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Spg003087 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003087
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold12:37651021..37653227
RNA-Seq ExpressionSpg003087
SyntenySpg003087
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8774880.1 hypothetical protein D1007_52690 [Hordeum vulgare]1.1e-0528.67Show/hide
Query:  ISVNVDAAWVSSPPSTRIGAICRDQRGKIRRASARYIDVVYNAPLAELKAILEGLNLAKKIECGKITIKFDCSQT-------------------------
        + VNVDA++V    +   GAI RD+ G    A+ +YI  V +A  AE  A+  GL LA  I C K+  + DC                            
Subjt:  ISVNVDAAWVSSPPSTRIGAICRDQRGKIRRASARYIDVVYNAPLAELKAILEGLNLAKKIECGKITIKFDCSQT-------------------------

Query:  -----VNFVYTPRKENRVADSIAKEARRIGINESWICFIPEWIVNVVEYD
             + F    R+ N+VAD++AKEA +   + +W    P +I +++  D
Subjt:  -----VNFVYTPRKENRVADSIAKEARRIGINESWICFIPEWIVNVVEYD

KAE8778841.1 hypothetical protein D1007_48162 [Hordeum vulgare]8.1e-0628.67Show/hide
Query:  ISVNVDAAWVSSPPSTRIGAICRDQRGKIRRASARYIDVVYNAPLAELKAILEGLNLAKKIECGKITIKFDCSQT-------------------------
        + VNVDA++V    +   GAI RD+ G    A+ +YI  V +A  AE  A+  GL LA  I C K+  + DC                            
Subjt:  ISVNVDAAWVSSPPSTRIGAICRDQRGKIRRASARYIDVVYNAPLAELKAILEGLNLAKKIECGKITIKFDCSQT-------------------------

Query:  -----VNFVYTPRKENRVADSIAKEARRIGINESWICFIPEWIVNVVEYD
             + F    R+ N+VAD++AKEA +   + +W    P +I +++  D
Subjt:  -----VNFVYTPRKENRVADSIAKEARRIGINESWICFIPEWIVNVVEYD

KAF2906274.1 hypothetical protein DAI22_12g007450 [Oryza sativa Japonica Group]1.4e-0525.33Show/hide
Query:  ISVNVDAAWVSSPPSTRIGAICRDQRGKIRRASARYIDVVYNAPLAELKAILEGLNLAKKIECGKITIKFDCSQTVNFV---------------------
        + VNVDA +        +G++ RD  G +  A+  ++  + +AP+AE  A+ EGL LA++I C ++ I+ DC + V  +                     
Subjt:  ISVNVDAAWVSSPPSTRIGAICRDQRGKIRRASARYIDVVYNAPLAELKAILEGLNLAKKIECGKITIKFDCSQTVNFV---------------------

Query:  ---------YTPRKENRVADSIAKEARRIGINESWICFIPEWIVNVVEYD
                 +  R+ N+VA ++A+ AR    N +W+   P +I++ +  D
Subjt:  ---------YTPRKENRVADSIAKEARRIGINESWICFIPEWIVNVVEYD

XP_024177957.1 uncharacterized protein LOC112183874 [Rosa chinensis]1.8e-0525.33Show/hide
Query:  ISVNVDAAWVSSPPSTRIGAICRDQRGKIRRASARYIDVVYNAPLAELKAILEGLNLAKKIECGKITIKFDCSQTVNFV---------------------
        + +NVD A++   P   IG I RD   +   A  + +  V +    EL AI  G++L K+++  + TI+ DC Q V  +                     
Subjt:  ISVNVDAAWVSSPPSTRIGAICRDQRGKIRRASARYIDVVYNAPLAELKAILEGLNLAKKIECGKITIKFDCSQTVNFV---------------------

Query:  ---------YTPRKENRVADSIAKEARRIGINESWICFIPEWIVNVVEYD
                 + PR  N+VA  +A  A   G +E+W   +P  I+++V+ +
Subjt:  ---------YTPRKENRVADSIAKEARRIGINESWICFIPEWIVNVVEYD

XP_038902513.1 uncharacterized protein LOC120089172 [Benincasa hispida]2.3e-1336.03Show/hide
Query:  ISVNVDAAWVSSPPSTRIGAICRDQRGKIRRASARYIDVVYNAPLAELKAILEGLNLAKKIECGKITIKFDCS---------------------------
        I +NVDAAW  SP S+   AI RD +G ++      ID VY  PLAE   +L+GL L  K+   KI +K DCS                           
Subjt:  ISVNVDAAWVSSPPSTRIGAICRDQRGKIRRASARYIDVVYNAPLAELKAILEGLNLAKKIECGKITIKFDCS---------------------------

Query:  ---QTVNFVYTPRKENRVADSIAKEARRIGINESWI
             +NF Y PR  N++AD +AK  R +GIN+ W+
Subjt:  ---QTVNFVYTPRKENRVADSIAKEARRIGINESWI

TrEMBL top hitse value%identityAlignment
A0A446NU09 RNase H domain-containing protein1.5e-0529.05Show/hide
Query:  VNVDAAWVSSPPSTRIGAICRDQRGKIRRASARYIDVVYNAPLAELKAILEGLNLAKKIECGKITIKFDCSQTVN-------------------------
        +NVDA++     S   GA+ RD RG    A++ ++  +     AEL AI  G+ LA  I C  I I+ DCS  VN                         
Subjt:  VNVDAAWVSSPPSTRIGAICRDQRGKIRRASARYIDVVYNAPLAELKAILEGLNLAKKIECGKITIKFDCSQTVN-------------------------

Query:  -----FVYTPRKENRVADSIAKEARRIGINESWICFIPEWIVNVVEYD
             F +  R+ N+VAD +AK       + SW   IP++I +++  D
Subjt:  -----FVYTPRKENRVADSIAKEARRIGINESWICFIPEWIVNVVEYD

A0A6P4MAJ5 uncharacterized protein LOC1084551832.1e-0436.47Show/hide
Query:  ISVNVDAAWVSSPPSTRIGAICRDQRGKIRRASARYIDVVYNAPLAELKAILEGLNLAKKIECGKITIKFDCSQTVNFVYTPRKE
        I VNVDAA ++   S+ +GAI RDQ G +     +++D   +   AEL+A+ EGLNLA +++  ++ ++ D +  VN V    K+
Subjt:  ISVNVDAAWVSSPPSTRIGAICRDQRGKIRRASARYIDVVYNAPLAELKAILEGLNLAKKIECGKITIKFDCSQTVNFVYTPRKE

A0A6P4P147 uncharacterized protein LOC1084733723.3e-0537.65Show/hide
Query:  ISVNVDAAWVSSPPSTRIGAICRDQRGKIRRASARYIDVVYNAPLAELKAILEGLNLAKKIECGKITIKFDCSQTVNFVYTPRKE
        I VNVDAA ++   S+ +GAI RD  G +     +++D   N   AEL+A+ EGLNLA +++  ++ ++ D +  VN VY   K+
Subjt:  ISVNVDAAWVSSPPSTRIGAICRDQRGKIRRASARYIDVVYNAPLAELKAILEGLNLAKKIECGKITIKFDCSQTVNFVYTPRKE

M7Z366 Ketohexokinase1.3e-0426.67Show/hide
Query:  ISVNVDAAWVSSPPSTRIGAICRDQRGKIRRASARYIDVVYNAPLAELKAILEGLNLAKKIECGKITIKFDCS---------------------------
        + +NVD ++     S   GA+ RD RG    A++ ++  +     AEL AI  G+ LA  I C  I I+ DCS                           
Subjt:  ISVNVDAAWVSSPPSTRIGAICRDQRGKIRRASARYIDVVYNAPLAELKAILEGLNLAKKIECGKITIKFDCS---------------------------

Query:  ---QTVNFVYTPRKENRVADSIAKEARRIGINESWICFIPEWIVNVVEYD
            +++F +  R+ N+VAD +AK +     + SW   IP++I +++  D
Subjt:  ---QTVNFVYTPRKENRVADSIAKEARRIGINESWICFIPEWIVNVVEYD

Q10IA6 Retrotransposon protein, putative, unclassified1.6e-0432.98Show/hide
Query:  ISVNVDAAWVSSPPSTRIGAICRDQRGKIRRASARYIDVVYNAPLAELKAILEGLNLAKKIECGKITIKFDCSQTVNFVYTPRKENRVADSIAK
        + +NVDAA+     S  IG + RD  G    AS  ++  V +AP+AE  A+ +GL+LA+ I    + + +D   T++  +  R  N+VA  +A+
Subjt:  ISVNVDAAWVSSPPSTRIGAICRDQRGKIRRASARYIDVVYNAPLAELKAILEGLNLAKKIECGKITIKFDCSQTVNFVYTPRKENRVADSIAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.8e-0423.78Show/hide
Query:  ISVNVDAAWVSSPPSTRIGAICRDQRGKIRRASARYIDVVYNAPLAELKAILEGLNLAKKIECGKITIKFDCSQTVN-----------------------
        +  N DA W    P   IG I R++ G +    AR +    N   AEL+A+   +    +    +I  + D    VN                       
Subjt:  ISVNVDAAWVSSPPSTRIGAICRDQRGKIRRASARYIDVVYNAPLAELKAILEGLNLAKKIECGKITIKFDCSQTVN-----------------------

Query:  ------FVYTPRKENRVADSIAKEARRI-GINESWICFIPEWI
              F +TPR  N+VAD IA+E+      +      +P+W+
Subjt:  ------FVYTPRKENRVADSIAKEARRI-GINESWICFIPEWI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GATGAGAATATTTCAGTAAATGTTGATGCAGCATGGGTGTCTTCTCCTCCATCCACGAGAATCGGAGCCATCTGCAGAGATCAAAGAGGAAAAATCAGGAGAGCTTCAGC
AAGATATATTGATGTTGTGTATAATGCCCCTCTCGCAGAACTGAAAGCAATTCTCGAAGGGCTGAATTTGGCAAAGAAAATTGAATGTGGGAAAATTACAATTAAGTTTG
ATTGTAGCCAAACTGTAAATTTTGTGTACACCCCTAGAAAGGAAAATAGAGTAGCCGATTCTATTGCAAAGGAAGCTAGAAGAATAGGCATAAATGAGAGTTGGATATGC
TTCATCCCTGAGTGGATTGTTAATGTGGTCGAGTATGACCATATCGATTCTGCCCACTTGTCGGCGTTGGAGCCCTCGTCGGAGCCGTCGCCGTTACCATTTTTCTTTAC
TTTTTCTCCTCTTTTCTTTTTCTTTTCTCTCCTCCCCTCTTCCTTCCCTCCCCTCTTCTTTCTTTTCTCTCCTGTGGGTTTTGTACCTTCGAAGCACTGCTCGTGTCGCT
CACACCCAAATCTGTACAATCGATTTCAAGAGCGAACGAGCGGTGAAATCGATTTTCGAGGCTCCAATACTTCAGATTTGGAACGATTTTTGTGTGGGTTTTGTTCCGGC
ATGGGTGTTCGAGGCTCCAGTACTTCGGATCTGGTAGCGCCGGTGAACGCGCTGCGGGTGTGA
mRNA sequenceShow/hide mRNA sequence
GATGAGAATATTTCAGTAAATGTTGATGCAGCATGGGTGTCTTCTCCTCCATCCACGAGAATCGGAGCCATCTGCAGAGATCAAAGAGGAAAAATCAGGAGAGCTTCAGC
AAGATATATTGATGTTGTGTATAATGCCCCTCTCGCAGAACTGAAAGCAATTCTCGAAGGGCTGAATTTGGCAAAGAAAATTGAATGTGGGAAAATTACAATTAAGTTTG
ATTGTAGCCAAACTGTAAATTTTGTGTACACCCCTAGAAAGGAAAATAGAGTAGCCGATTCTATTGCAAAGGAAGCTAGAAGAATAGGCATAAATGAGAGTTGGATATGC
TTCATCCCTGAGTGGATTGTTAATGTGGTCGAGTATGACCATATCGATTCTGCCCACTTGTCGGCGTTGGAGCCCTCGTCGGAGCCGTCGCCGTTACCATTTTTCTTTAC
TTTTTCTCCTCTTTTCTTTTTCTTTTCTCTCCTCCCCTCTTCCTTCCCTCCCCTCTTCTTTCTTTTCTCTCCTGTGGGTTTTGTACCTTCGAAGCACTGCTCGTGTCGCT
CACACCCAAATCTGTACAATCGATTTCAAGAGCGAACGAGCGGTGAAATCGATTTTCGAGGCTCCAATACTTCAGATTTGGAACGATTTTTGTGTGGGTTTTGTTCCGGC
ATGGGTGTTCGAGGCTCCAGTACTTCGGATCTGGTAGCGCCGGTGAACGCGCTGCGGGTGTGA
Protein sequenceShow/hide protein sequence
DENISVNVDAAWVSSPPSTRIGAICRDQRGKIRRASARYIDVVYNAPLAELKAILEGLNLAKKIECGKITIKFDCSQTVNFVYTPRKENRVADSIAKEARRIGINESWIC
FIPEWIVNVVEYDHIDSAHLSALEPSSEPSPLPFFFTFSPLFFFFSLLPSSFPPLFFLFSPVGFVPSKHCSCRSHPNLYNRFQERTSGEIDFRGSNTSDLERFLCGFCSG
MGVRGSSTSDLVAPVNALRV