; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg003041 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003041
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S13
Genome locationscaffold12:38376526..38381024
RNA-Seq ExpressionSpg003041
SyntenySpg003041
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR000589 - Ribosomal protein S15
IPR009068 - S15/NS1, RNA-binding
IPR012606 - Ribosomal protein S13/S15, N-terminal
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER35032.1 40S ribosomal protein S13 [Striga asiatica]1.3e-5969.31Show/hide
Query:  RIRATQSSTALDDNHGSYAQSREGYFRLCIALQEDAAELAQDLFHGCKYSIDSLICLPD-----GECLREVEDNICKFAKKGLTPSQIGVILRDSHGIAQ
        ++ AT S T LD+   S++ + E  +    A    AA + +    G   S  +L              ++VE+NICKFAKKGLTPSQIGVILRDSHGIAQ
Subjt:  RIRATQSSTALDDNHGSYAQSREGYFRLCIALQEDAAELAQDLFHGCKYSIDSLICLPD-----GECLREVEDNICKFAKKGLTPSQIGVILRDSHGIAQ

Query:  VKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        VKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  VKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

KAG4173755.1 hypothetical protein ERO13_A11G080300v2 [Gossypium hirsutum]1.1e-5892.31Show/hide
Query:  ICLPDGECLREVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESR
        ICL   +  ++VEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESR
Subjt:  ICLPDGECLREVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESR

Query:  IHRLARYYKKTKKLPPVWKYESTTASTLVA
         HRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  IHRLARYYKKTKKLPPVWKYESTTASTLVA

XP_016509568.1 PREDICTED: 40S ribosomal protein S13-like, partial [Nicotiana tabacum]1.5e-5896.75Show/hide
Query:  CLREVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY
        C  +VEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARY
Subjt:  CLREVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY

Query:  YKKTKKLPPVWKYESTTASTLVA
        YKKTKKLPPVWKYESTTASTLVA
Subjt:  YKKTKKLPPVWKYESTTASTLVA

XP_030535484.1 40S ribosomal protein S13 [Rhodamnia argentea]1.9e-5898.35Show/hide
Query:  REVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK
        ++VEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK
Subjt:  REVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK

Query:  KTKKLPPVWKYESTTASTLVA
        KTKKLPPVWKYESTTASTLVA
Subjt:  KTKKLPPVWKYESTTASTLVA

XP_040937940.1 40S ribosomal protein S13 [Gossypium hirsutum]1.1e-5892.31Show/hide
Query:  ICLPDGECLREVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESR
        ICL   +  ++VEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESR
Subjt:  ICLPDGECLREVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESR

Query:  IHRLARYYKKTKKLPPVWKYESTTASTLVA
         HRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  IHRLARYYKKTKKLPPVWKYESTTASTLVA

TrEMBL top hitse value%identityAlignment
A0A1S4D890 30S ribosomal protein S15, chloroplastic7.1e-5996.75Show/hide
Query:  CLREVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY
        C  +VEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARY
Subjt:  CLREVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY

Query:  YKKTKKLPPVWKYESTTASTLVA
        YKKTKKLPPVWKYESTTASTLVA
Subjt:  YKKTKKLPPVWKYESTTASTLVA

A0A5A7PRC7 40S ribosomal protein S136.4e-6069.31Show/hide
Query:  RIRATQSSTALDDNHGSYAQSREGYFRLCIALQEDAAELAQDLFHGCKYSIDSLICLPD-----GECLREVEDNICKFAKKGLTPSQIGVILRDSHGIAQ
        ++ AT S T LD+   S++ + E  +    A    AA + +    G   S  +L              ++VE+NICKFAKKGLTPSQIGVILRDSHGIAQ
Subjt:  RIRATQSSTALDDNHGSYAQSREGYFRLCIALQEDAAELAQDLFHGCKYSIDSLICLPD-----GECLREVEDNICKFAKKGLTPSQIGVILRDSHGIAQ

Query:  VKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        VKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  VKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

A0A7J6HLU1 Ribosomal_S13_N domain-containing protein1.2e-5897.52Show/hide
Query:  REVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK
        ++VEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILR+LKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK
Subjt:  REVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK

Query:  KTKKLPPVWKYESTTASTLVA
        KTKKLPPVWKYESTTASTLVA
Subjt:  KTKKLPPVWKYESTTASTLVA

A0A803R0Y8 Uncharacterized protein1.2e-5897.52Show/hide
Query:  REVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK
        ++VEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILR+LKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK
Subjt:  REVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK

Query:  KTKKLPPVWKYESTTASTLVA
        KTKKLPPVWKYESTTASTLVA
Subjt:  KTKKLPPVWKYESTTASTLVA

A0A803R0Z7 Uncharacterized protein1.2e-5897.52Show/hide
Query:  REVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK
        ++VEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILR+LKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK
Subjt:  REVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK

Query:  KTKKLPPVWKYESTTASTLVA
        KTKKLPPVWKYESTTASTLVA
Subjt:  KTKKLPPVWKYESTTASTLVA

SwissProt top hitse value%identityAlignment
P46298 40S ribosomal protein S138.9e-5995.04Show/hide
Query:  REVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK
        ++V++ ICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER RKDKDSKFRLILVESRIHRLARYYK
Subjt:  REVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK

Query:  KTKKLPPVWKYESTTASTLVA
        KTKKLPPVWKYESTTASTLVA
Subjt:  KTKKLPPVWKYESTTASTLVA

P59223 40S ribosomal protein S13-15.2e-5994.21Show/hide
Query:  REVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK
        ++V+++ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYK
Subjt:  REVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK

Query:  KTKKLPPVWKYESTTASTLVA
        KTKKLPPVWKYESTTASTLVA
Subjt:  KTKKLPPVWKYESTTASTLVA

P59224 40S ribosomal protein S13-25.2e-5994.21Show/hide
Query:  REVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK
        ++V+++ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYK
Subjt:  REVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK

Query:  KTKKLPPVWKYESTTASTLVA
        KTKKLPPVWKYESTTASTLVA
Subjt:  KTKKLPPVWKYESTTASTLVA

P62302 40S ribosomal protein S132.8e-6096.69Show/hide
Query:  REVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK
        ++VE+NICKFAKKGLTPSQIGVILRDSHGIAQV SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK
Subjt:  REVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK

Query:  KTKKLPPVWKYESTTASTLVA
        KTKKLPPVWKYESTTASTLVA
Subjt:  KTKKLPPVWKYESTTASTLVA

Q69UI2 40S ribosomal protein S13-13.6e-5287.5Show/hide
Query:  EVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKK
        +VE+ I K AKKG  PSQIGV+LRD HGI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYK+
Subjt:  EVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKK

Query:  TKKLPPVWKYESTTASTLVA
        TKKLPP WKYESTTASTLVA
Subjt:  TKKLPPVWKYESTTASTLVA

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S153.7e-6094.21Show/hide
Query:  REVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK
        ++V+++ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYK
Subjt:  REVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK

Query:  KTKKLPPVWKYESTTASTLVA
        KTKKLPPVWKYESTTASTLVA
Subjt:  KTKKLPPVWKYESTTASTLVA

AT4G00100.1 ribosomal protein S13A3.7e-6094.21Show/hide
Query:  REVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK
        ++V+++ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYK
Subjt:  REVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK

Query:  KTKKLPPVWKYESTTASTLVA
        KTKKLPPVWKYESTTASTLVA
Subjt:  KTKKLPPVWKYESTTASTLVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACCCTTTTGGGAGTGGGCCTCTAAGACCATACTCAGTCCCCTAAGGGGTTGGCCATACGAGTCTTGGCTGACCCCTATAGGAGTTAGCCTCATGGCCATGGTTGA
CCCTTCATGGGGTCTTACGGTCTTGATGGACCCCTCTAGGGATCGACTTCCATCACCTTTACTTGATACGTTTTGCCTCATGGTCTTTTGGACACTAGGGAGCGAGCGGG
AGGAGAGGACTCGACCCACCGAAGTGGCCCGAGGCCGAGGCCATGGTATTAGGCCTTGGCCCAATTCCTTTTGGCCTACCTCTCCTCTGGGGTCCGTTTCCTGGTCGTGT
CTTTGGATTGGTGTTGTGTTGTCCTCGTCGGCTCTTTACATCTCGGAGTCTCAGGGTTTTGGTTATTCGGCCGTCGCGGAAGAGCAACTCTTATCGAACTCCAGAATTAG
GGCAACACAGAGTTCCACTGCCTTAGACGATAACCATGGGTCGTATGCACAGTCGAGGGAAGGGTATTTCCGCCTCTGCATTGCCCTACAAGAGGACGCCGCCGAGTTGG
CTCAAGATCTCTTCCACGGATGTAAGTATTCTATCGATTCCCTCATCTGTTTGCCTGACGGTGAATGCTTACGGGAAGTTGAAGATAATATCTGCAAGTTTGCGAAGAAG
GGCTTAACCCCTTCTCAGATTGGTGTCATTCTTCGTGATTCTCACGGTATCGCTCAGGTCAAAAGTGTTACTGGAAGCAAAATTTTGCGTATTCTTAAGGCCCATGGGTT
GGCACCGGAGATTCCAGAGGATCTTTACCACTTAATTAAGAAAGCAGTCTCCATCCGTAAGCATTTGGAGAGGAACAGGAAGGACAAGGACTCCAAGTTCAGGTTGATTC
TTGTGGAGAGCAGAATTCACAGGCTTGCTCGCTACTACAAGAAAACCAAGAAGCTTCCACCAGTTTGGAAATACGAGTCAACAACTGCCAGCACCCTGGTTGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCACCCTTTTGGGAGTGGGCCTCTAAGACCATACTCAGTCCCCTAAGGGGTTGGCCATACGAGTCTTGGCTGACCCCTATAGGAGTTAGCCTCATGGCCATGGTTGA
CCCTTCATGGGGTCTTACGGTCTTGATGGACCCCTCTAGGGATCGACTTCCATCACCTTTACTTGATACGTTTTGCCTCATGGTCTTTTGGACACTAGGGAGCGAGCGGG
AGGAGAGGACTCGACCCACCGAAGTGGCCCGAGGCCGAGGCCATGGTATTAGGCCTTGGCCCAATTCCTTTTGGCCTACCTCTCCTCTGGGGTCCGTTTCCTGGTCGTGT
CTTTGGATTGGTGTTGTGTTGTCCTCGTCGGCTCTTTACATCTCGGAGTCTCAGGGTTTTGGTTATTCGGCCGTCGCGGAAGAGCAACTCTTATCGAACTCCAGAATTAG
GGCAACACAGAGTTCCACTGCCTTAGACGATAACCATGGGTCGTATGCACAGTCGAGGGAAGGGTATTTCCGCCTCTGCATTGCCCTACAAGAGGACGCCGCCGAGTTGG
CTCAAGATCTCTTCCACGGATGTAAGTATTCTATCGATTCCCTCATCTGTTTGCCTGACGGTGAATGCTTACGGGAAGTTGAAGATAATATCTGCAAGTTTGCGAAGAAG
GGCTTAACCCCTTCTCAGATTGGTGTCATTCTTCGTGATTCTCACGGTATCGCTCAGGTCAAAAGTGTTACTGGAAGCAAAATTTTGCGTATTCTTAAGGCCCATGGGTT
GGCACCGGAGATTCCAGAGGATCTTTACCACTTAATTAAGAAAGCAGTCTCCATCCGTAAGCATTTGGAGAGGAACAGGAAGGACAAGGACTCCAAGTTCAGGTTGATTC
TTGTGGAGAGCAGAATTCACAGGCTTGCTCGCTACTACAAGAAAACCAAGAAGCTTCCACCAGTTTGGAAATACGAGTCAACAACTGCCAGCACCCTGGTTGCATAA
Protein sequenceShow/hide protein sequence
MAPFWEWASKTILSPLRGWPYESWLTPIGVSLMAMVDPSWGLTVLMDPSRDRLPSPLLDTFCLMVFWTLGSEREERTRPTEVARGRGHGIRPWPNSFWPTSPLGSVSWSC
LWIGVVLSSSALYISESQGFGYSAVAEEQLLSNSRIRATQSSTALDDNHGSYAQSREGYFRLCIALQEDAAELAQDLFHGCKYSIDSLICLPDGECLREVEDNICKFAKK
GLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA