAPAPSKMSP PA+APKSSA P  SPP+PNG MEP  P+PS AP  PK  NGG ANRFA+ G VA GL+A ALIA
Subjt:  EKSPSDAPSPSKMKPPAPAPSKMSPPPAKAPKSSAAP-GSPPSPNGGMEPPSPSPSEAPAVPKEGNGGGANRFAVGGYVAVGLVAVALIA

KAG7014869.1 hypothetical protein SDJN02_22499, partial [Cucurbita argyrosperma subsp. argyrosperma]9.4e-4269.47Show/hide
Query:  MASFAVLNALTVALLLTSAAANSPLPSPTPGPDSPPWKWIPTAEPPSSPPMAKAPPPQQPPTGSPPVTPPVPSPVPSSDAPTSPQPANPPMMSPAAPPPA
        MASFAVLN +T ALLL SAAANSPLPSP P P+SPPWKW P  E PSS      PP  +PP  SP V+PP  SPVPSSD PTSP  ANPP +SPAA PPA
Subjt:  MASFAVLNALTVALLLTSAAANSPLPSPTPGPDSPPWKWIPTAEPPSSPPMAKAPPPQQPPTGSPPVTPPVPSPVPSSDAPTSPQPANPPMMSPAAPPPA

Query:  EKSPSDAPSPSKMKPPAPAPSKMSPPPAKAPKSSAAP-GSPPSPNGGMEPPSPSPSEAPAVPKEGNGGGANRFAVGGYVAVGLVAVALIA
         KSP  APSPSK K PAPAPSKMSP PA+APKSSA P  SPP+PNG MEP  P+PS AP  PK  NGG ANRFA+GG VA GL+A ALIA
Subjt:  EKSPSDAPSPSKMKPPAPAPSKMSPPPAKAPKSSAAP-GSPPSPNGGMEPPSPSPSEAPAVPKEGNGGGANRFAVGGYVAVGLVAVALIA

XP_008462882.1 PREDICTED: classical arabinogalactan protein 4 [Cucumis melo]1.0e-4066.67Show/hide
Query:  MASFAVLNALTVALLLTSAAANSPLPSPTPGPDSPPWKWIPTAEPPSSPPMAKAP-----PPQQPPTGSPPVTPPVPSPVPSSDAPTSPQPANPPMMSPA
        MAS  +LN LT+A LL SAAANSP PSP P  +SP WKW PT +PPSSPP A+ P     PP   PT SPP TPP  SPVPSS +PTSP  ANPP +SP 
Subjt:  MASFAVLNALTVALLLTSAAANSPLPSPTPGPDSPPWKWIPTAEPPSSPPMAKAP-----PPQQPPTGSPPVTPPVPSPVPSSDAPTSPQPANPPMMSPA

Query:  APPPAEKSPSDAPSPSKMKPPAPAPSKMSPPPAKAPKSSAAP-GSPPSPNGGMEPPSPSPSEAPAVPKEGNGGGANRFAVGGYVAVGLVAVALIA
        APPPA  SPS APSP+K K PAPAPSK+SP PAKAPKSS AP  SPPSPNG MEP  P+PSEAPA  KEGNG GANRFA+GG +A G +  A IA
Subjt:  APPPAEKSPSDAPSPSKMKPPAPAPSKMSPPPAKAPKSSAAP-GSPPSPNGGMEPPSPSPSEAPAVPKEGNGGGANRFAVGGYVAVGLVAVALIA

XP_022922559.1 extensin-like [Cucurbita moschata]1.4e-4068.42Show/hide
Query:  MASFAVLNALTVALLLTSAAANSPLPSPTPGPDSPPWKWIPTAEPPSSPPMAKAPPPQQPPTGSPPVTPPVPSPVPSSDAPTSPQPANPPMMSPAAPPPA
        MASFAVLN +T ALLL SA+ANSPLPSP P P+SPPWKW P  + PSS      PP  +PP  SP V+PP  SPVPSSD PTSP  ANPP +SPAA PPA
Subjt:  MASFAVLNALTVALLLTSAAANSPLPSPTPGPDSPPWKWIPTAEPPSSPPMAKAPPPQQPPTGSPPVTPPVPSPVPSSDAPTSPQPANPPMMSPAAPPPA

Query:  EKSPSDAPSPSKMKPPAPAPSKMSPPPAKAPKSSAAP-GSPPSPNGGMEPPSPSPSEAPAVPKEGNGGGANRFAVGGYVAVGLVAVALIA
         KSP  APSPSK K PAPAPSKMS  PA+APKSSAAP  SPP+PNG MEP  P+PS AP  PK  NGG ANRFA+GG VA GL+A ALIA
Subjt:  EKSPSDAPSPSKMKPPAPAPSKMSPPPAKAPKSSAAP-GSPPSPNGGMEPPSPSPSEAPAVPKEGNGGGANRFAVGGYVAVGLVAVALIA

XP_038877309.1 vegetative cell wall protein gp1-like [Benincasa hispida]2.5e-4269.79Show/hide
Query:  MASFAVLNALTVALLLTSAAANSPLPSPTPGPDSPPWKWIPTAEPPSSPPMAKAPPPQQP--PTGSPPVTPPVPSPVPSSDAPTSPQPANPPMMSPAAPP
        MAS  VL  LTVALLL SAAANSP+PSP PGP+SP WKW P+ EPPSSPPMA+ P    P  PT SPP TPP  SP+PSS APT P  ANPP +SP A P
Subjt:  MASFAVLNALTVALLLTSAAANSPLPSPTPGPDSPPWKWIPTAEPPSSPPMAKAPPPQQP--PTGSPPVTPPVPSPVPSSDAPTSPQPANPPMMSPAAPP

Query:  PAEKSPSDAPSPSKMKPPAPAPSKMSPPPAKAPKSSAAP-GSPPSPNGGMEPPSPSPSEAPAVPKEGNGGGANRFAVGGYVAVGLVAVALIA
        P  KSPS APSP+K K PAPAPSKMSP PAKAPKSS AP  SPPSPNG MEP  P+PS APA  K+ NGG ANRFA+GG VAVGL+  ALIA
Subjt:  PAEKSPSDAPSPSKMKPPAPAPSKMSPPPAKAPKSSAAP-GSPPSPNGGMEPPSPSPSEAPAVPKEGNGGGANRFAVGGYVAVGLVAVALIA

TrEMBL top hitse value%identityAlignment
A0A0A0L0Q7 Uncharacterized protein8.0e-3966.67Show/hide
Query:  MASFAVLNALTVALLLTSAAANSPLPSPTPGPDSPPWKWIPTAEPPSSPPMAKAP-----PPQQPPTGSPPVTPPVPSPVPSSDAPTSPQPANPPMMSPA
        MAS  +LN LT+A LL S AANSP PSP P  +SP WKW P+ EPPSSPP A+ P     PP   PT SPP TPP  SPVP+S APTSP  ANPP +SP 
Subjt:  MASFAVLNALTVALLLTSAAANSPLPSPTPGPDSPPWKWIPTAEPPSSPPMAKAP-----PPQQPPTGSPPVTPPVPSPVPSSDAPTSPQPANPPMMSPA

Query:  APPPAEKSPSDAPSPSKMKPPAPAPSKMSPPPAKAPKSSAAP-GSPPSPNGGMEPPSPSPSEAPAVPKEGNGGGANRFAVGGYVAVGLVAVALIA
        APPPA KSPS APSP+K K PAPAPSK SP PAKAPKSS AP  SPPSPNG MEP  P+PS APA  KEGNG GANRFA+GG +A GL+  A IA
Subjt:  APPPAEKSPSDAPSPSKMKPPAPAPSKMSPPPAKAPKSSAAP-GSPPSPNGGMEPPSPSPSEAPAVPKEGNGGGANRFAVGGYVAVGLVAVALIA

A0A1S3CHW9 classical arabinogalactan protein 45.0e-4166.67Show/hide
Query:  MASFAVLNALTVALLLTSAAANSPLPSPTPGPDSPPWKWIPTAEPPSSPPMAKAP-----PPQQPPTGSPPVTPPVPSPVPSSDAPTSPQPANPPMMSPA
        MAS  +LN LT+A LL SAAANSP PSP P  +SP WKW PT +PPSSPP A+ P     PP   PT SPP TPP  SPVPSS +PTSP  ANPP +SP 
Subjt:  MASFAVLNALTVALLLTSAAANSPLPSPTPGPDSPPWKWIPTAEPPSSPPMAKAP-----PPQQPPTGSPPVTPPVPSPVPSSDAPTSPQPANPPMMSPA

Query:  APPPAEKSPSDAPSPSKMKPPAPAPSKMSPPPAKAPKSSAAP-GSPPSPNGGMEPPSPSPSEAPAVPKEGNGGGANRFAVGGYVAVGLVAVALIA
        APPPA  SPS APSP+K K PAPAPSK+SP PAKAPKSS AP  SPPSPNG MEP  P+PSEAPA  KEGNG GANRFA+GG +A G +  A IA
Subjt:  APPPAEKSPSDAPSPSKMKPPAPAPSKMSPPPAKAPKSSAAP-GSPPSPNGGMEPPSPSPSEAPAVPKEGNGGGANRFAVGGYVAVGLVAVALIA

A0A5A7V3Q7 Classical arabinogalactan protein 45.0e-4166.67Show/hide
Query:  MASFAVLNALTVALLLTSAAANSPLPSPTPGPDSPPWKWIPTAEPPSSPPMAKAP-----PPQQPPTGSPPVTPPVPSPVPSSDAPTSPQPANPPMMSPA
        MAS  +LN LT+A LL SAAANSP PSP P  +SP WKW PT +PPSSPP A+ P     PP   PT SPP TPP  SPVPSS +PTSP  ANPP +SP 
Subjt:  MASFAVLNALTVALLLTSAAANSPLPSPTPGPDSPPWKWIPTAEPPSSPPMAKAP-----PPQQPPTGSPPVTPPVPSPVPSSDAPTSPQPANPPMMSPA

Query:  APPPAEKSPSDAPSPSKMKPPAPAPSKMSPPPAKAPKSSAAP-GSPPSPNGGMEPPSPSPSEAPAVPKEGNGGGANRFAVGGYVAVGLVAVALIA
        APPPA  SPS APSP+K K PAPAPSK+SP PAKAPKSS AP  SPPSPNG MEP  P+PSEAPA  KEGNG GANRFA+GG +A G +  A IA
Subjt:  APPPAEKSPSDAPSPSKMKPPAPAPSKMSPPPAKAPKSSAAP-GSPPSPNGGMEPPSPSPSEAPAVPKEGNGGGANRFAVGGYVAVGLVAVALIA

A0A6J1E3R0 extensin-like6.6e-4168.42Show/hide
Query:  MASFAVLNALTVALLLTSAAANSPLPSPTPGPDSPPWKWIPTAEPPSSPPMAKAPPPQQPPTGSPPVTPPVPSPVPSSDAPTSPQPANPPMMSPAAPPPA
        MASFAVLN +T ALLL SA+ANSPLPSP P P+SPPWKW P  + PSS      PP  +PP  SP V+PP  SPVPSSD PTSP  ANPP +SPAA PPA
Subjt:  MASFAVLNALTVALLLTSAAANSPLPSPTPGPDSPPWKWIPTAEPPSSPPMAKAPPPQQPPTGSPPVTPPVPSPVPSSDAPTSPQPANPPMMSPAAPPPA

Query:  EKSPSDAPSPSKMKPPAPAPSKMSPPPAKAPKSSAAP-GSPPSPNGGMEPPSPSPSEAPAVPKEGNGGGANRFAVGGYVAVGLVAVALIA
         KSP  APSPSK K PAPAPSKMS  PA+APKSSAAP  SPP+PNG MEP  P+PS AP  PK  NGG ANRFA+GG VA GL+A ALIA
Subjt:  EKSPSDAPSPSKMKPPAPAPSKMSPPPAKAPKSSAAP-GSPPSPNGGMEPPSPSPSEAPAVPKEGNGGGANRFAVGGYVAVGLVAVALIA

A0A6J1JCM0 extensin-like6.1e-3967.37Show/hide
Query:  MASFAVLNALTVALLLTSAAANSPLPSPTPGPDSPPWKWIPTAEPPSSPPMAKAPPPQQPPTGSPPVTPPVPSPVPSSDAPTSPQPANPPMMSPAAPPPA
        MASFAVLN +T ALLL SA+ANSPLPS  P P+S PWKW P  E PSS      PP  +PP  SP V+PP  SPVPSSD PTSP  ANPP +SPAA PPA
Subjt:  MASFAVLNALTVALLLTSAAANSPLPSPTPGPDSPPWKWIPTAEPPSSPPMAKAPPPQQPPTGSPPVTPPVPSPVPSSDAPTSPQPANPPMMSPAAPPPA

Query:  EKSPSDAPSPSKMKPPAPAPSKMSPPPAKAPKSSAAP-GSPPSPNGGMEPPSPSPSEAPAVPKEGNGGGANRFAVGGYVAVGLVAVALIA
         KSP  APSPSK K PAPAPSKMSP PA+APKSSAAP  SPP+PNG MEP  P+PS AP  PK  NGG ANRFA+   VA GL+A ALIA
Subjt:  EKSPSDAPSPSKMKPPAPAPSKMSPPPAKAPKSSAAP-GSPPSPNGGMEPPSPSPSEAPAVPKEGNGGGANRFAVGGYVAVGLVAVALIA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTTCGCCGTCCTGAATGCTCTAACGGTGGCGCTACTGCTGACCTCCGCCGCCGCCAACTCACCGCTGCCGTCTCCGACGCCAGGCCCCGACTCACCGCCGTG
GAAATGGATTCCCACTGCCGAGCCGCCGTCCTCTCCACCAATGGCAAAGGCACCGCCGCCGCAGCAGCCGCCCACTGGGTCTCCGCCGGTCACCCCACCAGTGCCGAGCC
CCGTTCCGTCATCCGACGCACCAACTTCGCCGCAGCCAGCAAACCCACCAATGATGTCGCCGGCCGCTCCGCCGCCGGCGGAGAAGAGTCCCAGTGATGCACCGTCGCCG
TCGAAAATGAAACCACCAGCTCCGGCTCCGTCGAAAATGAGTCCGCCGCCAGCCAAGGCGCCGAAATCTTCTGCAGCTCCGGGGAGTCCTCCGTCACCAAATGGAGGAAT
GGAGCCGCCGTCGCCGTCGCCGTCCGAAGCTCCGGCGGTGCCGAAGGAGGGCAACGGCGGAGGGGCAAACAGATTCGCCGTTGGTGGGTATGTTGCAGTTGGATTAGTGG
CTGTGGCTTTGATCGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCTTCGCCGTCCTGAATGCTCTAACGGTGGCGCTACTGCTGACCTCCGCCGCCGCCAACTCACCGCTGCCGTCTCCGACGCCAGGCCCCGACTCACCGCCGTG
GAAATGGATTCCCACTGCCGAGCCGCCGTCCTCTCCACCAATGGCAAAGGCACCGCCGCCGCAGCAGCCGCCCACTGGGTCTCCGCCGGTCACCCCACCAGTGCCGAGCC
CCGTTCCGTCATCCGACGCACCAACTTCGCCGCAGCCAGCAAACCCACCAATGATGTCGCCGGCCGCTCCGCCGCCGGCGGAGAAGAGTCCCAGTGATGCACCGTCGCCG
TCGAAAATGAAACCACCAGCTCCGGCTCCGTCGAAAATGAGTCCGCCGCCAGCCAAGGCGCCGAAATCTTCTGCAGCTCCGGGGAGTCCTCCGTCACCAAATGGAGGAAT
GGAGCCGCCGTCGCCGTCGCCGTCCGAAGCTCCGGCGGTGCCGAAGGAGGGCAACGGCGGAGGGGCAAACAGATTCGCCGTTGGTGGGTATGTTGCAGTTGGATTAGTGG
CTGTGGCTTTGATCGCCTAA
Protein sequenceShow/hide protein sequence
MASFAVLNALTVALLLTSAAANSPLPSPTPGPDSPPWKWIPTAEPPSSPPMAKAPPPQQPPTGSPPVTPPVPSPVPSSDAPTSPQPANPPMMSPAAPPPAEKSPSDAPSP
SKMKPPAPAPSKMSPPPAKAPKSSAAPGSPPSPNGGMEPPSPSPSEAPAVPKEGNGGGANRFAVGGYVAVGLVAVALIA