; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg003248 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003248
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold4:31413018..31416646
RNA-Seq ExpressionSpg003248
SyntenySpg003248
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]1.1e-2447.52Show/hide
Query:  DSYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSKEEESADQRASVFRRIRPPVSRALVFQRIIVNETEDGSAQPTNSFTRSSVFQRLGM
        + + +P +RKGLGYKSPEP+RITRKGK KV D NHITV+EVD  +E E   QR S F RI P V+R  VF+R+ + E E    Q T++  R SVFQRL +
Subjt:  DSYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSKEEESADQRASVFRRIRPPVSRALVFQRIIVNETEDGSAQPTNSFTRSSVFQRLGM

Query:  FIRGEESTLSTPDVTVPSAFRRLNMLVGEEVSTLSTPDVTR
          + E+    T   T PSAF RL++   +   T   P + R
Subjt:  FIRGEESTLSTPDVTVPSAFRRLNMLVGEEVSTLSTPDVTR

KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]3.8e-2543.53Show/hide
Query:  VVRFQKEATMKGSQEKYDSIEDEKEGWTLVVRREKQKQSYTRKESSLFRDSKRKVKSQRKKGKNKSRRSKPVVEENEDFFCPPQPITLAEYFPRRFLDDS
        VV+F +E   +  QEK  SIE + EGWT+V RR+K+K +  +KE   +R+ +R  K+Q+ K K K+++ K + EE++DF    + +TLA +FP RFL D 
Subjt:  VVRFQKEATMKGSQEKYDSIEDEKEGWTLVVRREKQKQSYTRKESSLFRDSKRKVKSQRKKGKNKSRRSKPVVEENEDFFCPPQPITLAEYFPRRFLDDS

Query:  QGEALEIVTCHIVDVVEDDDVPANSSETVASPGDLSSFSIKDLLSLPQEAKSVLIDALIES--DSYSLPT
        Q E  E+V CH +D +E++ +P  S E      DL  F++ DLLSLPQE K++LI+AL+ S   S S PT
Subjt:  QGEALEIVTCHIVDVVEDDDVPANSSETVASPGDLSSFSIKDLLSLPQEAKSVLIDALIES--DSYSLPT

KAA0042067.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.9e-2644Show/hide
Query:  DSYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSKEEESADQRASVFRRIRPPVSRALVFQRIIVNETEDGSAQPTNSFTRSSVFQRLGM
        + +++P +RKGLGYKSPEP+RITRKGK KV D NHITV+EVD  KE+E   QR S F RI P V+R  VF+R+ + E E    Q T++  R S FQRL M
Subjt:  DSYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSKEEESADQRASVFRRIRPPVSRALVFQRIIVNETEDGSAQPTNSFTRSSVFQRLGM

Query:  FIRGEESTLSTPDVTVPSAFRRLNMLVGEEVSTLSTPDVTRPSAFRRL-----NMPVGEEGGTFSTSDVTRPSVF
          + E+        T PSAF RL+M   + V T       RP  F RL     ++  G    T      +R SV+
Subjt:  FIRGEESTLSTPDVTVPSAFRRLNMLVGEEVSTLSTPDVTRPSAFRRL-----NMPVGEEGGTFSTSDVTRPSVF

KAA0042067.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.8e-1235.09Show/hide
Query:  VVRFQKEATMKGSQEKYDSIEDEKEGWTLVVRREKQKQSYTRKESSLFRDSKRKVKSQRKKGKNKSRRSKPVVEENEDFFCPPQPITLAEYFPRRFLDDS
        VV+F +E   + S+EK  SIE++ EGW +V RR+K+K +  +KES  +R+ +R  K+++ K K K+++ K   +EN                        
Subjt:  VVRFQKEATMKGSQEKYDSIEDEKEGWTLVVRREKQKQSYTRKESSLFRDSKRKVKSQRKKGKNKSRRSKPVVEENEDFFCPPQPITLAEYFPRRFLDDS

Query:  QGEALEIVTCHIVDVVEDDDVPANSSETVASPGDLSSFSIKDLLSLPQEAKSVLIDALIES--DSYSLPTT
            L +V CH ++  E++ +P  S E      DLS F++ DLLSLPQ+ K +LI+AL+ S   S S+PTT
Subjt:  QGEALEIVTCHIVDVVEDDDVPANSSETVASPGDLSSFSIKDLLSLPQEAKSVLIDALIES--DSYSLPTT

KAA0042067.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.7e-2543.53Show/hide
Query:  VVRFQKEATMKGSQEKYDSIEDEKEGWTLVVRREKQKQSYTRKESSLFRDSKRKVKSQRKKGKNKSRRSKPVVEENEDFFCPPQPITLAEYFPRRFLDDS
        VVRF +E   + SQEK   IE++ EGWT+V RR+K+K +  +KE   +R+ ++  K+Q+ K K K+R+ K + EE++DF    + +TLA++FP RFL D 
Subjt:  VVRFQKEATMKGSQEKYDSIEDEKEGWTLVVRREKQKQSYTRKESSLFRDSKRKVKSQRKKGKNKSRRSKPVVEENEDFFCPPQPITLAEYFPRRFLDDS

Query:  QGEALEIVTCHIVDVVEDDDVPANSSETVASPGDLSSFSIKDLLSLPQEAKSVLIDALIES--DSYSLPT
        Q E   +V CH ++ +E++++P  S E      DLS F++ DLLSLPQE K +LI+AL+ S   S S PT
Subjt:  QGEALEIVTCHIVDVVEDDDVPANSSETVASPGDLSSFSIKDLLSLPQEAKSVLIDALIES--DSYSLPT

KAA0046265.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.1e-2744.05Show/hide
Query:  VVRFQKEATMKGSQEKYDSIEDEKEGWTLVVRREKQKQSYTRKESSLFRDSKRKVKSQRKKGKNKSRRSKPVVEENEDFFCPPQPITLAEYFPRRFLDDS
        VV+F +E  ++ S  K  SIE++ EGW +V RR K+K + T+KESS +R+ +R+ K+Q+ K K K+R+ K V EE++DF  P + +T+A+ FP RFL D 
Subjt:  VVRFQKEATMKGSQEKYDSIEDEKEGWTLVVRREKQKQSYTRKESSLFRDSKRKVKSQRKKGKNKSRRSKPVVEENEDFFCPPQPITLAEYFPRRFLDDS

Query:  QGEALEIVTCHIVDVVEDDDVPANSSETVASPGDLSSFSIKDLLSLPQEAKSVLIDALIESDSYSLPT
        Q E  E++TCH ++  E++ +P+ S E      +LS F++ DLLSLPQE K++LI+AL+ S + S  T
Subjt:  QGEALEIVTCHIVDVVEDDDVPANSSETVASPGDLSSFSIKDLLSLPQEAKSVLIDALIESDSYSLPT

TYK28162.1 uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]3.8e-2533.2Show/hide
Query:  KGKNKSRRSKPVVEENEDFFCPP----QPITLAEYFPRRFLDDSQGEALEIVTCHIVDVVEDDDVPANSSETVASPG-DLSSFSIKDLLSLPQEAKSVLI
        K +  +  +K V+  +E    PP     P++  +     F++  QG  +++    +      D     + + +A  G D ++ +    L + ++ K    
Subjt:  KGKNKSRRSKPVVEENEDFFCPP----QPITLAEYFPRRFLDDSQGEALEIVTCHIVDVVEDDDVPANSSETVASPG-DLSSFSIKDLLSLPQEAKSVLI

Query:  DALIESDSYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSKEEESADQRASVFRRIRPPVSRALVFQRIIVNETEDGSAQPTNSFTRSSV
           +  + + +P +RKGLGYKSPEP+RITRKGK KV D NHITV+EVD  +E+E  +QR S F RI P V+RA VF+R+ + E E    Q T++  + S 
Subjt:  DALIESDSYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSKEEESADQRASVFRRIRPPVSRALVFQRIIVNETEDGSAQPTNSFTRSSV

Query:  FQRLGMFIRGEESTLSTPDVTVPSAFRRLNMLVGEEVSTLSTPDVTR
        FQRL +  + E+    T   T PSAF RL++   +   T   P + R
Subjt:  FQRLGMFIRGEESTLSTPDVTVPSAFRRLNMLVGEEVSTLSTPDVTR

TrEMBL top hitse value%identityAlignment
A0A5A7SRA6 Ty3-gypsy retrotransposon protein3.1e-2543.64Show/hide
Query:  VVRFQKEATMKGSQEKYDSIEDEKEGWTLVVRREKQKQSYTRKESSLFRDSKRKVKSQRKKGKNKSRRSKPVVEENEDFFCPPQPITLAEYFPRRFLDDS
        VV+F +E  ++ S+EK   IE++ EGW +V RR+K+K +   KES  +R+ +R  K+Q+ K K K+R+ K V EE++DF  P + +TLA++FP RFL D 
Subjt:  VVRFQKEATMKGSQEKYDSIEDEKEGWTLVVRREKQKQSYTRKESSLFRDSKRKVKSQRKKGKNKSRRSKPVVEENEDFFCPPQPITLAEYFPRRFLDDS

Query:  QGEALEIVTCHIVDVVEDDDVPANSSETVASPGDLSSFSIKDLLSLPQEAKSVLIDALIESDSYS
        Q E   +V CH ++V+E++ +P  S E       LS F++ DLLSLPQE K++LI+AL+ S + S
Subjt:  QGEALEIVTCHIVDVVEDDDVPANSSETVASPGDLSSFSIKDLLSLPQEAKSVLIDALIESDSYS

A0A5A7TY01 Ty3-gypsy retrotransposon protein1.5e-2744.05Show/hide
Query:  VVRFQKEATMKGSQEKYDSIEDEKEGWTLVVRREKQKQSYTRKESSLFRDSKRKVKSQRKKGKNKSRRSKPVVEENEDFFCPPQPITLAEYFPRRFLDDS
        VV+F +E  ++ S  K  SIE++ EGW +V RR K+K + T+KESS +R+ +R+ K+Q+ K K K+R+ K V EE++DF  P + +T+A+ FP RFL D 
Subjt:  VVRFQKEATMKGSQEKYDSIEDEKEGWTLVVRREKQKQSYTRKESSLFRDSKRKVKSQRKKGKNKSRRSKPVVEENEDFFCPPQPITLAEYFPRRFLDDS

Query:  QGEALEIVTCHIVDVVEDDDVPANSSETVASPGDLSSFSIKDLLSLPQEAKSVLIDALIESDSYSLPT
        Q E  E++TCH ++  E++ +P+ S E      +LS F++ DLLSLPQE K++LI+AL+ S + S  T
Subjt:  QGEALEIVTCHIVDVVEDDDVPANSSETVASPGDLSSFSIKDLLSLPQEAKSVLIDALIESDSYSLPT

A0A5D3BSG5 Uncharacterized protein8.2e-2643.53Show/hide
Query:  VVRFQKEATMKGSQEKYDSIEDEKEGWTLVVRREKQKQSYTRKESSLFRDSKRKVKSQRKKGKNKSRRSKPVVEENEDFFCPPQPITLAEYFPRRFLDDS
        VVRF +E   + SQEK   IE++ EGWT+V RR+K+K +  +KE   +R+ ++  K+Q+ K K K+R+ K + EE++DF    + +TLA++FP RFL D 
Subjt:  VVRFQKEATMKGSQEKYDSIEDEKEGWTLVVRREKQKQSYTRKESSLFRDSKRKVKSQRKKGKNKSRRSKPVVEENEDFFCPPQPITLAEYFPRRFLDDS

Query:  QGEALEIVTCHIVDVVEDDDVPANSSETVASPGDLSSFSIKDLLSLPQEAKSVLIDALIES--DSYSLPT
        Q E   +V CH ++ +E++++P  S E      DLS F++ DLLSLPQE K +LI+AL+ S   S S PT
Subjt:  QGEALEIVTCHIVDVVEDDDVPANSSETVASPGDLSSFSIKDLLSLPQEAKSVLIDALIES--DSYSLPT

A0A5D3BSG5 Uncharacterized protein5.3e-2547.52Show/hide
Query:  DSYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSKEEESADQRASVFRRIRPPVSRALVFQRIIVNETEDGSAQPTNSFTRSSVFQRLGM
        + + +P +RKGLGYKSPEP+RITRKGK KV D NHITV+EVD  +E E   QR S F RI P V+R  VF+R+ + E E    Q T++  R SVFQRL +
Subjt:  DSYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSKEEESADQRASVFRRIRPPVSRALVFQRIIVNETEDGSAQPTNSFTRSSVFQRLGM

Query:  FIRGEESTLSTPDVTVPSAFRRLNMLVGEEVSTLSTPDVTR
          + E+    T   T PSAF RL++   +   T   P + R
Subjt:  FIRGEESTLSTPDVTVPSAFRRLNMLVGEEVSTLSTPDVTR

A0A5D3BSG5 Uncharacterized protein1.8e-2543.53Show/hide
Query:  VVRFQKEATMKGSQEKYDSIEDEKEGWTLVVRREKQKQSYTRKESSLFRDSKRKVKSQRKKGKNKSRRSKPVVEENEDFFCPPQPITLAEYFPRRFLDDS
        VV+F +E   +  QEK  SIE + EGWT+V RR+K+K +  +KE   +R+ +R  K+Q+ K K K+++ K + EE++DF    + +TLA +FP RFL D 
Subjt:  VVRFQKEATMKGSQEKYDSIEDEKEGWTLVVRREKQKQSYTRKESSLFRDSKRKVKSQRKKGKNKSRRSKPVVEENEDFFCPPQPITLAEYFPRRFLDDS

Query:  QGEALEIVTCHIVDVVEDDDVPANSSETVASPGDLSSFSIKDLLSLPQEAKSVLIDALIES--DSYSLPT
        Q E  E+V CH +D +E++ +P  S E      DL  F++ DLLSLPQE K++LI+AL+ S   S S PT
Subjt:  QGEALEIVTCHIVDVVEDDDVPANSSETVASPGDLSSFSIKDLLSLPQEAKSVLIDALIES--DSYSLPT

A0A5D3DXC7 Reverse transcriptase domain-containing protein1.8e-2533.2Show/hide
Query:  KGKNKSRRSKPVVEENEDFFCPP----QPITLAEYFPRRFLDDSQGEALEIVTCHIVDVVEDDDVPANSSETVASPG-DLSSFSIKDLLSLPQEAKSVLI
        K +  +  +K V+  +E    PP     P++  +     F++  QG  +++    +      D     + + +A  G D ++ +    L + ++ K    
Subjt:  KGKNKSRRSKPVVEENEDFFCPP----QPITLAEYFPRRFLDDSQGEALEIVTCHIVDVVEDDDVPANSSETVASPG-DLSSFSIKDLLSLPQEAKSVLI

Query:  DALIESDSYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSKEEESADQRASVFRRIRPPVSRALVFQRIIVNETEDGSAQPTNSFTRSSV
           +  + + +P +RKGLGYKSPEP+RITRKGK KV D NHITV+EVD  +E+E  +QR S F RI P V+RA VF+R+ + E E    Q T++  + S 
Subjt:  DALIESDSYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSKEEESADQRASVFRRIRPPVSRALVFQRIIVNETEDGSAQPTNSFTRSSV

Query:  FQRLGMFIRGEESTLSTPDVTVPSAFRRLNMLVGEEVSTLSTPDVTR
        FQRL +  + E+    T   T PSAF RL++   +   T   P + R
Subjt:  FQRLGMFIRGEESTLSTPDVTVPSAFRRLNMLVGEEVSTLSTPDVTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTGAAATTAGGGAGGATCATACTCCTCTTGCTGTTGCAAACAGGATCTCAAAGCTGATTGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGACAACCCGCTGTTCGA
ATCTGTCGTTCCAACATCTAAGCAGCCAAAGGATGCACTAAATCCTGATGTGATGTCTGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGACAGAGATGGAAAGAA
AACTCAATCTCTTGATGAAGGCAGTTGAGGAAAGAGATCTGGAGATTGCCTATTTGAAGAACCAGCTGCAAAACCGAGAAACGACTGAGTCTAGCCAGACCCCTGTGGTT
CGTTTCCAAAAAGAAGCCACAATGAAAGGATCCCAAGAAAAATATGATTCCATTGAAGATGAGAAAGAAGGCTGGACCCTTGTCGTTCGTCGCGAAAAGCAAAAGCAAAG
TTACACACGAAAAGAGTCCAGCCTATTTCGAGACAGTAAAAGAAAGGTTAAGTCTCAAAGGAAGAAGGGAAAAAATAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAA
ATGAAGATTTCTTTTGCCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAAGCACTTGAAATCGTCACGTGTCACATT
GTGGACGTGGTGGAAGATGATGATGTACCTGCTAATTCCTCGGAAACGGTGGCAAGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTCAGGA
AGCTAAAAGTGTCCTTATTGATGCGTTGATCGAGTCTGATAGCTATAGTCTACCTACGACGAGAAAAGGACTTGGATATAAGTCGCCCGAGCCAGTTCGCATAACAAGAA
AAGGGAAGGCGAAAGTGGCAGACATAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAGAAGAGAGCGCCGACCAACGAGCTTCTGTTTTTAGGCGCATCAGG
CCACCAGTTTCTCGTGCTTTAGTCTTTCAGAGGATAATTGTGAATGAAACAGAAGACGGAAGTGCACAACCTACCAATAGCTTCACTCGATCTTCAGTTTTTCAAAGGTT
AGGTATGTTCATTAGGGGAGAAGAGAGTACACTTTCAACTCCAGATGTCACGGTTCCATCAGCTTTTCGAAGGTTAAATATGCTCGTTGGGGAAGAAGTGAGTACACTTT
CAACTCCGGATGTCACGCGACCTTCAGCTTTTCGAAGGTTAAATATGCCCGTTGGGGAAGAAGGGGGTACATTTTCAACTTCAGATGTGACTCGACCATCAGTTTTCAAA
GGTTAA
mRNA sequenceShow/hide mRNA sequence
ATTGAAATTAGGGAGGATCATACTCCTCTTGCTGTTGCAAACAGGATCTCAAAGCTGATTGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGACAACCCGCTGTTCGA
ATCTGTCGTTCCAACATCTAAGCAGCCAAAGGATGCACTAAATCCTGATGTGATGTCTGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGACAGAGATGGAAAGAA
AACTCAATCTCTTGATGAAGGCAGTTGAGGAAAGAGATCTGGAGATTGCCTATTTGAAGAACCAGCTGCAAAACCGAGAAACGACTGAGTCTAGCCAGACCCCTGTGGTT
CGTTTCCAAAAAGAAGCCACAATGAAAGGATCCCAAGAAAAATATGATTCCATTGAAGATGAGAAAGAAGGCTGGACCCTTGTCGTTCGTCGCGAAAAGCAAAAGCAAAG
TTACACACGAAAAGAGTCCAGCCTATTTCGAGACAGTAAAAGAAAGGTTAAGTCTCAAAGGAAGAAGGGAAAAAATAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAA
ATGAAGATTTCTTTTGCCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAAGCACTTGAAATCGTCACGTGTCACATT
GTGGACGTGGTGGAAGATGATGATGTACCTGCTAATTCCTCGGAAACGGTGGCAAGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTCAGGA
AGCTAAAAGTGTCCTTATTGATGCGTTGATCGAGTCTGATAGCTATAGTCTACCTACGACGAGAAAAGGACTTGGATATAAGTCGCCCGAGCCAGTTCGCATAACAAGAA
AAGGGAAGGCGAAAGTGGCAGACATAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAGAAGAGAGCGCCGACCAACGAGCTTCTGTTTTTAGGCGCATCAGG
CCACCAGTTTCTCGTGCTTTAGTCTTTCAGAGGATAATTGTGAATGAAACAGAAGACGGAAGTGCACAACCTACCAATAGCTTCACTCGATCTTCAGTTTTTCAAAGGTT
AGGTATGTTCATTAGGGGAGAAGAGAGTACACTTTCAACTCCAGATGTCACGGTTCCATCAGCTTTTCGAAGGTTAAATATGCTCGTTGGGGAAGAAGTGAGTACACTTT
CAACTCCGGATGTCACGCGACCTTCAGCTTTTCGAAGGTTAAATATGCCCGTTGGGGAAGAAGGGGGTACATTTTCAACTTCAGATGTGACTCGACCATCAGTTTTCAAA
GGTTAA
Protein sequenceShow/hide protein sequence
IEIREDHTPLAVANRISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDALNPDVMSVMMADVDQDERMTEMERKLNLLMKAVEERDLEIAYLKNQLQNRETTESSQTPVV
RFQKEATMKGSQEKYDSIEDEKEGWTLVVRREKQKQSYTRKESSLFRDSKRKVKSQRKKGKNKSRRSKPVVEENEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVTCHI
VDVVEDDDVPANSSETVASPGDLSSFSIKDLLSLPQEAKSVLIDALIESDSYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSKEEESADQRASVFRRIR
PPVSRALVFQRIIVNETEDGSAQPTNSFTRSSVFQRLGMFIRGEESTLSTPDVTVPSAFRRLNMLVGEEVSTLSTPDVTRPSAFRRLNMPVGEEGGTFSTSDVTRPSVFK
G