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Spg003095 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003095
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSUPPRESSOR OF ABI3-5
Genome locationscaffold12:38046002..38049092
RNA-Seq ExpressionSpg003095
SyntenySpg003095
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046226.1 RNA-binding protein 5-B isoform X2 [Cucumis melo var. makuwa]3.9e-1278.85Show/hide
Query:  RGSLNAMPFPLGVGGGRVSGDANLDTFEVITTNKAIDENKVVNRKLRNMRKH
        +GSL+AMPFP GVGGGRVSGDANL+TFEVIT +KAIDEN V NR LRNM  H
Subjt:  RGSLNAMPFPLGVGGGRVSGDANLDTFEVITTNKAIDENKVVNRKLRNMRKH
XP_016902976.1 PREDICTED: SUPPRESSOR OF ABI3-5 [Cucumis melo]3.9e-1278.85Show/hide
Query:  RGSLNAMPFPLGVGGGRVSGDANLDTFEVITTNKAIDENKVVNRKLRNMRKH
        +GSL+AMPFP GVGGGRVSGDANL+TFEVIT +KAIDEN V NR LRNM  H
Subjt:  RGSLNAMPFPLGVGGGRVSGDANLDTFEVITTNKAIDENKVVNRKLRNMRKH
XP_022141549.1 SUPPRESSOR OF ABI3-5 isoform X1 [Momordica charantia]6.7e-1281.63Show/hide
Query:  RGSLNAMPFPLGVGGGRVSGDANLDTFEVITTNKAIDENKVVNRKLRNM
        +GSL+AMPFP GVGGGRVSGDANL+TFEVIT +KAIDEN V NR LRNM
Subjt:  RGSLNAMPFPLGVGGGRVSGDANLDTFEVITTNKAIDENKVVNRKLRNM
XP_022141551.1 SUPPRESSOR OF ABI3-5 isoform X2 [Momordica charantia]6.7e-1281.63Show/hide
Query:  RGSLNAMPFPLGVGGGRVSGDANLDTFEVITTNKAIDENKVVNRKLRNM
        +GSL+AMPFP GVGGGRVSGDANL+TFEVIT +KAIDEN V NR LRNM
Subjt:  RGSLNAMPFPLGVGGGRVSGDANLDTFEVITTNKAIDENKVVNRKLRNM
XP_038876047.1 LOW QUALITY PROTEIN: SUPPRESSOR OF ABI3-5 [Benincasa hispida]3.9e-1278.85Show/hide
Query:  RGSLNAMPFPLGVGGGRVSGDANLDTFEVITTNKAIDENKVVNRKLRNMRKH
        +GSL+AMPFP GVGGGRVSGDANL+TFEVIT +KAIDEN V NR LRNM  H
Subjt:  RGSLNAMPFPLGVGGGRVSGDANLDTFEVITTNKAIDENKVVNRKLRNMRKH
TrEMBL top hitse value%identityAlignment
A0A1S4E414 SUPPRESSOR OF ABI3-51.9e-1278.85Show/hide
Query:  RGSLNAMPFPLGVGGGRVSGDANLDTFEVITTNKAIDENKVVNRKLRNMRKH
        +GSL+AMPFP GVGGGRVSGDANL+TFEVIT +KAIDEN V NR LRNM  H
Subjt:  RGSLNAMPFPLGVGGGRVSGDANLDTFEVITTNKAIDENKVVNRKLRNMRKH
A0A5D3D622 RNA-binding protein 5-B isoform X21.9e-1278.85Show/hide
Query:  RGSLNAMPFPLGVGGGRVSGDANLDTFEVITTNKAIDENKVVNRKLRNMRKH
        +GSL+AMPFP GVGGGRVSGDANL+TFEVIT +KAIDEN V NR LRNM  H
Subjt:  RGSLNAMPFPLGVGGGRVSGDANLDTFEVITTNKAIDENKVVNRKLRNMRKH
A0A6J1CIZ6 SUPPRESSOR OF ABI3-5 isoform X13.2e-1281.63Show/hide
Query:  RGSLNAMPFPLGVGGGRVSGDANLDTFEVITTNKAIDENKVVNRKLRNM
        +GSL+AMPFP GVGGGRVSGDANL+TFEVIT +KAIDEN V NR LRNM
Subjt:  RGSLNAMPFPLGVGGGRVSGDANLDTFEVITTNKAIDENKVVNRKLRNM
A0A6J1CJI5 SUPPRESSOR OF ABI3-5 isoform X23.2e-1281.63Show/hide
Query:  RGSLNAMPFPLGVGGGRVSGDANLDTFEVITTNKAIDENKVVNRKLRNM
        +GSL+AMPFP GVGGGRVSGDANL+TFEVIT +KAIDEN V NR LRNM
Subjt:  RGSLNAMPFPLGVGGGRVSGDANLDTFEVITTNKAIDENKVVNRKLRNM
A0A6J1JH15 SUPPRESSOR OF ABI3-5 isoform X14.2e-1276.92Show/hide
Query:  RGSLNAMPFPLGVGGGRVSGDANLDTFEVITTNKAIDENKVVNRKLRNMRKH
        +GSL++MPFP GVGGGRVSGDANL+TFEVIT +KAIDEN V NR LRNM  H
Subjt:  RGSLNAMPFPLGVGGGRVSGDANLDTFEVITTNKAIDENKVVNRKLRNMRKH
SwissProt top hitse value%identityAlignment
F4JCU0 SUPPRESSOR OF ABI3-51.3e-0548.08Show/hide
Query:  RGSLNAMPFPLGVGGGRVSGDANLDTFEVITTNKAIDENKVVNRKLRNMRKH
        +GS +  PFP GVGG  ++    + +F+VIT  +AIDE+ V NR LRNM  H
Subjt:  RGSLNAMPFPLGVGGGRVSGDANLDTFEVITTNKAIDENKVVNRKLRNMRKH
Arabidopsis top hitse value%identityAlignment
AT3G54230.1 suppressor of abi3-59.0e-0748.08Show/hide
Query:  RGSLNAMPFPLGVGGGRVSGDANLDTFEVITTNKAIDENKVVNRKLRNMRKH
        +GS +  PFP GVGG  ++    + +F+VIT  +AIDE+ V NR LRNM  H
Subjt:  RGSLNAMPFPLGVGGGRVSGDANLDTFEVITTNKAIDENKVVNRKLRNMRKH
AT3G54230.2 suppressor of abi3-59.0e-0748.08Show/hide
Query:  RGSLNAMPFPLGVGGGRVSGDANLDTFEVITTNKAIDENKVVNRKLRNMRKH
        +GS +  PFP GVGG  ++    + +F+VIT  +AIDE+ V NR LRNM  H
Subjt:  RGSLNAMPFPLGVGGGRVSGDANLDTFEVITTNKAIDENKVVNRKLRNMRKH

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAGCCTTGCACTGATTAAGCCCTTTCGGTCGAGCAACGCCTATCCAAGGGGTTCTTTGAATGCAATGCCTTTTCCTCTTGGCGTTGGTGGAGGACGTGTAAGTGG
GGATGCAAATCTTGACACTTTTGAAGTTATTACAACGAATAAAGCAATCGATGAGAATAAAGTTGTCAACAGGAAGCTCCGTAACATGAGAAAGCACGTTGCTCAGTTCT
AG
mRNA sequenceShow/hide mRNA sequence
ATGTCGAGCCTTGCACTGATTAAGCCCTTTCGGTCGAGCAACGCCTATCCAAGGGGTTCTTTGAATGCAATGCCTTTTCCTCTTGGCGTTGGTGGAGGACGTGTAAGTGG
GGATGCAAATCTTGACACTTTTGAAGTTATTACAACGAATAAAGCAATCGATGAGAATAAAGTTGTCAACAGGAAGCTCCGTAACATGAGAAAGCACGTTGCTCAGTTCT
AG
Protein sequenceShow/hide protein sequence
MSSLALIKPFRSSNAYPRGSLNAMPFPLGVGGGRVSGDANLDTFEVITTNKAIDENKVVNRKLRNMRKHVAQF