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Spg003176 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003176
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRBR-type E3 ubiquitin transferase
Genome locationscaffold4:33187290..33189842
RNA-Seq ExpressionSpg003176
SyntenySpg003176
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CDP04163.1 unnamed protein product [Coffea canephora]7.4e-08100Show/hide
Query:  CTEEAHRPVDCGTVARWILKNSAESENMN
        CTEEAHRPVDCGTVARWILKNSAESENMN
Subjt:  CTEEAHRPVDCGTVARWILKNSAESENMN

KAF3337891.1 E3 ubiquitin-protein ligase ARI7 [Carex littledalei]7.4e-08100Show/hide
Query:  CTEEAHRPVDCGTVARWILKNSAESENMN
        CTEEAHRPVDCGTVARWILKNSAESENMN
Subjt:  CTEEAHRPVDCGTVARWILKNSAESENMN

XP_027184942.1 probable E3 ubiquitin-protein ligase ARI8 [Coffea eugenioides]7.4e-08100Show/hide
Query:  CTEEAHRPVDCGTVARWILKNSAESENMN
        CTEEAHRPVDCGTVARWILKNSAESENMN
Subjt:  CTEEAHRPVDCGTVARWILKNSAESENMN

XP_028072506.1 probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Camellia sinensis]9.6e-0893.33Show/hide
Query:  ECTEEAHRPVDCGTVARWILKNSAESENMN
        +CTEEAHRPVDCGTVA+WILKNSAESENMN
Subjt:  ECTEEAHRPVDCGTVARWILKNSAESENMN

XP_042489828.1 probable E3 ubiquitin-protein ligase ARI8 [Macadamia integrifolia]7.4e-08100Show/hide
Query:  CTEEAHRPVDCGTVARWILKNSAESENMN
        CTEEAHRPVDCGTVARWILKNSAESENMN
Subjt:  CTEEAHRPVDCGTVARWILKNSAESENMN

TrEMBL top hitse value%identityAlignment
A0A068U975 RBR-type E3 ubiquitin transferase3.6e-08100Show/hide
Query:  CTEEAHRPVDCGTVARWILKNSAESENMN
        CTEEAHRPVDCGTVARWILKNSAESENMN
Subjt:  CTEEAHRPVDCGTVARWILKNSAESENMN

A0A2N9ETZ5 Uncharacterized protein6.1e-0890.91Show/hide
Query:  WQPECTEEAHRPVDCGTVARWILKNSAESENMN
        WQ  CTEEAHRPVDCGTVA+WILKNSAESENMN
Subjt:  WQPECTEEAHRPVDCGTVARWILKNSAESENMN

A0A2N9HHA6 RING-type domain-containing protein6.1e-0890.91Show/hide
Query:  WQPECTEEAHRPVDCGTVARWILKNSAESENMN
        WQ  CTEEAHRPVDCGTVA+WILKNSAESENMN
Subjt:  WQPECTEEAHRPVDCGTVARWILKNSAESENMN

A0A2N9HQA4 RING-type domain-containing protein6.1e-0890.91Show/hide
Query:  WQPECTEEAHRPVDCGTVARWILKNSAESENMN
        WQ  CTEEAHRPVDCGTVA+WILKNSAESENMN
Subjt:  WQPECTEEAHRPVDCGTVARWILKNSAESENMN

A0A2N9HSK1 RING-type domain-containing protein6.1e-0890.91Show/hide
Query:  WQPECTEEAHRPVDCGTVARWILKNSAESENMN
        WQ  CTEEAHRPVDCGTVA+WILKNSAESENMN
Subjt:  WQPECTEEAHRPVDCGTVARWILKNSAESENMN

SwissProt top hitse value%identityAlignment
P0C8K8 Putative E3 ubiquitin-protein ligase ARI63.4e-0882.76Show/hide
Query:  CTEEAHRPVDCGTVARWILKNSAESENMN
        C+EEAHRPVDC TV +WILKNS ESENMN
Subjt:  CTEEAHRPVDCGTVARWILKNSAESENMN

Q84RR0 Probable E3 ubiquitin-protein ligase ARI72.4e-0989.66Show/hide
Query:  CTEEAHRPVDCGTVARWILKNSAESENMN
        CTEEAHRPVDC TV++WILKNSAESENMN
Subjt:  CTEEAHRPVDCGTVARWILKNSAESENMN

Q8L829 Probable E3 ubiquitin-protein ligase ARI54.1e-0989.66Show/hide
Query:  CTEEAHRPVDCGTVARWILKNSAESENMN
        CTEEAHRPVDC TV +WILKNSAESENMN
Subjt:  CTEEAHRPVDCGTVARWILKNSAESENMN

Q8W468 Probable E3 ubiquitin-protein ligase ARI81.5e-0882.76Show/hide
Query:  CTEEAHRPVDCGTVARWILKNSAESENMN
        C EEAHRPVDC TV++W+LKNSAESENMN
Subjt:  CTEEAHRPVDCGTVARWILKNSAESENMN

Q9SKC2 Probable E3 ubiquitin-protein ligase ARI115.5e-0668.97Show/hide
Query:  CTEEAHRPVDCGTVARWILKNSAESENMN
        C E+AH PVDC TV++W+LKN  ESENMN
Subjt:  CTEEAHRPVDCGTVARWILKNSAESENMN

Arabidopsis top hitse value%identityAlignment
AT1G05890.1 RING/U-box superfamily protein2.9e-1089.66Show/hide
Query:  CTEEAHRPVDCGTVARWILKNSAESENMN
        CTEEAHRPVDC TV +WILKNSAESENMN
Subjt:  CTEEAHRPVDCGTVARWILKNSAESENMN

AT1G05890.2 RING/U-box superfamily protein2.9e-1089.66Show/hide
Query:  CTEEAHRPVDCGTVARWILKNSAESENMN
        CTEEAHRPVDC TV +WILKNSAESENMN
Subjt:  CTEEAHRPVDCGTVARWILKNSAESENMN

AT1G65430.1 IBR domain-containing protein1.1e-0982.76Show/hide
Query:  CTEEAHRPVDCGTVARWILKNSAESENMN
        C EEAHRPVDC TV++W+LKNSAESENMN
Subjt:  CTEEAHRPVDCGTVARWILKNSAESENMN

AT2G31510.1 IBR domain-containing protein1.7e-1089.66Show/hide
Query:  CTEEAHRPVDCGTVARWILKNSAESENMN
        CTEEAHRPVDC TV++WILKNSAESENMN
Subjt:  CTEEAHRPVDCGTVARWILKNSAESENMN

AT2G31780.1 RING/U-box superfamily protein3.9e-0768.97Show/hide
Query:  CTEEAHRPVDCGTVARWILKNSAESENMN
        C E+AH PVDC TV++W+LKN  ESENMN
Subjt:  CTEEAHRPVDCGTVARWILKNSAESENMN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACGGTTGAAAGTTATCAAGGTCGCAGGCAGAGTCGCAGGTCATGTCGATGAATGTGGGTTGCAGCGAGGACGAAGGTACACGAACCAAGCTGGGACGATGATGCG
AGCTGACGACGGGAGTGACGGCAGTGGAAGAATCAACGGAGAGAAGAATTCGTACGAGCATGGTTCGTTGGCAAGAGTGTTGAAGGAGAATGCAAGCCAATTGAGAGACT
TCCAAGTAAGAGCCAAGGAGTGGGAGGAGTATCTACTTTGTTCACTGATTTTTGCTCGACTTCCTCGAGAATTCTCATCAAAAGCTATCAAGAAAATCTTTTTGTCAATG
GATATCGATCTGATGGAGTGGTGGTGGTGGTGGTGGTGTTCATGGCAGCCGGAGTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGGCACTGTAGCTAGATGGATATT
GAAGAATAGTGCCGAGTCAGAAAATATGAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGACACGGTTGAAAGTTATCAAGGTCGCAGGCAGAGTCGCAGGTCATGTCGATGAATGTGGGTTGCAGCGAGGACGAAGGTACACGAACCAAGCTGGGACGATGATGCG
AGCTGACGACGGGAGTGACGGCAGTGGAAGAATCAACGGAGAGAAGAATTCGTACGAGCATGGTTCGTTGGCAAGAGTGTTGAAGGAGAATGCAAGCCAATTGAGAGACT
TCCAAGTAAGAGCCAAGGAGTGGGAGGAGTATCTACTTTGTTCACTGATTTTTGCTCGACTTCCTCGAGAATTCTCATCAAAAGCTATCAAGAAAATCTTTTTGTCAATG
GATATCGATCTGATGGAGTGGTGGTGGTGGTGGTGGTGTTCATGGCAGCCGGAGTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGGCACTGTAGCTAGATGGATATT
GAAGAATAGTGCCGAGTCAGAAAATATGAACTGA
Protein sequenceShow/hide protein sequence
MTRLKVIKVAGRVAGHVDECGLQRGRRYTNQAGTMMRADDGSDGSGRINGEKNSYEHGSLARVLKENASQLRDFQVRAKEWEEYLLCSLIFARLPREFSSKAIKKIFLSM
DIDLMEWWWWWWCSWQPECTEEAHRPVDCGTVARWILKNSAESENMN