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Spg003123 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003123
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold4:32507328..32516920
RNA-Seq ExpressionSpg003123
SyntenySpg003123
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]5.9e-2148.28Show/hide
Query:  GFEVEEDRKS--SCKASHSRIGVQTVNLWPRGNRSGLQTRELAK-----------------TVEIELPVPDTLPKSAESSRSSSSTWVELYNESVHIVNV
        GF V  D  S      S+ ++ ++    WPRGNR GLQT EL K                  VEIELP+PDTLP SAESS S+SSTW+ELY ESVH+  +
Subjt:  GFEVEEDRKS--SCKASHSRIGVQTVNLWPRGNRSGLQTRELAK-----------------TVEIELPVPDTLPKSAESSRSSSSTWVELYNESVHIVNV

Query:  LINVTG----------GSTGIVGGDDVRWLHAIFRTELAGGPGGG
            +           GS GIV GDDV WLHAIFR + AGGPGGG
Subjt:  LINVTG----------GSTGIVGGDDVRWLHAIFRTELAGGPGGG

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.0e-2147.76Show/hide
Query:  EDFRGFEVEEDRKSSCKASHSRIGVQTVNLWPRGNRSGLQTRELAKTVEIELPVPDTLPKSAESSRSSSSTWVELYNESVHIVNVLINVTG---------
        E+ RG    E  +   K+    +    +++ PRGNR  L T +L KTVEIELPVPDTLP SAESS+S+SSTW+ELY ESVH+  +    +          
Subjt:  EDFRGFEVEEDRKSSCKASHSRIGVQTVNLWPRGNRSGLQTRELAKTVEIELPVPDTLPKSAESSRSSSSTWVELYNESVHIVNVLINVTG---------

Query:  -GSTGIVGGDDVRWLHAIFRTELAGGPGGGAIHP
         GS GIV GDD+ WLHA+F  + AG PGGG + P
Subjt:  -GSTGIVGGDDVRWLHAIFRTELAGGPGGGAIHP

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]4.5e-2154.7Show/hide
Query:  PRGNRSGLQTRELAKT---------------VEIELPVPDTLPKSAESSRSSSSTWVELYNESVHI-------------VNVLINVTGGSTGIVGGDDVR
        PRGNR  LQTREL KT               V IELPVPD LP SAESS S+SSTW+ELY ESVH+             ++++ NV+ GSTGIV GDDV 
Subjt:  PRGNRSGLQTRELAKT---------------VEIELPVPDTLPKSAESSRSSSSTWVELYNESVHI-------------VNVLINVTGGSTGIVGGDDVR

Query:  WLHAIFRTELAGGPGGG
        WLHA+FR +  GGPGGG
Subjt:  WLHAIFRTELAGGPGGG

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.2e-2153.66Show/hide
Query:  QTVNLWPRGNRSGLQTRELAKTV---------------EIELPVPDTLPKSAESSRSSSSTWVELYNESVHI-------------VNVLINVTGGSTGIV
        Q + L PRGNR  LQT EL KTV                IELPVPDTLP SAESS S+SSTW+ELY ESVH+             ++++ NV+ GSTGIV
Subjt:  QTVNLWPRGNRSGLQTRELAKTV---------------EIELPVPDTLPKSAESSRSSSSTWVELYNESVHI-------------VNVLINVTGGSTGIV

Query:  GGDDVRWLHAIFRTELAGGPGGG
         GDDV WLHA+FR +  GGPGGG
Subjt:  GGDDVRWLHAIFRTELAGGPGGG

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]5.9e-2148.28Show/hide
Query:  GFEVEEDRKS--SCKASHSRIGVQTVNLWPRGNRSGLQTRELAK-----------------TVEIELPVPDTLPKSAESSRSSSSTWVELYNESVHIVNV
        GF V  D  S      S+ ++ ++    WPRGNR GLQT EL K                  VEIELP+PDTLP SAESS S+SSTW+ELY ESVH+  +
Subjt:  GFEVEEDRKS--SCKASHSRIGVQTVNLWPRGNRSGLQTRELAK-----------------TVEIELPVPDTLPKSAESSRSSSSTWVELYNESVHIVNV

Query:  LINVTG----------GSTGIVGGDDVRWLHAIFRTELAGGPGGG
            +           GS GIV GDDV WLHAIFR + AGGPGGG
Subjt:  LINVTG----------GSTGIVGGDDVRWLHAIFRTELAGGPGGG

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein2.9e-2148.28Show/hide
Query:  GFEVEEDRKS--SCKASHSRIGVQTVNLWPRGNRSGLQTRELAK-----------------TVEIELPVPDTLPKSAESSRSSSSTWVELYNESVHIVNV
        GF V  D  S      S+ ++ ++    WPRGNR GLQT EL K                  VEIELP+PDTLP SAESS S+SSTW+ELY ESVH+  +
Subjt:  GFEVEEDRKS--SCKASHSRIGVQTVNLWPRGNRSGLQTRELAK-----------------TVEIELPVPDTLPKSAESSRSSSSTWVELYNESVHIVNV

Query:  LINVTG----------GSTGIVGGDDVRWLHAIFRTELAGGPGGG
            +           GS GIV GDDV WLHAIFR + AGGPGGG
Subjt:  LINVTG----------GSTGIVGGDDVRWLHAIFRTELAGGPGGG

A0A5A7UAH6 CCHC-type domain-containing protein9.8e-2247.76Show/hide
Query:  EDFRGFEVEEDRKSSCKASHSRIGVQTVNLWPRGNRSGLQTRELAKTVEIELPVPDTLPKSAESSRSSSSTWVELYNESVHIVNVLINVTG---------
        E+ RG    E  +   K+    +    +++ PRGNR  L T +L KTVEIELPVPDTLP SAESS+S+SSTW+ELY ESVH+  +    +          
Subjt:  EDFRGFEVEEDRKSSCKASHSRIGVQTVNLWPRGNRSGLQTRELAKTVEIELPVPDTLPKSAESSRSSSSTWVELYNESVHIVNVLINVTG---------

Query:  -GSTGIVGGDDVRWLHAIFRTELAGGPGGGAIHP
         GS GIV GDD+ WLHA+F  + AG PGGG + P
Subjt:  -GSTGIVGGDDVRWLHAIFRTELAGGPGGGAIHP

A0A5A7UT17 CCHC-type domain-containing protein2.2e-2154.7Show/hide
Query:  PRGNRSGLQTRELAKT---------------VEIELPVPDTLPKSAESSRSSSSTWVELYNESVHI-------------VNVLINVTGGSTGIVGGDDVR
        PRGNR  LQTREL KT               V IELPVPD LP SAESS S+SSTW+ELY ESVH+             ++++ NV+ GSTGIV GDDV 
Subjt:  PRGNRSGLQTRELAKT---------------VEIELPVPDTLPKSAESSRSSSSTWVELYNESVHI-------------VNVLINVTGGSTGIVGGDDVR

Query:  WLHAIFRTELAGGPGGG
        WLHA+FR +  GGPGGG
Subjt:  WLHAIFRTELAGGPGGG

A0A5D3CJX3 CCHC-type domain-containing protein5.8e-2253.66Show/hide
Query:  QTVNLWPRGNRSGLQTRELAKTV---------------EIELPVPDTLPKSAESSRSSSSTWVELYNESVHI-------------VNVLINVTGGSTGIV
        Q + L PRGNR  LQT EL KTV                IELPVPDTLP SAESS S+SSTW+ELY ESVH+             ++++ NV+ GSTGIV
Subjt:  QTVNLWPRGNRSGLQTRELAKTV---------------EIELPVPDTLPKSAESSRSSSSTWVELYNESVHI-------------VNVLINVTGGSTGIV

Query:  GGDDVRWLHAIFRTELAGGPGGG
         GDDV WLHA+FR +  GGPGGG
Subjt:  GGDDVRWLHAIFRTELAGGPGGG

A0A5D3DR18 Gag/pol protein2.9e-2148.28Show/hide
Query:  GFEVEEDRKS--SCKASHSRIGVQTVNLWPRGNRSGLQTRELAK-----------------TVEIELPVPDTLPKSAESSRSSSSTWVELYNESVHIVNV
        GF V  D  S      S+ ++ ++    WPRGNR GLQT EL K                  VEIELP+PDTLP SAESS S+SSTW+ELY ESVH+  +
Subjt:  GFEVEEDRKS--SCKASHSRIGVQTVNLWPRGNRSGLQTRELAK-----------------TVEIELPVPDTLPKSAESSRSSSSTWVELYNESVHIVNV

Query:  LINVTG----------GSTGIVGGDDVRWLHAIFRTELAGGPGGG
            +           GS GIV GDDV WLHAIFR + AGGPGGG
Subjt:  LINVTG----------GSTGIVGGDDVRWLHAIFRTELAGGPGGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTGTTTCGAGCATTCTGGGGTGTACGAGTTGAATCCGAAGCTCTAGTTTATAT
GGATGGAAAGCTTATTCAATTTCCTACAACTGTCATGAAGACGTCGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCC
CGGTGCCTGATACACTGCCAACGTCTGCTGGAAGTTCCAGATCAAGCTCCAGAGGGTCAACGGATATCGTTGGAGGAGACGATGTTCGTTGGCTTCATGCCATCTTCCGT
ACTGAGCTAGCAGGTGGTCTGGGAGGGGAGCACTTGAGGGAGAGAGTGAAGGAGGAAGAAGAAGAAGATTTTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATG
CAAAGCCAGCCATAGCAGAATCGGAGTTCAAACTGTCAACCTCTGGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCC
CGGTGCCTGATACACTACCAAAGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATAATGAGTCTGTTCATATTGTAAATGTTTTGATCAACGTT
ACAGGAGGGTCAACGGGTATCGTTGGAGGAGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACAGAGCTAGCAGGTGGTCCGGGAGGGGGAGCAATTCATCCTCTTCC
TTTGGATCCACAAAATGGGATTCTTGGAGCTTTGAGACTTGCTAAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTGTTTCGAGCATTCTGGGGTGTACGAGTTGAATCCGAAGCTCTAGTTTATAT
GGATGGAAAGCTTATTCAATTTCCTACAACTGTCATGAAGACGTCGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCC
CGGTGCCTGATACACTGCCAACGTCTGCTGGAAGTTCCAGATCAAGCTCCAGAGGGTCAACGGATATCGTTGGAGGAGACGATGTTCGTTGGCTTCATGCCATCTTCCGT
ACTGAGCTAGCAGGTGGTCTGGGAGGGGAGCACTTGAGGGAGAGAGTGAAGGAGGAAGAAGAAGAAGATTTTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATG
CAAAGCCAGCCATAGCAGAATCGGAGTTCAAACTGTCAACCTCTGGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCC
CGGTGCCTGATACACTACCAAAGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATAATGAGTCTGTTCATATTGTAAATGTTTTGATCAACGTT
ACAGGAGGGTCAACGGGTATCGTTGGAGGAGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACAGAGCTAGCAGGTGGTCCGGGAGGGGGAGCAATTCATCCTCTTCC
TTTGGATCCACAAAATGGGATTCTTGGAGCTTTGAGACTTGCTAAG
Protein sequenceShow/hide protein sequence
MENRAQDFRAKQEDLWFSLVFRAFWGVRVESEALVYMDGKLIQFPTTVMKTSPRGNRSGLQTRELAKTVEIELPVPDTLPTSAGSSRSSSRGSTDIVGGDDVRWLHAIFR
TELAGGLGGEHLRERVKEEEEEDFRGFEVEEDRKSSCKASHSRIGVQTVNLWPRGNRSGLQTRELAKTVEIELPVPDTLPKSAESSRSSSSTWVELYNESVHIVNVLINV
TGGSTGIVGGDDVRWLHAIFRTELAGGPGGGAIHPLPLDPQNGILGALRLAK