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Spg003257 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003257
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold4:30757039..30762383
RNA-Seq ExpressionSpg003257
SyntenySpg003257
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037251.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.2e-2050Show/hide
Query:  RVFENEELDVPRGNRSSLQTRELDKT-----------------VEIDLPVPDTLPTSAESSRSSSNTWVELYIESVYY-VNVLLLSEPSYVRATPRVCST
        R+   E L++PRGNR SLQT ELDKT                 VEI+LPV D LPTSAES  S+S+TW+ELY  SV+  + V L  +PS VRA   VC  
Subjt:  RVFENEELDVPRGNRSSLQTRELDKT-----------------VEIDLPVPDTLPTSAESSRSSSNTWVELYIESVYY-VNVLLLSEPSYVRATPRVCST

Query:  FQEGQRVSLEEDDVRWLHAIFRAKLAGGPGEGVT
          EG    +  DDV WLHA+F+AK  GGP  GVT
Subjt:  FQEGQRVSLEEDDVRWLHAIFRAKLAGGPGEGVT

KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]3.9e-2254.84Show/hide
Query:  PRGNRSSLQTRELDK-----------------TVEIDLPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEE
        PRGNR  LQT ELDK                  VEI+LP+PDTLPTSAESS S+S+TW+ELY ESV+    +L  +PS  RA   VC    EG    +  
Subjt:  PRGNRSSLQTRELDK-----------------TVEIDLPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEE

Query:  DDVRWLHAIFRAKLAGGPGEGVTP
        DDV WLHAIFRAK AGGPG GVTP
Subjt:  DDVRWLHAIFRAKLAGGPGEGVTP

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.7e-2356.03Show/hide
Query:  VFENEELDVPRGNRSSLQTRELDKTVEIDLPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEEDDVRWLHA
        VF +    +PRGNR +L T +LDKTVEI+LPVPDTLPTSAESS+S+S+TW+ELY ESV+    +L  +PS VR    VC    EG    +  DD+ WLHA
Subjt:  VFENEELDVPRGNRSSLQTRELDKTVEIDLPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEEDDVRWLHA

Query:  IFRAKLAGGPGEGVTP
        +F AK AG PG GV P
Subjt:  IFRAKLAGGPGEGVTP

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]1.2e-2353.38Show/hide
Query:  RVFENEELDVPRGNRSSLQTRELDKT-----------------VEIDLPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTF
        R+   E L++PRGNRSSLQT ELDKT                 VEI+LPVPDTLPTSAES  S+S+TW+ELY E V+    +L  +PS VRA   VC   
Subjt:  RVFENEELDVPRGNRSSLQTRELDKT-----------------VEIDLPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTF

Query:  QEGQRVSLEEDDVRWLHAIFRAKLAGGPGEGVT
         EG    +  DDV WLH +FRAK+AGGPG GVT
Subjt:  QEGQRVSLEEDDVRWLHAIFRAKLAGGPGEGVT

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]3.9e-2254.84Show/hide
Query:  PRGNRSSLQTRELDK-----------------TVEIDLPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEE
        PRGNR  LQT ELDK                  VEI+LP+PDTLPTSAESS S+S+TW+ELY ESV+    +L  +PS  RA   VC    EG    +  
Subjt:  PRGNRSSLQTRELDK-----------------TVEIDLPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEE

Query:  DDVRWLHAIFRAKLAGGPGEGVTP
        DDV WLHAIFRAK AGGPG GVTP
Subjt:  DDVRWLHAIFRAKLAGGPGEGVTP

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein1.9e-2254.84Show/hide
Query:  PRGNRSSLQTRELDK-----------------TVEIDLPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEE
        PRGNR  LQT ELDK                  VEI+LP+PDTLPTSAESS S+S+TW+ELY ESV+    +L  +PS  RA   VC    EG    +  
Subjt:  PRGNRSSLQTRELDK-----------------TVEIDLPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEE

Query:  DDVRWLHAIFRAKLAGGPGEGVTP
        DDV WLHAIFRAK AGGPG GVTP
Subjt:  DDVRWLHAIFRAKLAGGPGEGVTP

A0A5A7UAH6 CCHC-type domain-containing protein1.3e-2356.03Show/hide
Query:  VFENEELDVPRGNRSSLQTRELDKTVEIDLPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEEDDVRWLHA
        VF +    +PRGNR +L T +LDKTVEI+LPVPDTLPTSAESS+S+S+TW+ELY ESV+    +L  +PS VR    VC    EG    +  DD+ WLHA
Subjt:  VFENEELDVPRGNRSSLQTRELDKTVEIDLPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEEDDVRWLHA

Query:  IFRAKLAGGPGEGVTP
        +F AK AG PG GV P
Subjt:  IFRAKLAGGPGEGVTP

A0A5A7VIY9 Uncharacterized protein5.9e-2453.38Show/hide
Query:  RVFENEELDVPRGNRSSLQTRELDKT-----------------VEIDLPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTF
        R+   E L++PRGNRSSLQT ELDKT                 VEI+LPVPDTLPTSAES  S+S+TW+ELY E V+    +L  +PS VRA   VC   
Subjt:  RVFENEELDVPRGNRSSLQTRELDKT-----------------VEIDLPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTF

Query:  QEGQRVSLEEDDVRWLHAIFRAKLAGGPGEGVT
         EG    +  DDV WLH +FRAK+AGGPG GVT
Subjt:  QEGQRVSLEEDDVRWLHAIFRAKLAGGPGEGVT

A0A5D3C867 DNA/RNA polymerases superfamily protein4.0e-2050Show/hide
Query:  RVFENEELDVPRGNRSSLQTRELDKT-----------------VEIDLPVPDTLPTSAESSRSSSNTWVELYIESVYY-VNVLLLSEPSYVRATPRVCST
        R+   E L++PRGNR SLQT ELDKT                 VEI+LPV D LPTSAES  S+S+TW+ELY  SV+  + V L  +PS VRA   VC  
Subjt:  RVFENEELDVPRGNRSSLQTRELDKT-----------------VEIDLPVPDTLPTSAESSRSSSNTWVELYIESVYY-VNVLLLSEPSYVRATPRVCST

Query:  FQEGQRVSLEEDDVRWLHAIFRAKLAGGPGEGVT
          EG    +  DDV WLHA+F+AK  GGP  GVT
Subjt:  FQEGQRVSLEEDDVRWLHAIFRAKLAGGPGEGVT

A0A5D3DR18 Gag/pol protein1.9e-2254.84Show/hide
Query:  PRGNRSSLQTRELDK-----------------TVEIDLPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEE
        PRGNR  LQT ELDK                  VEI+LP+PDTLPTSAESS S+S+TW+ELY ESV+    +L  +PS  RA   VC    EG    +  
Subjt:  PRGNRSSLQTRELDK-----------------TVEIDLPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEE

Query:  DDVRWLHAIFRAKLAGGPGEGVTP
        DDV WLHAIFRAK AGGPG GVTP
Subjt:  DDVRWLHAIFRAKLAGGPGEGVTP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCCAAGAAGGTCTCGACCAACGTAGGTGGAGACTCAACATTGACGGGAAAAGAGGAGGAAAACACCACCGTCCTCTCACCACAATCAACAACCGTAAGTTGTAG
AGTGTTCGAAAATGAAGAGCTTGATGTGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGAGAACTAGATAAGACAGTAGAGATCGACCTCCCGGTGCCTGATACACTGC
CAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTATTATCCGAGCCAAGTTATGTCAGG
GCGACACCTCGTGTTTGTTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCC
GGGAGAGGGTGTGACACCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCATCCAAGAAGGTCTCGACCAACGTAGGTGGAGACTCAACATTGACGGGAAAAGAGGAGGAAAACACCACCGTCCTCTCACCACAATCAACAACCGTAAGTTGTAG
AGTGTTCGAAAATGAAGAGCTTGATGTGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGAGAACTAGATAAGACAGTAGAGATCGACCTCCCGGTGCCTGATACACTGC
CAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTATTATCCGAGCCAAGTTATGTCAGG
GCGACACCTCGTGTTTGTTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCC
GGGAGAGGGTGTGACACCCTAG
Protein sequenceShow/hide protein sequence
MASKKVSTNVGGDSTLTGKEEENTTVLSPQSTTVSCRVFENEELDVPRGNRSSLQTRELDKTVEIDLPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVR
ATPRVCSTFQEGQRVSLEEDDVRWLHAIFRAKLAGGPGEGVTP