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Spg003201 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003201
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold4:30706360..30710129
RNA-Seq ExpressionSpg003201
SyntenySpg003201
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067918.1 hypothetical protein E6C27_scaffold138G00850 [Cucumis melo var. makuwa]2.3e-1954.35Show/hide
Query:  KKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFALSVWSLFFEVFNFQFAGYRRCSEMIEEFLLHPSFQEKR
        ++V+FF+WQV+LGRVNT +RL R  +  V P CC+LCQK EEDLDHL   C +A +VWS F +     FAG R     IEEFLLH SF+++R
Subjt:  KKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFALSVWSLFFEVFNFQFAGYRRCSEMIEEFLLHPSFQEKR

TYK04295.1 serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X2 [Cucumis melo var. makuwa]4.0e-1954.35Show/hide
Query:  KKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFALSVWSLFFEVFNFQFAGYRRCSEMIEEFLLHPSFQEKR
        ++V+FF+WQV+LGRVNT +RL R  +  V P CC+LCQK EEDLDHL   C +A +VWS F +     FAG R     IEEFLLH SF+++R
Subjt:  KKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFALSVWSLFFEVFNFQFAGYRRCSEMIEEFLLHPSFQEKR

TYK06215.1 peroxin Pex14 isoform X3 [Cucumis melo var. makuwa]3.7e-1753.19Show/hide
Query:  VPKKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFALSVWSLFFEVFNFQFAGYRRCSEMIEEFLLHPSFQEKR
        VPKKV+FF+WQ +LG+VNT +RL R  S L  P CC L QK EEDLDH  W C +A +VWS F  + +  FAG       IEEFLL   F++KR
Subjt:  VPKKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFALSVWSLFFEVFNFQFAGYRRCSEMIEEFLLHPSFQEKR

TYK11201.1 SIL1 [Cucumis melo var. makuwa]1.4e-1950Show/hide
Query:  NKPLLVKVPKKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFALSVWSLFFEVFNFQFAGYRRCSEMIEEFLLHPSFQEK
        + P+ +KVPKK +FF+ QV+LG +NT +RL + M+ LV P  C LCQK +EDLD+L W C    +VW+ F + F+  F G R     IEEFLLHP F+EK
Subjt:  NKPLLVKVPKKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFALSVWSLFFEVFNFQFAGYRRCSEMIEEFLLHPSFQEK

TYK29954.1 reverse transcriptase [Cucumis melo var. makuwa]3.7e-1752.27Show/hide
Query:  VKVPKKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFALSVWSLFFEVFNFQFAGYRRCSEMIEEFLL
        +KV KKV+FF WQV+L R N  +RL R   P    +CCILC+K +EDLDHLLW C +A +VW  F + F+ + AG R   + IEEFLL
Subjt:  VKVPKKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFALSVWSLFFEVFNFQFAGYRRCSEMIEEFLL

TrEMBL top hitse value%identityAlignment
A0A5A7VJE4 zf-RVT domain-containing protein1.1e-1954.35Show/hide
Query:  KKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFALSVWSLFFEVFNFQFAGYRRCSEMIEEFLLHPSFQEKR
        ++V+FF+WQV+LGRVNT +RL R  +  V P CC+LCQK EEDLDHL   C +A +VWS F +     FAG R     IEEFLLH SF+++R
Subjt:  KKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFALSVWSLFFEVFNFQFAGYRRCSEMIEEFLLHPSFQEKR

A0A5D3BYR2 Serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X21.9e-1954.35Show/hide
Query:  KKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFALSVWSLFFEVFNFQFAGYRRCSEMIEEFLLHPSFQEKR
        ++V+FF+WQV+LGRVNT +RL R  +  V P CC+LCQK EEDLDHL   C +A +VWS F +     FAG R     IEEFLLH SF+++R
Subjt:  KKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFALSVWSLFFEVFNFQFAGYRRCSEMIEEFLLHPSFQEKR

A0A5D3C1E6 Uncharacterized protein1.8e-1741.04Show/hide
Query:  FLWKGVEEGKGVHLVSWEIVGKPVSLGGLELGNMRTRNKPLLVKVPKKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFA
        FLW+GV+EG+G HLVSWE+VG+P+  G                         +W              R  + LV+P CC+LC+K EEDLDHL W   +A
Subjt:  FLWKGVEEGKGVHLVSWEIVGKPVSLGGLELGNMRTRNKPLLVKVPKKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFA

Query:  LSVWSLFFEVFNFQFAGYRRCSEMIEEFLLHPSF
         +VWS F +V    FAG R     IEEFLLH SF
Subjt:  LSVWSLFFEVFNFQFAGYRRCSEMIEEFLLHPSF

A0A5D3C4A7 Peroxin Pex14 isoform X31.8e-1753.19Show/hide
Query:  VPKKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFALSVWSLFFEVFNFQFAGYRRCSEMIEEFLLHPSFQEKR
        VPKKV+FF+WQ +LG+VNT +RL R  S L  P CC L QK EEDLDH  W C +A +VWS F  + +  FAG       IEEFLL   F++KR
Subjt:  VPKKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFALSVWSLFFEVFNFQFAGYRRCSEMIEEFLLHPSFQEKR

A0A5D3CHC7 SIL16.6e-2050Show/hide
Query:  NKPLLVKVPKKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFALSVWSLFFEVFNFQFAGYRRCSEMIEEFLLHPSFQEK
        + P+ +KVPKK +FF+ QV+LG +NT +RL + M+ LV P  C LCQK +EDLD+L W C    +VW+ F + F+  F G R     IEEFLLHP F+EK
Subjt:  NKPLLVKVPKKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFALSVWSLFFEVFNFQFAGYRRCSEMIEEFLLHPSFQEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTTGGAGAAGCTCATTAGGGTTTTTTTTATGGAAAGGGGTTGAAGAAGGAAAAGGGGTGCACTTAGTGAGTTGGGAGATAGTGGGAAAACCTGTGAGCCTCGGGGG
TCTAGAGCTGGGGAACATGAGAACTCGTAACAAACCCTTGCTTGTCAAAGTTCCAAAGAAAGTCCAGTTCTTCGTTTGGCAAGTCATCCTCGGACGAGTTAATACTTTTG
AGAGACTATCGAGAGTGATGTCCCCTTTGGTTGACCCTTCTTGTTGCATTCTTTGTCAGAAGGTAGAGGAAGATCTTGATCATTTGCTGTGGTGTTGTGATTTTGCTCTC
TCAGTCTGGAGCCTCTTCTTTGAGGTTTTCAATTTTCAGTTTGCTGGTTATCGTCGTTGCAGTGAGATGATTGAGGAGTTCCTCCTCCATCCATCGTTTCAAGAGAAACG
AAGGCAATTGAAAGGCAGAAAAGGCGAGCGCCTTATTGAAGGTGCTCGCCCTGGGTACTTGCAAGGCGTGAAGGCCTCTCCTCGCCTCGCCTCTCGCCATAGGCGAGCGC
CTGGCTGCGCCTCCACAACACTATTCAAGAAAACTGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTTGGAGAAGCTCATTAGGGTTTTTTTTATGGAAAGGGGTTGAAGAAGGAAAAGGGGTGCACTTAGTGAGTTGGGAGATAGTGGGAAAACCTGTGAGCCTCGGGGG
TCTAGAGCTGGGGAACATGAGAACTCGTAACAAACCCTTGCTTGTCAAAGTTCCAAAGAAAGTCCAGTTCTTCGTTTGGCAAGTCATCCTCGGACGAGTTAATACTTTTG
AGAGACTATCGAGAGTGATGTCCCCTTTGGTTGACCCTTCTTGTTGCATTCTTTGTCAGAAGGTAGAGGAAGATCTTGATCATTTGCTGTGGTGTTGTGATTTTGCTCTC
TCAGTCTGGAGCCTCTTCTTTGAGGTTTTCAATTTTCAGTTTGCTGGTTATCGTCGTTGCAGTGAGATGATTGAGGAGTTCCTCCTCCATCCATCGTTTCAAGAGAAACG
AAGGCAATTGAAAGGCAGAAAAGGCGAGCGCCTTATTGAAGGTGCTCGCCCTGGGTACTTGCAAGGCGTGAAGGCCTCTCCTCGCCTCGCCTCTCGCCATAGGCGAGCGC
CTGGCTGCGCCTCCACAACACTATTCAAGAAAACTGCTTAG
Protein sequenceShow/hide protein sequence
MLWRSSLGFFLWKGVEEGKGVHLVSWEIVGKPVSLGGLELGNMRTRNKPLLVKVPKKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFAL
SVWSLFFEVFNFQFAGYRRCSEMIEEFLLHPSFQEKRRQLKGRKGERLIEGARPGYLQGVKASPRLASRHRRAPGCASTTLFKKTA