; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg003209 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003209
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold4:33076882..33079875
RNA-Seq ExpressionSpg003209
SyntenySpg003209
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]7.1e-1730.13Show/hide
Query:  EKRRSAKTAESEARAANAEARAAEAEAKKD--NPPWKTELLNTLKELGNPQGYLQKLKDSGAQNLEELIDQVD---------------------PPFTEE
        +K + A   ES  +  N + +  + E   D  + P+  E++   +   +   Y+ +      Q +E L D V                      P    E
Subjt:  EKRRSAKTAESEARAANAEARAAEAEAKKD--NPPWKTELLNTLKELGNPQGYLQKLKDSGAQNLEELIDQVD---------------------PPFTEE

Query:  FVSRAHEYMSAEELFKSKKSEREHKRSSSSDHDSRKDKKQRTDDHGRGRADHGRGRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVHRKLKSNSD
         +SRA  YMSA E F SK+ E   KR+          K++R+ D  +G     R R  + +  +KFEKYT T++P EQ+LMEI+N  LL    ++ ++S 
Subjt:  FVSRAHEYMSAEELFKSKKSEREHKRSSSSDHDSRKDKKQRTDDHGRGRADHGRGRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVHRKLKSNSD

Query:  NRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRRPRQRQGWTSTGNPLRTKADSPMVGAEARV-KDNILENTLSLSLGNSSFLY
         R K +YCLFH DHGH+T++C  LK+E+E LI  GYLKE+  + +A Q     +    S    +RT    P+     R  K ++ E   S        +Y
Subjt:  NRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRRPRQRQGWTSTGNPLRTKADSPMVGAEARV-KDNILENTLSLSLGNSSFLY

Query:  ST
        +T
Subjt:  ST

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]7.3e-2241.01Show/hide
Query:  PPFTEEFVSRAHEYMSAEELFKSKKSEREHKRSSSSDHDSRKDKKQRTDDHGRGRADHGRGRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVHRK
        P    E +SRA  YMSA E F SK+ E + KR+          K++R+ D  +G     R R  + +  +KFEKYTPT++P EQ+LMEI++  LL    +
Subjt:  PPFTEEFVSRAHEYMSAEELFKSKKSEREHKRSSSSDHDSRKDKKQRTDDHGRGRADHGRGRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVHRK

Query:  LKSNSDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQR----RPRQRQGWTSTGNPLRTKA
        +K++S  R K +YCLFHRDHGH+T++C  LK+E+E LIR GYLKE+  + +A Q     +   R+  T  G P+  ++
Subjt:  LKSNSDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQR----RPRQRQGWTSTGNPLRTKA

XP_022159192.1 uncharacterized protein LOC111025612 [Momordica charantia]7.5e-1940Show/hide
Query:  PPFTEEFVSRAHEYMSAEELF------KSKKSEREHKRSSSSDHDSRKDKKQRTDDHGRGRADHGRGRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNL
        P    E +SRA +YMSAEE F      + K+++++ +RS      S+ +K+ R      G+ D  R          KFEKYTPT++P EQ+LMEI++  L
Subjt:  PPFTEEFVSRAHEYMSAEELF------KSKKSEREHKRSSSSDHDSRKDKKQRTDDHGRGRADHGRGRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNL

Query:  LNVHRKLKSNSDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRRPRQRQGWT
        L     +K+  + R K +YCLFHRDHGH+T +C  LK+E+E LIR GYLKE+    +A   R    +  T
Subjt:  LNVHRKLKSNSDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRRPRQRQGWT

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]6.8e-2039.13Show/hide
Query:  PPFTEEFVSRAHEYMSAEELFKSKKSEREHKRSSSSDHDSRKDKKQRTDDHGRGRADHGRGRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVHRK
        P    E +SRA  YMSA E F SK+ E + KR+          K++R+ D  +G     R R  + +  +KFEKYTPT++P EQ+LMEI++  LL    +
Subjt:  PPFTEEFVSRAHEYMSAEELFKSKKSEREHKRSSSSDHDSRKDKKQRTDDHGRGRADHGRGRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVHRK

Query:  LKSNSDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRRPRQRQGWTSTGNPLRTKADSPMVGAEAR
        +K  S  R K +YCLFHRDH H+T++   LK+E+E LIR GYL+E+  + +A Q    ++    S    +RT    P+    AR
Subjt:  LKSNSDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRRPRQRQGWTSTGNPLRTKADSPMVGAEAR

XP_030948866.1 uncharacterized protein LOC115972746 [Quercus lobata]3.9e-1539.61Show/hide
Query:  DPPFTEEFVSRAHEYMSAEELFKSKKSEREHKRSSSSDHDSRKDKKQRTDDHGRGRADHGRGRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVHR
        DP    + + RA +YM+AE+   + + E+  KR        R  K  RT D    + D  R RP  G    +F  +TP + P +Q+LM+I+N   L    
Subjt:  DPPFTEEFVSRAHEYMSAEELFKSKKSEREHKRSSSSDHDSRKDKKQRTDDHGRGRADHGRGRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVHR

Query:  KLKSNSDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEAD
        KLK N + R + +YC FHRDHGH T NC  LK +IEALIR G L+ F +K   D
Subjt:  KLKSNSDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEAD

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128053.4e-1730.13Show/hide
Query:  EKRRSAKTAESEARAANAEARAAEAEAKKD--NPPWKTELLNTLKELGNPQGYLQKLKDSGAQNLEELIDQVD---------------------PPFTEE
        +K + A   ES  +  N + +  + E   D  + P+  E++   +   +   Y+ +      Q +E L D V                      P    E
Subjt:  EKRRSAKTAESEARAANAEARAAEAEAKKD--NPPWKTELLNTLKELGNPQGYLQKLKDSGAQNLEELIDQVD---------------------PPFTEE

Query:  FVSRAHEYMSAEELFKSKKSEREHKRSSSSDHDSRKDKKQRTDDHGRGRADHGRGRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVHRKLKSNSD
         +SRA  YMSA E F SK+ E   KR+          K++R+ D  +G     R R  + +  +KFEKYT T++P EQ+LMEI+N  LL    ++ ++S 
Subjt:  FVSRAHEYMSAEELFKSKKSEREHKRSSSSDHDSRKDKKQRTDDHGRGRADHGRGRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVHRKLKSNSD

Query:  NRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRRPRQRQGWTSTGNPLRTKADSPMVGAEARV-KDNILENTLSLSLGNSSFLY
         R K +YCLFH DHGH+T++C  LK+E+E LI  GYLKE+  + +A Q     +    S    +RT    P+     R  K ++ E   S        +Y
Subjt:  NRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRRPRQRQGWTSTGNPLRTKADSPMVGAEARV-KDNILENTLSLSLGNSSFLY

Query:  ST
        +T
Subjt:  ST

A0A6J1DWY0 uncharacterized protein LOC1110252933.5e-2241.01Show/hide
Query:  PPFTEEFVSRAHEYMSAEELFKSKKSEREHKRSSSSDHDSRKDKKQRTDDHGRGRADHGRGRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVHRK
        P    E +SRA  YMSA E F SK+ E + KR+          K++R+ D  +G     R R  + +  +KFEKYTPT++P EQ+LMEI++  LL    +
Subjt:  PPFTEEFVSRAHEYMSAEELFKSKKSEREHKRSSSSDHDSRKDKKQRTDDHGRGRADHGRGRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVHRK

Query:  LKSNSDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQR----RPRQRQGWTSTGNPLRTKA
        +K++S  R K +YCLFHRDHGH+T++C  LK+E+E LIR GYLKE+  + +A Q     +   R+  T  G P+  ++
Subjt:  LKSNSDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQR----RPRQRQGWTSTGNPLRTKA

A0A6J1DYL6 uncharacterized protein LOC1110257853.3e-2039.13Show/hide
Query:  PPFTEEFVSRAHEYMSAEELFKSKKSEREHKRSSSSDHDSRKDKKQRTDDHGRGRADHGRGRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVHRK
        P    E +SRA  YMSA E F SK+ E + KR+          K++R+ D  +G     R R  + +  +KFEKYTPT++P EQ+LMEI++  LL    +
Subjt:  PPFTEEFVSRAHEYMSAEELFKSKKSEREHKRSSSSDHDSRKDKKQRTDDHGRGRADHGRGRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVHRK

Query:  LKSNSDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRRPRQRQGWTSTGNPLRTKADSPMVGAEAR
        +K  S  R K +YCLFHRDH H+T++   LK+E+E LIR GYL+E+  + +A Q    ++    S    +RT    P+    AR
Subjt:  LKSNSDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRRPRQRQGWTSTGNPLRTKADSPMVGAEAR

A0A6J1DZ52 uncharacterized protein LOC1110256123.7e-1940Show/hide
Query:  PPFTEEFVSRAHEYMSAEELF------KSKKSEREHKRSSSSDHDSRKDKKQRTDDHGRGRADHGRGRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNL
        P    E +SRA +YMSAEE F      + K+++++ +RS      S+ +K+ R      G+ D  R          KFEKYTPT++P EQ+LMEI++  L
Subjt:  PPFTEEFVSRAHEYMSAEELF------KSKKSEREHKRSSSSDHDSRKDKKQRTDDHGRGRADHGRGRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNL

Query:  LNVHRKLKSNSDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRRPRQRQGWT
        L     +K+  + R K +YCLFHRDHGH+T +C  LK+E+E LIR GYLKE+    +A   R    +  T
Subjt:  LNVHRKLKSNSDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRRPRQRQGWT

A0A7N2N9G0 Reverse transcriptase1.4e-1537.66Show/hide
Query:  DPPFTEEFVSRAHEYMSAEELFKSKKSEREHKRSSSSDHDSRKDKKQRTDDHGRGRADHGRGRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVHR
        DP    E + RA +YM+AE+   +++ +   +     +   +  KK RT D    R +  R RP  G    +F  +TP + P +Q+LM+I++   L    
Subjt:  DPPFTEEFVSRAHEYMSAEELFKSKKSEREHKRSSSSDHDSRKDKKQRTDDHGRGRADHGRGRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVHR

Query:  KLKSNSDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEAD
        KLKS+ + R + +YC FHRDHGH T +C  LK +IEALIR G L+ F +K  AD
Subjt:  KLKSNSDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEAD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGGAGCTGACGAGGACAACCGGGCGGAGATAGGACTAGGAAGCGACCCAGAGGAAGACCAGCCAACGGGCCGGGCCAAAATGGCCCGACCCATATGGCCACGTCT
TCCCCCTCATCTACAAATTTACCGTTGGTGGCACGTGAAGGTCAGGATACTTCGCATCCTGGATAAACCTGGTCCTAGCACTACAACCTATGATGAGAAGTTGGTTAGGG
ATCCGAGGAAGGGGAAGGAGCCCATGGAGCACACTGCAGAATCAGAGACGAGATCGAAGGGAAAGAAGACTGACAGCATGACCAGCAAGATCAGGGGGCTCAAACCTACT
GATCGTACAATTTTGAGGAGCCTAGAGTCAATCACACTTAAAGGACGTGACTACACAATTTCTACCTCAAGCTACGGTCATACTAAGATAGACCTGAGGAATCTGATCGA
GGAGAAGCGCAGAAGTGCCAAAACTGCCGAGTCTGAGGCCAGAGCTGCCAATGCTGAAGCCAGGGCTGCCGAGGCCGAGGCCAAGAAAGACAATCCCCCTTGGAAGACCG
AGCTTTTAAACACACTAAAGGAGCTTGGAAATCCACAGGGATACCTGCAGAAGTTAAAGGACTCAGGAGCACAAAACTTGGAAGAATTGATCGACCAAGTTGACCCGCCC
TTCACAGAAGAATTTGTCTCCCGGGCACATGAATACATGAGCGCAGAGGAGTTGTTCAAGTCAAAGAAGTCAGAACGTGAACACAAGAGGTCTTCTTCATCTGACCACGA
CAGTAGGAAGGACAAAAAGCAGCGGACCGACGACCATGGCCGAGGCCGAGCAGACCATGGTCGAGGCCGACCAGACCGAGGCAACTACTTGAAGAAATTTGAGAAGTACA
CCCCCACTTCAATCCCACAGGAGCAGATCTTGATGGAAATACGGAATACAAACTTACTCAACGTGCATAGAAAGCTGAAGTCAAACTCTGATAACAGAGACAAAAGCCAG
TATTGTCTCTTCCATCGAGATCATGGACATTCAACTAGGAACTGCATTCAGCTAAAGGACGAGATTGAAGCACTGATTCGGAATGGATACCTGAAGGAGTTCACCACTAA
GGCCGAGGCGGACCAGAGACGACCCAGGCAAAGACAAGGGTGGACCTCAACTGGAAATCCGTTGAGGACCAAGGCAGACTCTCCTATGGTCGGGGCCGAAGCCAGGGTCA
AGGACAACATTCTGGAGAACACACTAAGCCTTAGCTTAGGGAATTCTAGTTTTCTTTATTCTACTGCACTTATCATAGCCCACGCCACTGCTCACGAGCCTGGACTACCG
AGTCTACCTCACCTCAGAGCTCAAACACTTGCTCAAACACTTCATGTAAGTCAAGCTCACCTGGCGGAGGCCAATACCGAGCACCTCTTGCCAAGGCTGAGCACCTCTTG
CCAAGGCCGAGCACAAACTTTAAAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAGGAGCTGACGAGGACAACCGGGCGGAGATAGGACTAGGAAGCGACCCAGAGGAAGACCAGCCAACGGGCCGGGCCAAAATGGCCCGACCCATATGGCCACGTCT
TCCCCCTCATCTACAAATTTACCGTTGGTGGCACGTGAAGGTCAGGATACTTCGCATCCTGGATAAACCTGGTCCTAGCACTACAACCTATGATGAGAAGTTGGTTAGGG
ATCCGAGGAAGGGGAAGGAGCCCATGGAGCACACTGCAGAATCAGAGACGAGATCGAAGGGAAAGAAGACTGACAGCATGACCAGCAAGATCAGGGGGCTCAAACCTACT
GATCGTACAATTTTGAGGAGCCTAGAGTCAATCACACTTAAAGGACGTGACTACACAATTTCTACCTCAAGCTACGGTCATACTAAGATAGACCTGAGGAATCTGATCGA
GGAGAAGCGCAGAAGTGCCAAAACTGCCGAGTCTGAGGCCAGAGCTGCCAATGCTGAAGCCAGGGCTGCCGAGGCCGAGGCCAAGAAAGACAATCCCCCTTGGAAGACCG
AGCTTTTAAACACACTAAAGGAGCTTGGAAATCCACAGGGATACCTGCAGAAGTTAAAGGACTCAGGAGCACAAAACTTGGAAGAATTGATCGACCAAGTTGACCCGCCC
TTCACAGAAGAATTTGTCTCCCGGGCACATGAATACATGAGCGCAGAGGAGTTGTTCAAGTCAAAGAAGTCAGAACGTGAACACAAGAGGTCTTCTTCATCTGACCACGA
CAGTAGGAAGGACAAAAAGCAGCGGACCGACGACCATGGCCGAGGCCGAGCAGACCATGGTCGAGGCCGACCAGACCGAGGCAACTACTTGAAGAAATTTGAGAAGTACA
CCCCCACTTCAATCCCACAGGAGCAGATCTTGATGGAAATACGGAATACAAACTTACTCAACGTGCATAGAAAGCTGAAGTCAAACTCTGATAACAGAGACAAAAGCCAG
TATTGTCTCTTCCATCGAGATCATGGACATTCAACTAGGAACTGCATTCAGCTAAAGGACGAGATTGAAGCACTGATTCGGAATGGATACCTGAAGGAGTTCACCACTAA
GGCCGAGGCGGACCAGAGACGACCCAGGCAAAGACAAGGGTGGACCTCAACTGGAAATCCGTTGAGGACCAAGGCAGACTCTCCTATGGTCGGGGCCGAAGCCAGGGTCA
AGGACAACATTCTGGAGAACACACTAAGCCTTAGCTTAGGGAATTCTAGTTTTCTTTATTCTACTGCACTTATCATAGCCCACGCCACTGCTCACGAGCCTGGACTACCG
AGTCTACCTCACCTCAGAGCTCAAACACTTGCTCAAACACTTCATGTAAGTCAAGCTCACCTGGCGGAGGCCAATACCGAGCACCTCTTGCCAAGGCTGAGCACCTCTTG
CCAAGGCCGAGCACAAACTTTAAAG
Protein sequenceShow/hide protein sequence
MQGADEDNRAEIGLGSDPEEDQPTGRAKMARPIWPRLPPHLQIYRWWHVKVRILRILDKPGPSTTTYDEKLVRDPRKGKEPMEHTAESETRSKGKKTDSMTSKIRGLKPT
DRTILRSLESITLKGRDYTISTSSYGHTKIDLRNLIEEKRRSAKTAESEARAANAEARAAEAEAKKDNPPWKTELLNTLKELGNPQGYLQKLKDSGAQNLEELIDQVDPP
FTEEFVSRAHEYMSAEELFKSKKSEREHKRSSSSDHDSRKDKKQRTDDHGRGRADHGRGRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVHRKLKSNSDNRDKSQ
YCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRRPRQRQGWTSTGNPLRTKADSPMVGAEARVKDNILENTLSLSLGNSSFLYSTALIIAHATAHEPGLP
SLPHLRAQTLAQTLHVSQAHLAEANTEHLLPRLSTSCQGRAQTLK