CuGenDBv2

Gene ID	Spg003173
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ty1-copia retrotransposon protein
Genome location	scaffold4:29666218..29673442
RNA-Seq Expression	Spg003173
Synteny	Spg003173
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0040554.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

1.4e-51

53.63

Show/hide

Query:  MSIK---KHLPDLSKLEPLGGSNYRRWSQKLLIFFEQLEVDYIITSDYVEKSAAPLLIWKNPKRSSLIHIAKEVQSVPQKPKGSHDIDPERFEKDNKAVR
        MSIK   K LPDLSKLEPL G+NYRRWSQKLLIFFEQLEVDYI+T+D             +   SS I I   V +V ++ K    IDPE++ KDNK VR
Subjt:  MSIK---KHLPDLSKLEPLGGSNYRRWSQKLLIFFEQLEVDYIITSDYVEKSAAPLLIWKNPKRSSLIHIAKEVQSVPQKPKGSHDIDPERFEKDNKAVR

Query:  GHLLNHMNDSLFE-------------------------------------------PV--RCSEYENLVANILTEGMKMCEILQANVLLEKFPSSWSDYR
         HLLNHM+D +F+                                           PV  +  EYENLVAN+L+EGMKMCEILQANVLLEKFP SW+DYR
Subjt:  GHLLNHMNDSLFE-------------------------------------------PV--RCSEYENLVANILTEGMKMCEILQANVLLEKFPSSWSDYR

Query:  NHLKHKKKDLTLQELISHMRIEEAT---GKKISWNLNPEFSNANLVES
        NHLKHKKKDL LQELISHMR EEA     K  S NLN    NANLVES
Subjt:  NHLKHKKKDLTLQELISHMRIEEAT---GKKISWNLNPEFSNANLVES

KAA0051006.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

8.9e-51

52.42

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Query:  MSIK---KHLPDLSKLEPLGGSNYRRWSQKLLIFFEQLEVDYIITSDYVEKSAAPLLIWKNPKRSSLIHIAKEVQSVPQKPKGSHDIDPERFEKDNKAVR
        MSIK   K LPDLSKLEPL G+NYRRWSQKLLIFFEQLEVDY++T+D             +   SS   +     +V  + K    IDPE++ KDNK VR
Subjt:  MSIK---KHLPDLSKLEPLGGSNYRRWSQKLLIFFEQLEVDYIITSDYVEKSAAPLLIWKNPKRSSLIHIAKEVQSVPQKPKGSHDIDPERFEKDNKAVR

Query:  GHLLNHMNDSLFE-------------------------------------------PV--RCSEYENLVANILTEGMKMCEILQANVLLEKFPSSWSDYR
        GHLLNHM+D +F+                                           PV  +  EYENLVAN+L+EGMKMCEILQANVLLEKFP SW+DYR
Subjt:  GHLLNHMNDSLFE-------------------------------------------PV--RCSEYENLVANILTEGMKMCEILQANVLLEKFPSSWSDYR

Query:  NHLKHKKKDLTLQELISHMRIEEAT---GKKISWNLNPEFSNANLVES
        NHLKHKKKDL LQELISHMR EEA     K  S NLN    NANLVES
Subjt:  NHLKHKKKDLTLQELISHMRIEEAT---GKKISWNLNPEFSNANLVES

TYK04394.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

8.9e-51

52.42

Show/hide

Query:  MSIK---KHLPDLSKLEPLGGSNYRRWSQKLLIFFEQLEVDYIITSDYVEKSAAPLLIWKNPKRSSLIHIAKEVQSVPQKPKGSHDIDPERFEKDNKAVR
        MSIK   K LPDLSKLEPL G+NYRRWSQKLLIFFEQLEVDY++T+D             +   SS   +     +V  + K    IDPE++ KDNK VR
Subjt:  MSIK---KHLPDLSKLEPLGGSNYRRWSQKLLIFFEQLEVDYIITSDYVEKSAAPLLIWKNPKRSSLIHIAKEVQSVPQKPKGSHDIDPERFEKDNKAVR

Query:  GHLLNHMNDSLFE-------------------------------------------PV--RCSEYENLVANILTEGMKMCEILQANVLLEKFPSSWSDYR
        GHLLNHM+D +F+                                           PV  +  EYENLVAN+L+EGMKMCEILQANVLLEKFP SW+DYR
Subjt:  GHLLNHMNDSLFE-------------------------------------------PV--RCSEYENLVANILTEGMKMCEILQANVLLEKFPSSWSDYR

Query:  NHLKHKKKDLTLQELISHMRIEEAT---GKKISWNLNPEFSNANLVES
        NHLKHKKKDL LQELISHMR EEA     K  S NLN    NANLVES
Subjt:  NHLKHKKKDLTLQELISHMRIEEAT---GKKISWNLNPEFSNANLVES

TYK05597.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

1.4e-51

53.63

Show/hide

Query:  MSIK---KHLPDLSKLEPLGGSNYRRWSQKLLIFFEQLEVDYIITSDYVEKSAAPLLIWKNPKRSSLIHIAKEVQSVPQKPKGSHDIDPERFEKDNKAVR
        MSIK   K LPDLSKLEPL G+NYRRWSQKLLIFFEQLEVDYI+T+D             +   SS I I   V +V ++ K    IDPE++ KDNK VR
Subjt:  MSIK---KHLPDLSKLEPLGGSNYRRWSQKLLIFFEQLEVDYIITSDYVEKSAAPLLIWKNPKRSSLIHIAKEVQSVPQKPKGSHDIDPERFEKDNKAVR

Query:  GHLLNHMNDSLFE-------------------------------------------PV--RCSEYENLVANILTEGMKMCEILQANVLLEKFPSSWSDYR
         HLLNHM+D +F+                                           PV  +  EYENLVAN+L+EGMKMCEILQANVLLEKFP SW+DYR
Subjt:  GHLLNHMNDSLFE-------------------------------------------PV--RCSEYENLVANILTEGMKMCEILQANVLLEKFPSSWSDYR

Query:  NHLKHKKKDLTLQELISHMRIEEAT---GKKISWNLNPEFSNANLVES
        NHLKHKKKDL LQELISHMR EEA     K  S NLN    NANLVES
Subjt:  NHLKHKKKDLTLQELISHMRIEEAT---GKKISWNLNPEFSNANLVES

TYK26791.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

2.6e-50

52.42

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Query:  MSIK---KHLPDLSKLEPLGGSNYRRWSQKLLIFFEQLEVDYIITSDYVEKSAAPLLIWKNPKRSSLIHIAKEVQSVPQKPKGSHDIDPERFEKDNKAVR
        MSIK   K LPDLSKLEPL G+NYRRWSQKLLIFFEQLEVDY++T+D             +   SS   +     +V  + K    IDPE++ KDNK VR
Subjt:  MSIK---KHLPDLSKLEPLGGSNYRRWSQKLLIFFEQLEVDYIITSDYVEKSAAPLLIWKNPKRSSLIHIAKEVQSVPQKPKGSHDIDPERFEKDNKAVR

Query:  GHLLNHMNDSLFE-------------------------------------------PV--RCSEYENLVANILTEGMKMCEILQANVLLEKFPSSWSDYR
        GHLLNHM+D +F+                                           PV  +  EYENLVAN+L+EGMKMCEILQANVLLEKFP SW+DYR
Subjt:  GHLLNHMNDSLFE-------------------------------------------PV--RCSEYENLVANILTEGMKMCEILQANVLLEKFPSSWSDYR

Query:  NHLKHKKKDLTLQELISHMRIEEAT---GKKISWNLNPEFSNANLVES
        NHLKHKKKDL LQELISHMR EEA     K  S NLN    NANLVES
Subjt:  NHLKHKKKDLTLQELISHMRIEEAT---GKKISWNLNPEFSNANLVES

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TAR9 Ty1-copia retrotransposon protein

6.6e-52

53.63

Show/hide

Query:  MSIK---KHLPDLSKLEPLGGSNYRRWSQKLLIFFEQLEVDYIITSDYVEKSAAPLLIWKNPKRSSLIHIAKEVQSVPQKPKGSHDIDPERFEKDNKAVR
        MSIK   K LPDLSKLEPL G+NYRRWSQKLLIFFEQLEVDYI+T+D             +   SS I I   V +V ++ K    IDPE++ KDNK VR
Subjt:  MSIK---KHLPDLSKLEPLGGSNYRRWSQKLLIFFEQLEVDYIITSDYVEKSAAPLLIWKNPKRSSLIHIAKEVQSVPQKPKGSHDIDPERFEKDNKAVR

Query:  GHLLNHMNDSLFE-------------------------------------------PV--RCSEYENLVANILTEGMKMCEILQANVLLEKFPSSWSDYR
         HLLNHM+D +F+                                           PV  +  EYENLVAN+L+EGMKMCEILQANVLLEKFP SW+DYR
Subjt:  GHLLNHMNDSLFE-------------------------------------------PV--RCSEYENLVANILTEGMKMCEILQANVLLEKFPSSWSDYR

Query:  NHLKHKKKDLTLQELISHMRIEEAT---GKKISWNLNPEFSNANLVES
        NHLKHKKKDL LQELISHMR EEA     K  S NLN    NANLVES
Subjt:  NHLKHKKKDLTLQELISHMRIEEAT---GKKISWNLNPEFSNANLVES

A0A5A7U9X9 Ty1-copia retrotransposon protein

4.3e-51

52.42

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Query:  MSIK---KHLPDLSKLEPLGGSNYRRWSQKLLIFFEQLEVDYIITSDYVEKSAAPLLIWKNPKRSSLIHIAKEVQSVPQKPKGSHDIDPERFEKDNKAVR
        MSIK   K LPDLSKLEPL G+NYRRWSQKLLIFFEQLEVDY++T+D             +   SS   +     +V  + K    IDPE++ KDNK VR
Subjt:  MSIK---KHLPDLSKLEPLGGSNYRRWSQKLLIFFEQLEVDYIITSDYVEKSAAPLLIWKNPKRSSLIHIAKEVQSVPQKPKGSHDIDPERFEKDNKAVR

Query:  GHLLNHMNDSLFE-------------------------------------------PV--RCSEYENLVANILTEGMKMCEILQANVLLEKFPSSWSDYR
        GHLLNHM+D +F+                                           PV  +  EYENLVAN+L+EGMKMCEILQANVLLEKFP SW+DYR
Subjt:  GHLLNHMNDSLFE-------------------------------------------PV--RCSEYENLVANILTEGMKMCEILQANVLLEKFPSSWSDYR

Query:  NHLKHKKKDLTLQELISHMRIEEAT---GKKISWNLNPEFSNANLVES
        NHLKHKKKDL LQELISHMR EEA     K  S NLN    NANLVES
Subjt:  NHLKHKKKDLTLQELISHMRIEEAT---GKKISWNLNPEFSNANLVES

A0A5D3BZI1 Ty1-copia retrotransposon protein

4.3e-51

52.42

Show/hide

Query:  MSIK---KHLPDLSKLEPLGGSNYRRWSQKLLIFFEQLEVDYIITSDYVEKSAAPLLIWKNPKRSSLIHIAKEVQSVPQKPKGSHDIDPERFEKDNKAVR
        MSIK   K LPDLSKLEPL G+NYRRWSQKLLIFFEQLEVDY++T+D             +   SS   +     +V  + K    IDPE++ KDNK VR
Subjt:  MSIK---KHLPDLSKLEPLGGSNYRRWSQKLLIFFEQLEVDYIITSDYVEKSAAPLLIWKNPKRSSLIHIAKEVQSVPQKPKGSHDIDPERFEKDNKAVR

Query:  GHLLNHMNDSLFE-------------------------------------------PV--RCSEYENLVANILTEGMKMCEILQANVLLEKFPSSWSDYR
        GHLLNHM+D +F+                                           PV  +  EYENLVAN+L+EGMKMCEILQANVLLEKFP SW+DYR
Subjt:  GHLLNHMNDSLFE-------------------------------------------PV--RCSEYENLVANILTEGMKMCEILQANVLLEKFPSSWSDYR

Query:  NHLKHKKKDLTLQELISHMRIEEAT---GKKISWNLNPEFSNANLVES
        NHLKHKKKDL LQELISHMR EEA     K  S NLN    NANLVES
Subjt:  NHLKHKKKDLTLQELISHMRIEEAT---GKKISWNLNPEFSNANLVES

A0A5D3C1A6 Ty1-copia retrotransposon protein

6.6e-52

53.63

Show/hide

Query:  MSIK---KHLPDLSKLEPLGGSNYRRWSQKLLIFFEQLEVDYIITSDYVEKSAAPLLIWKNPKRSSLIHIAKEVQSVPQKPKGSHDIDPERFEKDNKAVR
        MSIK   K LPDLSKLEPL G+NYRRWSQKLLIFFEQLEVDYI+T+D             +   SS I I   V +V ++ K    IDPE++ KDNK VR
Subjt:  MSIK---KHLPDLSKLEPLGGSNYRRWSQKLLIFFEQLEVDYIITSDYVEKSAAPLLIWKNPKRSSLIHIAKEVQSVPQKPKGSHDIDPERFEKDNKAVR

Query:  GHLLNHMNDSLFE-------------------------------------------PV--RCSEYENLVANILTEGMKMCEILQANVLLEKFPSSWSDYR
         HLLNHM+D +F+                                           PV  +  EYENLVAN+L+EGMKMCEILQANVLLEKFP SW+DYR
Subjt:  GHLLNHMNDSLFE-------------------------------------------PV--RCSEYENLVANILTEGMKMCEILQANVLLEKFPSSWSDYR

Query:  NHLKHKKKDLTLQELISHMRIEEAT---GKKISWNLNPEFSNANLVES
        NHLKHKKKDL LQELISHMR EEA     K  S NLN    NANLVES
Subjt:  NHLKHKKKDLTLQELISHMRIEEAT---GKKISWNLNPEFSNANLVES

A0A5D3DSQ3 Ty1-copia retrotransposon protein

1.2e-50

52.42

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Query:  MSIK---KHLPDLSKLEPLGGSNYRRWSQKLLIFFEQLEVDYIITSDYVEKSAAPLLIWKNPKRSSLIHIAKEVQSVPQKPKGSHDIDPERFEKDNKAVR
        MSIK   K LPDLSKLEPL G+NYRRWSQKLLIFFEQLEVDY++T+D             +   SS   +     +V  + K    IDPE++ KDNK VR
Subjt:  MSIK---KHLPDLSKLEPLGGSNYRRWSQKLLIFFEQLEVDYIITSDYVEKSAAPLLIWKNPKRSSLIHIAKEVQSVPQKPKGSHDIDPERFEKDNKAVR

Query:  GHLLNHMNDSLFE-------------------------------------------PV--RCSEYENLVANILTEGMKMCEILQANVLLEKFPSSWSDYR
        GHLLNHM+D +F+                                           PV  +  EYENLVAN+L+EGMKMCEILQANVLLEKFP SW+DYR
Subjt:  GHLLNHMNDSLFE-------------------------------------------PV--RCSEYENLVANILTEGMKMCEILQANVLLEKFPSSWSDYR

Query:  NHLKHKKKDLTLQELISHMRIEEAT---GKKISWNLNPEFSNANLVES
        NHLKHKKKDL LQELISHMR EEA     K  S NLN    NANLVES
Subjt:  NHLKHKKKDLTLQELISHMRIEEAT---GKKISWNLNPEFSNANLVES

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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atgtccatcaagaagcatcttccagatctatccaagctagaacctcttggtggttctaactaccgtcgctggtctcagaagctgctcattttcttcgaacaactggaggt
cgactacattataacctccgattatgtggagaaatcagcagcaccgttgctgatctggaaaaatccaaagaggtccagcctgatccacatagctaaggaggttcagtcag
tccctcaaaaaccaaagggcagtcatgacatcgatccagaaagattcgagaaGGACAACAAGGCGGTTCGGGGTCATCTTCTGAACCACATGAACGACTCACTGTTCGAA
CCTGTTCGTTGTTCCGAGTACGAGAATCTAGTGGCAAACATTCTGACAGAAGGTATGAAGATGTGCGAAATTCTCCAGGCGAATGTCTTGCTCGAAAAATTCCCTTCTTC
ATGGAGCGACTACCGCAATCATCTAAAGCACAAGAAGAAGGACCTGACATTGCAAGAGTTGATCAGTCACATGCGAATTGAAGAAGCAACAGGCAAAAAGATAAGTTGGA
ATCTAAATCCTGAATTCAGTAATGCTAACCTAGTTGAATCTTTGCTGCATCAAAAGACAGACTTGATGAAGCATGATGTGATTGTGAAGGAGTGGCCGCCTTCTATGAAA
GAGTGTAATGGATCTCTTTCTAGAGCTTTCATGATAACCCAAGATTCAGATAGAGTTAGAGAAGGCAGGGTCCAGAGAATTCAGAAGGATCCGAGATTCAGAATTCAAAG
GATTCAAGACTCATCATCAAGCCAACAGGCCAATCCAAAAGAACATCAAGCCAGCAGGCCGATCATCCAAGGGGATCAACAAGTCAACAAGCCGATCCAAGAGATCATTA
AGCCAGTAGGTCGATCATCCAAGAAGATCAACAAGCCAACAAGCCGATCTAAGAGATCATCAAGCAACCAGGTCGATCCAAGAGATCATCAAGCCAACAGGTCGATCCAA
GAGATCATCAACCTAGCAGGCTGA

mRNA sequence

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Protein sequence

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MSIKKHLPDLSKLEPLGGSNYRRWSQKLLIFFEQLEVDYIITSDYVEKSAAPLLIWKNPKRSSLIHIAKEVQSVPQKPKGSHDIDPERFEKDNKAVRGHLLNHMNDSLFE
PVRCSEYENLVANILTEGMKMCEILQANVLLEKFPSSWSDYRNHLKHKKKDLTLQELISHMRIEEATGKKISWNLNPEFSNANLVESLLHQKTDLMKHDVIVKEWPPSMK
ECNGSLSRAFMITQDSDRVREGRVQRIQKDPRFRIQRIQDSSSSQQANPKEHQASRPIIQGDQQVNKPIQEIIKPVGRSSKKINKPTSRSKRSSSNQVDPRDHQANRSIQ
EIINLAG

Spg003173 (gene) of Sponge gourd (cylindrica) v1 genome