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Spg003103 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003103
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold12:37508956..37509583
RNA-Seq ExpressionSpg003103
SyntenySpg003103
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]6.4e-0740Show/hide
Query:  ARWVLILDGYYKHSCDASWSKERKYGELGWILRDWKGSLLAAGLRCINTPWDISWLESLAIVEGLRAIPLVTTMRLIVESDSLQA
        A+W       +K + +A+W  +   G +GWILRD KG ++ A  R I    +I++LE +AI EGLRAI       + +ESDSL+A
Subjt:  ARWVLILDGYYKHSCDASWSKERKYGELGWILRDWKGSLLAAGLRCINTPWDISWLESLAIVEGLRAIPLVTTMRLIVESDSLQA

XP_022148737.1 uncharacterized protein LOC111017329 [Momordica charantia]5.5e-0638.46Show/hide
Query:  DGYYKHSCDASWSKERKYGELGWILRDWKGSLLAAGLRCINTPWDISWLESLAIVEGLRAIPLVTTMRLIVESDSLQA
        D ++K + DA+W   +  G LGWI+R+ K  +  AG + I    DI++LE +AI  G+ A+   +++ LI+ES+SL+A
Subjt:  DGYYKHSCDASWSKERKYGELGWILRDWKGSLLAAGLRCINTPWDISWLESLAIVEGLRAIPLVTTMRLIVESDSLQA

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]2.2e-0741.18Show/hide
Query:  ARWVLILDGYYKHSCDASWSKERKYGELGWILRDWKGSLLAAGLRCINTPWDISWLESLAIVEGLRAIPLVTTMRLIVESDSLQA
        ARW       +K + DA+W  +     +GWILRD KG ++  G R I    +I++LE +AI EGLRAI       + +ESDSL+A
Subjt:  ARWVLILDGYYKHSCDASWSKERKYGELGWILRDWKGSLLAAGLRCINTPWDISWLESLAIVEGLRAIPLVTTMRLIVESDSLQA

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]2.2e-0741.18Show/hide
Query:  ARWVLILDGYYKHSCDASWSKERKYGELGWILRDWKGSLLAAGLRCINTPWDISWLESLAIVEGLRAIPLVTTMRLIVESDSLQA
        ARW       +K + DA+W  +     +GWILRD KG ++  G R I    +I++LE +AI EGLRAI       + +ESDSL+A
Subjt:  ARWVLILDGYYKHSCDASWSKERKYGELGWILRDWKGSLLAAGLRCINTPWDISWLESLAIVEGLRAIPLVTTMRLIVESDSLQA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.4e-0640.86Show/hide
Query:  ARWVLILDGYYKHSCDASWSKERKYGELGWILRDWKGSLLAAGLRCINTPWDISWLESLAIVEGLRAI------PLVT--TMRLIVESDSLQA
        ARW       +K + DA+W  +   G +GWILRD KG ++ A  R I T  +I++LE +AI EGLRAI      P+       + +ESDSL+A
Subjt:  ARWVLILDGYYKHSCDASWSKERKYGELGWILRDWKGSLLAAGLRCINTPWDISWLESLAIVEGLRAI------PLVT--TMRLIVESDSLQA

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134123.1e-0740Show/hide
Query:  ARWVLILDGYYKHSCDASWSKERKYGELGWILRDWKGSLLAAGLRCINTPWDISWLESLAIVEGLRAIPLVTTMRLIVESDSLQA
        A+W       +K + +A+W  +   G +GWILRD KG ++ A  R I    +I++LE +AI EGLRAI       + +ESDSL+A
Subjt:  ARWVLILDGYYKHSCDASWSKERKYGELGWILRDWKGSLLAAGLRCINTPWDISWLESLAIVEGLRAIPLVTTMRLIVESDSLQA

A0A6J1D5W1 uncharacterized protein LOC1110173292.6e-0638.46Show/hide
Query:  DGYYKHSCDASWSKERKYGELGWILRDWKGSLLAAGLRCINTPWDISWLESLAIVEGLRAIPLVTTMRLIVESDSLQA
        D ++K + DA+W   +  G LGWI+R+ K  +  AG + I    DI++LE +AI  G+ A+   +++ LI+ES+SL+A
Subjt:  DGYYKHSCDASWSKERKYGELGWILRDWKGSLLAAGLRCINTPWDISWLESLAIVEGLRAIPLVTTMRLIVESDSLQA

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X11.1e-0741.18Show/hide
Query:  ARWVLILDGYYKHSCDASWSKERKYGELGWILRDWKGSLLAAGLRCINTPWDISWLESLAIVEGLRAIPLVTTMRLIVESDSLQA
        ARW       +K + DA+W  +     +GWILRD KG ++  G R I    +I++LE +AI EGLRAI       + +ESDSL+A
Subjt:  ARWVLILDGYYKHSCDASWSKERKYGELGWILRDWKGSLLAAGLRCINTPWDISWLESLAIVEGLRAIPLVTTMRLIVESDSLQA

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X21.1e-0741.18Show/hide
Query:  ARWVLILDGYYKHSCDASWSKERKYGELGWILRDWKGSLLAAGLRCINTPWDISWLESLAIVEGLRAIPLVTTMRLIVESDSLQA
        ARW       +K + DA+W  +     +GWILRD KG ++  G R I    +I++LE +AI EGLRAI       + +ESDSL+A
Subjt:  ARWVLILDGYYKHSCDASWSKERKYGELGWILRDWKGSLLAAGLRCINTPWDISWLESLAIVEGLRAIPLVTTMRLIVESDSLQA

A0A6J1DSV1 uncharacterized protein LOC1110236086.9e-0740.86Show/hide
Query:  ARWVLILDGYYKHSCDASWSKERKYGELGWILRDWKGSLLAAGLRCINTPWDISWLESLAIVEGLRAI------PLVT--TMRLIVESDSLQA
        ARW       +K + DA+W  +   G +GWILRD KG ++ A  R I T  +I++LE +AI EGLRAI      P+       + +ESDSL+A
Subjt:  ARWVLILDGYYKHSCDASWSKERKYGELGWILRDWKGSLLAAGLRCINTPWDISWLESLAIVEGLRAI------PLVT--TMRLIVESDSLQA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACCAGCGAAACTCTTTCCTTCGTGTAGATCAGGCAGCGATTCATCTCACCTCTACCCAGCAGACGACGATGACGGTGCACGCGAGATGGGTTCTGATTCTGGACGG
CTACTATAAACATAGTTGTGATGCTTCGTGGAGCAAGGAGAGAAAATATGGCGAACTGGGTTGGATTCTTCGAGATTGGAAGGGGTCTCTGTTAGCGGCGGGGCTCCGAT
GCATAAATACACCGTGGGATATCAGTTGGCTCGAATCGCTGGCGATCGTTGAAGGGTTGCGGGCGATTCCTCTGGTGACTACAATGCGGCTTATTGTGGAGAGCGATAGC
CTTCAGGCTTATGAAGAGGAGGATTCTAAAACATGGCTCCACTCTTTTCCAGGTTGGCTTTTGTTAGCTAATCAAGCTGATGTTGGTTGTGTTCATCACAATGTTGGGGG
ATCTTATCCCACATGTGATTTCCTTGTGAACAATTCTGCTATTAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTACCAGCGAAACTCTTTCCTTCGTGTAGATCAGGCAGCGATTCATCTCACCTCTACCCAGCAGACGACGATGACGGTGCACGCGAGATGGGTTCTGATTCTGGACGG
CTACTATAAACATAGTTGTGATGCTTCGTGGAGCAAGGAGAGAAAATATGGCGAACTGGGTTGGATTCTTCGAGATTGGAAGGGGTCTCTGTTAGCGGCGGGGCTCCGAT
GCATAAATACACCGTGGGATATCAGTTGGCTCGAATCGCTGGCGATCGTTGAAGGGTTGCGGGCGATTCCTCTGGTGACTACAATGCGGCTTATTGTGGAGAGCGATAGC
CTTCAGGCTTATGAAGAGGAGGATTCTAAAACATGGCTCCACTCTTTTCCAGGTTGGCTTTTGTTAGCTAATCAAGCTGATGTTGGTTGTGTTCATCACAATGTTGGGGG
ATCTTATCCCACATGTGATTTCCTTGTGAACAATTCTGCTATTAATTAA
Protein sequenceShow/hide protein sequence
MYQRNSFLRVDQAAIHLTSTQQTTMTVHARWVLILDGYYKHSCDASWSKERKYGELGWILRDWKGSLLAAGLRCINTPWDISWLESLAIVEGLRAIPLVTTMRLIVESDS
LQAYEEEDSKTWLHSFPGWLLLANQADVGCVHHNVGGSYPTCDFLVNNSAIN