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Spg003010 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003010
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 reverse transcriptase-like
Genome locationscaffold12:37434945..37435825
RNA-Seq ExpressionSpg003010
SyntenySpg003010
Gene Ontology termsGO:0006139 - nucleobase-containing compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW36866.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]3.3e-2234.12Show/hide
Query:  KTSIIGINIDKLEMDDWAKNLGCQCEALPMNYLGFPMGA-----------PSSAIKAMEKISRDFIWNGGNYKLGSNLVKWEWTSLPLSHGGLGVGALRQ
        K++I GIN+++  +   A+ L C+    P+ YLG P+G            P+S    +EK+ RDF+W+G       +LV W+    P S GGLG G +  
Subjt:  KTSIIGINIDKLEMDDWAKNLGCQCEALPMNYLGFPMGA-----------PSSAIKAMEKISRDFIWNGGNYKLGSNLVKWEWTSLPLSHGGLGVGALRQ

Query:  RNIALITKWLWRFSQEKEALWRKVVASIYETKPR-WDLGN-------CTWNLRLCRRLFDRELPSWAGLV
        RN+AL+ KWLWR+ +E  ALW +V+ SIY +    WD+ N       C W  +    ++ +  PS+   V
Subjt:  RNIALITKWLWRFSQEKEALWRKVVASIYETKPR-WDLGN-------CTWNLRLCRRLFDRELPSWAGLV

RVW39501.1 microtubule-associated protein AIR9 [Vitis vinifera]5.1e-2332.47Show/hide
Query:  KTSIIGINIDKLEMDDWAKNLGCQCEALPMNYLGFPMGAPSSA-------------IKAMEKISRDFIWNGGNYKLGSNLVKWEWTSLPLSHGGLGVGAL
        K+SI GIN+D+  +   A+ L C+    P+ YLG P+G    A                +E++ RDF+W+G       +LV+W+    P + GGLG+G +
Subjt:  KTSIIGINIDKLEMDDWAKNLGCQCEALPMNYLGFPMGAPSSA-------------IKAMEKISRDFIWNGGNYKLGSNLVKWEWTSLPLSHGGLGVGAL

Query:  RQRNIALITKWLWRFSQEKEALWRKVVASIYETKPR-WDLGNC--------------------TWNLRLCRRLFDRELPSWAGLVNILNDIHLS
          RN+AL+ KWLWR+ +E  ALW +V+ SIY +    WD                         WNL   R L D E+    GL+  ++D++LS
Subjt:  RQRNIALITKWLWRFSQEKEALWRKVVASIYETKPR-WDLGNC--------------------TWNLRLCRRLFDRELPSWAGLVNILNDIHLS

RVW90069.1 putative ribonuclease H protein [Vitis vinifera]4.8e-2129.72Show/hide
Query:  KTSIIGINIDKLEMDDWAKNLGCQCEALPMNYLGFPMGA-----------PSSAIKAMEKISRDFIWNGGNYKLGSNLVKWEWTSLPLSHGGLGVGALRQ
        K++I GIN+D+  +   A+ L C+    P+ YLG P+G            P+S    +E++ RDF+W+G       +LV+W+    P   GGLG G +  
Subjt:  KTSIIGINIDKLEMDDWAKNLGCQCEALPMNYLGFPMGA-----------PSSAIKAMEKISRDFIWNGGNYKLGSNLVKWEWTSLPLSHGGLGVGALRQ

Query:  RNIALITKWLWRFSQEKEALWRKVVASIYETKPR--------WD--------LGN-------------------------CTWNLRLCRRLFDRELPSWA
        RN+A + KWLWR+ +E  ALW +++ SIY +           W+        LG+                          +WNL   R L D E+    
Subjt:  RNIALITKWLWRFSQEKEALWRKVVASIYETKPR--------WD--------LGN-------------------------CTWNLRLCRRLFDRELPSWA

Query:  GLVNILNDIHLS
        GL+  L+ +HLS
Subjt:  GLVNILNDIHLS

RVX20623.1 putative ribonuclease H protein [Vitis vinifera]4.3e-2243.41Show/hide
Query:  INIDKLE---------MDDWAKNLGCQCEALPMNYLGFPMGAPSSAI-KAMEKISRDFIWNGGNYKLGSNLVKWEWTSLPLSHGGLGVGALRQRNIALIT
        IN++K E         MDD A+  GC   +LP  YLG P+GAP + + + +EKI RDF+W GGN +   +LV+WE   L  + GGLGV +L   N  L+ 
Subjt:  INIDKLE---------MDDWAKNLGCQCEALPMNYLGFPMGAPSSAI-KAMEKISRDFIWNGGNYKLGSNLVKWEWTSLPLSHGGLGVGALRQRNIALIT

Query:  KWLWRFSQEKEALWRKVVASIY-ETKPRW
        KW WRF+ E+EALW +V+   Y E +  W
Subjt:  KWLWRFSQEKEALWRKVVASIY-ETKPRW

XP_022158566.1 uncharacterized protein LOC111025019 [Momordica charantia]1.9e-2545.19Show/hide
Query:  MAKTSIIGINIDKLEMDDWAKNLGCQCEALPMNYLGFPMG---------------APSSAIKAMEKISRDFIWNGGNYKLGSNLVKWEWTSLPLSHGGLG
        +AKTS+IGINI + E       +GC+ E +   YLG P+G               AP S  K M KI RD  W+G       NLVKW+ +SLP+  GGLG
Subjt:  MAKTSIIGINIDKLEMDDWAKNLGCQCEALPMNYLGFPMG---------------APSSAIKAMEKISRDFIWNGGNYKLGSNLVKWEWTSLPLSHGGLG

Query:  VGALRQRNIALITKWLWRFSQEKEALWRKVVASIY
        +GA   +N AL+ KWLW F++E+ ALWR+V+ASIY
Subjt:  VGALRQRNIALITKWLWRFSQEKEALWRKVVASIY

TrEMBL top hitse value%identityAlignment
A0A438DN42 LINE-1 retrotransposable element ORF2 protein1.6e-2234.12Show/hide
Query:  KTSIIGINIDKLEMDDWAKNLGCQCEALPMNYLGFPMGA-----------PSSAIKAMEKISRDFIWNGGNYKLGSNLVKWEWTSLPLSHGGLGVGALRQ
        K++I GIN+++  +   A+ L C+    P+ YLG P+G            P+S    +EK+ RDF+W+G       +LV W+    P S GGLG G +  
Subjt:  KTSIIGINIDKLEMDDWAKNLGCQCEALPMNYLGFPMGA-----------PSSAIKAMEKISRDFIWNGGNYKLGSNLVKWEWTSLPLSHGGLGVGALRQ

Query:  RNIALITKWLWRFSQEKEALWRKVVASIYETKPR-WDLGN-------CTWNLRLCRRLFDRELPSWAGLV
        RN+AL+ KWLWR+ +E  ALW +V+ SIY +    WD+ N       C W  +    ++ +  PS+   V
Subjt:  RNIALITKWLWRFSQEKEALWRKVVASIYETKPR-WDLGN-------CTWNLRLCRRLFDRELPSWAGLV

A0A438DVJ6 Microtubule-associated protein AIR92.5e-2332.47Show/hide
Query:  KTSIIGINIDKLEMDDWAKNLGCQCEALPMNYLGFPMGAPSSA-------------IKAMEKISRDFIWNGGNYKLGSNLVKWEWTSLPLSHGGLGVGAL
        K+SI GIN+D+  +   A+ L C+    P+ YLG P+G    A                +E++ RDF+W+G       +LV+W+    P + GGLG+G +
Subjt:  KTSIIGINIDKLEMDDWAKNLGCQCEALPMNYLGFPMGAPSSA-------------IKAMEKISRDFIWNGGNYKLGSNLVKWEWTSLPLSHGGLGVGAL

Query:  RQRNIALITKWLWRFSQEKEALWRKVVASIYETKPR-WDLGNC--------------------TWNLRLCRRLFDRELPSWAGLVNILNDIHLS
          RN+AL+ KWLWR+ +E  ALW +V+ SIY +    WD                         WNL   R L D E+    GL+  ++D++LS
Subjt:  RQRNIALITKWLWRFSQEKEALWRKVVASIYETKPR-WDLGNC--------------------TWNLRLCRRLFDRELPSWAGLVNILNDIHLS

A0A438I024 Putative ribonuclease H protein2.3e-2129.72Show/hide
Query:  KTSIIGINIDKLEMDDWAKNLGCQCEALPMNYLGFPMGA-----------PSSAIKAMEKISRDFIWNGGNYKLGSNLVKWEWTSLPLSHGGLGVGALRQ
        K++I GIN+D+  +   A+ L C+    P+ YLG P+G            P+S    +E++ RDF+W+G       +LV+W+    P   GGLG G +  
Subjt:  KTSIIGINIDKLEMDDWAKNLGCQCEALPMNYLGFPMGA-----------PSSAIKAMEKISRDFIWNGGNYKLGSNLVKWEWTSLPLSHGGLGVGALRQ

Query:  RNIALITKWLWRFSQEKEALWRKVVASIYETKPR--------WD--------LGN-------------------------CTWNLRLCRRLFDRELPSWA
        RN+A + KWLWR+ +E  ALW +++ SIY +           W+        LG+                          +WNL   R L D E+    
Subjt:  RNIALITKWLWRFSQEKEALWRKVVASIYETKPR--------WD--------LGN-------------------------CTWNLRLCRRLFDRELPSWA

Query:  GLVNILNDIHLS
        GL+  L+ +HLS
Subjt:  GLVNILNDIHLS

A0A438KHD8 Putative ribonuclease H protein2.1e-2243.41Show/hide
Query:  INIDKLE---------MDDWAKNLGCQCEALPMNYLGFPMGAPSSAI-KAMEKISRDFIWNGGNYKLGSNLVKWEWTSLPLSHGGLGVGALRQRNIALIT
        IN++K E         MDD A+  GC   +LP  YLG P+GAP + + + +EKI RDF+W GGN +   +LV+WE   L  + GGLGV +L   N  L+ 
Subjt:  INIDKLE---------MDDWAKNLGCQCEALPMNYLGFPMGAPSSAI-KAMEKISRDFIWNGGNYKLGSNLVKWEWTSLPLSHGGLGVGALRQRNIALIT

Query:  KWLWRFSQEKEALWRKVVASIY-ETKPRW
        KW WRF+ E+EALW +V+   Y E +  W
Subjt:  KWLWRFSQEKEALWRKVVASIY-ETKPRW

A0A6J1E196 uncharacterized protein LOC1110250199.1e-2645.19Show/hide
Query:  MAKTSIIGINIDKLEMDDWAKNLGCQCEALPMNYLGFPMG---------------APSSAIKAMEKISRDFIWNGGNYKLGSNLVKWEWTSLPLSHGGLG
        +AKTS+IGINI + E       +GC+ E +   YLG P+G               AP S  K M KI RD  W+G       NLVKW+ +SLP+  GGLG
Subjt:  MAKTSIIGINIDKLEMDDWAKNLGCQCEALPMNYLGFPMG---------------APSSAIKAMEKISRDFIWNGGNYKLGSNLVKWEWTSLPLSHGGLG

Query:  VGALRQRNIALITKWLWRFSQEKEALWRKVVASIY
        +GA   +N AL+ KWLW F++E+ ALWR+V+ASIY
Subjt:  VGALRQRNIALITKWLWRFSQEKEALWRKVVASIY

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.6e-1136.08Show/hide
Query:  PSSAIKAMEKISRDFIWNGGNYKLGSNLVKWEWTSLPLSHGGLGVGALRQRNIALITKWLWRFSQEKEALWRKVVASIYET----KPRWDLGNCTWN
        P S +  ++++SR F+W     K   +LVKW     P   GGLGV A +  N ALI+K  WR  QEK +LW  V+   Y        RW +   +W+
Subjt:  PSSAIKAMEKISRDFIWNGGNYKLGSNLVKWEWTSLPLSHGGLGVGALRQRNIALITKWLWRFSQEKEALWRKVVASIYET----KPRWDLGNCTWN

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAAGACATCAATTATCGGGATTAACATAGACAAGTTAGAAATGGATGATTGGGCAAAGAACCTCGGATGTCAATGTGAAGCCCTCCCTATGAATTACCTTGGCTT
TCCTATGGGTGCTCCATCCTCGGCCATAAAGGCCATGGAGAAAATCAGTAGAGATTTCATCTGGAATGGAGGAAATTATAAACTTGGCAGCAACCTTGTGAAATGGGAAT
GGACCTCCCTCCCTTTGAGTCATGGAGGTTTGGGGGTGGGGGCTCTTCGACAGAGGAATATAGCTCTCATCACCAAGTGGCTTTGGAGATTTTCCCAAGAGAAAGAAGCC
TTGTGGAGGAAAGTTGTTGCTAGTATATATGAAACGAAGCCACGCTGGGATTTGGGAAACTGCACTTGGAACCTTAGACTTTGCAGACGTTTGTTTGACAGGGAGCTTCC
TAGCTGGGCTGGTTTAGTGAATATCCTGAATGACATTCACTTGTCAAATGATCAGGACAAGATTAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTAAGACATCAATTATCGGGATTAACATAGACAAGTTAGAAATGGATGATTGGGCAAAGAACCTCGGATGTCAATGTGAAGCCCTCCCTATGAATTACCTTGGCTT
TCCTATGGGTGCTCCATCCTCGGCCATAAAGGCCATGGAGAAAATCAGTAGAGATTTCATCTGGAATGGAGGAAATTATAAACTTGGCAGCAACCTTGTGAAATGGGAAT
GGACCTCCCTCCCTTTGAGTCATGGAGGTTTGGGGGTGGGGGCTCTTCGACAGAGGAATATAGCTCTCATCACCAAGTGGCTTTGGAGATTTTCCCAAGAGAAAGAAGCC
TTGTGGAGGAAAGTTGTTGCTAGTATATATGAAACGAAGCCACGCTGGGATTTGGGAAACTGCACTTGGAACCTTAGACTTTGCAGACGTTTGTTTGACAGGGAGCTTCC
TAGCTGGGCTGGTTTAGTGAATATCCTGAATGACATTCACTTGTCAAATGATCAGGACAAGATTAGATAG
Protein sequenceShow/hide protein sequence
MAKTSIIGINIDKLEMDDWAKNLGCQCEALPMNYLGFPMGAPSSAIKAMEKISRDFIWNGGNYKLGSNLVKWEWTSLPLSHGGLGVGALRQRNIALITKWLWRFSQEKEA
LWRKVVASIYETKPRWDLGNCTWNLRLCRRLFDRELPSWAGLVNILNDIHLSNDQDKIR