CuGenDBv2

Gene ID	Spg002977
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA_MISMATCH_REPAIR_2 domain-containing protein
Genome location	scaffold6:450898..453726
RNA-Seq Expression	Spg002977
Synteny	Spg002977
Gene Ontology terms	GO:0006298 - mismatch repair (biological process) GO:0045910 - negative regulation of DNA recombination (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0004519 - endonuclease activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0030983 - mismatched DNA binding (molecular function)
InterPro domains	IPR045076 - DNA mismatch repair MutS family

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022922840.1 uncharacterized protein LOC111430703 isoform X1 [Cucurbita moschata]

1.1e-21

90.62

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Query:  SAAGIGTILEPLSAVPLNDELQRARASVAKAEEDVLFMLTEKVWVKMELEDINKLIDCIIELDV
        SAAGIGT+LEPLSAVPLNDELQ+ARA+VAKAEEDVLFMLTEKVWVKM+ EDINKLI CIIELDV
Subjt:  SAAGIGTILEPLSAVPLNDELQRARASVAKAEEDVLFMLTEKVWVKMELEDINKLIDCIIELDV

XP_022922843.1 uncharacterized protein LOC111430703 isoform X3 [Cucurbita moschata]

1.1e-21

90.62

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Query:  SAAGIGTILEPLSAVPLNDELQRARASVAKAEEDVLFMLTEKVWVKMELEDINKLIDCIIELDV
        SAAGIGT+LEPLSAVPLNDELQ+ARA+VAKAEEDVLFMLTEKVWVKM+ EDINKLI CIIELDV
Subjt:  SAAGIGTILEPLSAVPLNDELQRARASVAKAEEDVLFMLTEKVWVKMELEDINKLIDCIIELDV

XP_022985050.1 uncharacterized protein LOC111483140 isoform X1 [Cucurbita maxima]

6.5e-22

92.19

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Query:  SAAGIGTILEPLSAVPLNDELQRARASVAKAEEDVLFMLTEKVWVKMELEDINKLIDCIIELDV
        SAAGIGTILEPLSAVPLNDELQ+ARA+VAKAEEDVLFMLTEKVWVKM+ EDINKLI CIIELDV
Subjt:  SAAGIGTILEPLSAVPLNDELQRARASVAKAEEDVLFMLTEKVWVKMELEDINKLIDCIIELDV

XP_022985052.1 uncharacterized protein LOC111483140 isoform X3 [Cucurbita maxima]

6.5e-22

92.19

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Query:  SAAGIGTILEPLSAVPLNDELQRARASVAKAEEDVLFMLTEKVWVKMELEDINKLIDCIIELDV
        SAAGIGTILEPLSAVPLNDELQ+ARA+VAKAEEDVLFMLTEKVWVKM+ EDINKLI CIIELDV
Subjt:  SAAGIGTILEPLSAVPLNDELQRARASVAKAEEDVLFMLTEKVWVKMELEDINKLIDCIIELDV

XP_038893999.1 endonuclease MutS2 isoform X5 [Benincasa hispida]

6.1e-20

81.69

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Query:  SAAGIGTILEPLSAVPLNDELQRARASVAKAEEDVLFMLTEKVWVKMELEDINKLIDCIIELDVNPRTDEQ
        S  G G ILEPLSAVPLNDELQ+ARASVAKAEEDVLFMLTEKVWVKM+ EDINKLI CIIELDV     EQ
Subjt:  SAAGIGTILEPLSAVPLNDELQRARASVAKAEEDVLFMLTEKVWVKMELEDINKLIDCIIELDVNPRTDEQ

TrEMBL top hits

e value

%identity

Alignment

A0A6J1E7X9 uncharacterized protein LOC111430703 isoform X3

5.4e-22

90.62

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Query:  SAAGIGTILEPLSAVPLNDELQRARASVAKAEEDVLFMLTEKVWVKMELEDINKLIDCIIELDV
        SAAGIGT+LEPLSAVPLNDELQ+ARA+VAKAEEDVLFMLTEKVWVKM+ EDINKLI CIIELDV
Subjt:  SAAGIGTILEPLSAVPLNDELQRARASVAKAEEDVLFMLTEKVWVKMELEDINKLIDCIIELDV

A0A6J1E9Y4 uncharacterized protein LOC111430703 isoform X1

5.4e-22

90.62

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Query:  SAAGIGTILEPLSAVPLNDELQRARASVAKAEEDVLFMLTEKVWVKMELEDINKLIDCIIELDV
        SAAGIGT+LEPLSAVPLNDELQ+ARA+VAKAEEDVLFMLTEKVWVKM+ EDINKLI CIIELDV
Subjt:  SAAGIGTILEPLSAVPLNDELQRARASVAKAEEDVLFMLTEKVWVKMELEDINKLIDCIIELDV

A0A6J1J3U0 uncharacterized protein LOC111483140 isoform X3

3.1e-22

92.19

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Query:  SAAGIGTILEPLSAVPLNDELQRARASVAKAEEDVLFMLTEKVWVKMELEDINKLIDCIIELDV
        SAAGIGTILEPLSAVPLNDELQ+ARA+VAKAEEDVLFMLTEKVWVKM+ EDINKLI CIIELDV
Subjt:  SAAGIGTILEPLSAVPLNDELQRARASVAKAEEDVLFMLTEKVWVKMELEDINKLIDCIIELDV

A0A6J1JA95 uncharacterized protein LOC111483140 isoform X1

3.1e-22

92.19

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Query:  SAAGIGTILEPLSAVPLNDELQRARASVAKAEEDVLFMLTEKVWVKMELEDINKLIDCIIELDV
        SAAGIGTILEPLSAVPLNDELQ+ARA+VAKAEEDVLFMLTEKVWVKM+ EDINKLI CIIELDV
Subjt:  SAAGIGTILEPLSAVPLNDELQRARASVAKAEEDVLFMLTEKVWVKMELEDINKLIDCIIELDV

A0A6J1JCF6 uncharacterized protein LOC111483140 isoform X4

5.5e-19

89.06

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Query:  SAAGIGTILEPLSAVPLNDELQRARASVAKAEEDVLFMLTEKVWVKMELEDINKLIDCIIELDV
        SAAGIGTILEPLSAVPLNDELQ+ARA+VAKAEEDVLFMLTEK  VKM+ EDINKLI CIIELDV
Subjt:  SAAGIGTILEPLSAVPLNDELQRARASVAKAEEDVLFMLTEKVWVKMELEDINKLIDCIIELDV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G54090.1 DNA mismatch repair protein MutS, type 2

7.4e-08

51.56

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Query:  SAAGIGTILEPLSAVPLNDELQRARASVAKAEEDVLFMLTEKVWVKMELEDINKLIDCIIELDV
        S +G GT  EP++AV +ND+LQ ARASVAKAE ++L MLTEK  ++  L  I  ++   I+LDV
Subjt:  SAAGIGTILEPLSAVPLNDELQRARASVAKAEEDVLFMLTEKVWVKMELEDINKLIDCIIELDV

Sequences

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CDS sequence

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ATGTATTGTTGTAGTGCTGCAGGGATTGGTACCATCTTAGAGCCACTCTCTGCTGTTCCTTTAAACGATGAGTTGCAACGAGCGAGGGCATCAGTGGCAAAAGCTGAGGA
AGATGTTCTCTTTATGCTAACTGAAAAAGTATGGGTGAAAATGGAACTTGAAGACATTAATAAACTTATTGACTGTATAATTGAATTAGATGTGAATCCCAGGACTGACG
AACAACTTTTTCAATCCGGCGAGATTTGCGGAATCCCCCCACTTTCGGATTTGCTTGATTTGGAAGTTAAGAAGAGTGAGAATTTGGGATTTGAAAATTCTAAATTGACT
GTGGCCCCAAAGGAAATAAATTCAGCTCCTAAAAATGAAGATTTTATTCCTGATTTAGCAATTTCAAATGATTTATCCTTTTTGCCGATTGATGCTCCAAAATTATCAAT
ACTTAGAGATCATTTGCAATTGCCAGCATACTCCATTAAAGGCACTAAGATTCTGGAATCTGATACAGAAGCATACATAACAAGTCCAACCAATGGAGATTCGCACCATA
CCTCGGCTTGTGACCTCGCCTCACCGTGCAATTTAGACCTTGCAATATTTGATGAAATACCTTTTACCGGGTCAGAACAACTTCCTCCCACATACCATCGTCTTCCCCCA
TTATTCCCTCTCCCACAAAAGAAGTCACCCCTTTACAGAAACAAAATTGCTCCCCACCTGAACCATCATCCCTTTCCCTTCCATCCTATCTCCACCACCTAG

mRNA sequence

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Protein sequence

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MYCCSAAGIGTILEPLSAVPLNDELQRARASVAKAEEDVLFMLTEKVWVKMELEDINKLIDCIIELDVNPRTDEQLFQSGEICGIPPLSDLLDLEVKKSENLGFENSKLT
VAPKEINSAPKNEDFIPDLAISNDLSFLPIDAPKLSILRDHLQLPAYSIKGTKILESDTEAYITSPTNGDSHHTSACDLASPCNLDLAIFDEIPFTGSEQLPPTYHRLPP
LFPLPQKKSPLYRNKIAPHLNHHPFPFHPISTT

Spg002977 (gene) of Sponge gourd (cylindrica) v1 genome