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Spg003263 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003263
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionComponent of oligomeric Golgi complex 2
Genome locationscaffold4:33304449..33305981
RNA-Seq ExpressionSpg003263
SyntenySpg003263
Gene Ontology termsGO:0007030 - Golgi organization (biological process)
GO:0015031 - protein transport (biological process)
GO:0060178 - regulation of exocyst localization (biological process)
GO:0005794 - Golgi apparatus (cellular component)
GO:0016020 - membrane (cellular component)
GO:0031410 - cytoplasmic vesicle (cellular component)
GO:0042803 - protein homodimerization activity (molecular function)
InterPro domainsIPR009316 - COG complex component, COG2
IPR024602 - Conserved oligomeric Golgi complex, subunit 2, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7019738.1 Conserved oligomeric Golgi complex subunit 2 [Cucurbita argyrosperma subsp. argyrosperma]5.4e-1567.95Show/hide
Query:  NYNYRFYIPKL-AFI----LSLLIHEQIFPLNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFR
        N++   YI +L  F+    L   +H  +  LNRELIDLINRDYTDFVNLSTKLVDVE  VVRMRAPLVELREKIEQFR
Subjt:  NYNYRFYIPKL-AFI----LSLLIHEQIFPLNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFR
XP_008463109.1 PREDICTED: conserved oligomeric Golgi complex subunit 2 [Cucumis melo]5.4e-1567.95Show/hide
Query:  NYNYRFYIPKL-AFI----LSLLIHEQIFPLNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFR
        N++   YI +L  F+    L   +H  +  LNRELIDLINRDYTDFVNLSTKLVDVE  VVRMRAPLVELREKIEQFR
Subjt:  NYNYRFYIPKL-AFI----LSLLIHEQIFPLNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFR
XP_022137394.1 conserved oligomeric Golgi complex subunit 2 [Momordica charantia]8.3e-1668.35Show/hide
Query:  NYNYRFYIPKL-AFI----LSLLIHEQIFPLNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFRG
        N++   YI +L  F+    L   +H  +  LNRELIDLINRDYTDFVNLSTKLVDVE  VVRMRAPLVELREKIEQFRG
Subjt:  NYNYRFYIPKL-AFI----LSLLIHEQIFPLNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFRG
XP_031743585.1 conserved oligomeric Golgi complex subunit 2 [Cucumis sativus]8.3e-1668.35Show/hide
Query:  NYNYRFYIPKL-AFI----LSLLIHEQIFPLNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFRG
        N++   YI +L  F+    L   +H  +  LNRELIDLINRDYTDFVNLSTKLVDVE  VVRMRAPLVELREKIEQFRG
Subjt:  NYNYRFYIPKL-AFI----LSLLIHEQIFPLNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFRG
XP_038884882.1 LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 2 [Benincasa hispida]3.7e-1685.71Show/hide
Query:  IHEQIFPLNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFRG
        +H  +  LNRELIDLINRDYTDFVNLSTKLVDVE  VVRMRAPLVELREKIEQFRG
Subjt:  IHEQIFPLNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFRG
TrEMBL top hitse value%identityAlignment
A0A0A0KBT8 Component of oligomeric Golgi complex 24.0e-1668.35Show/hide
Query:  NYNYRFYIPKL-AFI----LSLLIHEQIFPLNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFRG
        N++   YI +L  F+    L   +H  +  LNRELIDLINRDYTDFVNLSTKLVDVE  VVRMRAPLVELREKIEQFRG
Subjt:  NYNYRFYIPKL-AFI----LSLLIHEQIFPLNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFRG
A0A5A7U0M8 Component of oligomeric Golgi complex 22.6e-1567.95Show/hide
Query:  NYNYRFYIPKL-AFI----LSLLIHEQIFPLNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFR
        N++   YI +L  F+    L   +H  +  LNRELIDLINRDYTDFVNLSTKLVDVE  VVRMRAPLVELREKIEQFR
Subjt:  NYNYRFYIPKL-AFI----LSLLIHEQIFPLNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFR
A0A5D3BRV0 Component of oligomeric Golgi complex 22.6e-1567.95Show/hide
Query:  NYNYRFYIPKL-AFI----LSLLIHEQIFPLNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFR
        N++   YI +L  F+    L   +H  +  LNRELIDLINRDYTDFVNLSTKLVDVE  VVRMRAPLVELREKIEQFR
Subjt:  NYNYRFYIPKL-AFI----LSLLIHEQIFPLNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFR
A0A6J1C744 Component of oligomeric Golgi complex 24.0e-1668.35Show/hide
Query:  NYNYRFYIPKL-AFI----LSLLIHEQIFPLNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFRG
        N++   YI +L  F+    L   +H  +  LNRELIDLINRDYTDFVNLSTKLVDVE  VVRMRAPLVELREKIEQFRG
Subjt:  NYNYRFYIPKL-AFI----LSLLIHEQIFPLNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFRG
A0A6J1KHC6 Component of oligomeric Golgi complex 22.6e-1567.95Show/hide
Query:  NYNYRFYIPKL-AFI----LSLLIHEQIFPLNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFR
        N++   YI +L  F+    L   +H  +  LNRELIDLINRDYTDFVNLSTKLVDVE  VVRMRAPLVELREKIEQFR
Subjt:  NYNYRFYIPKL-AFI----LSLLIHEQIFPLNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFR
SwissProt top hitse value%identityAlignment
F4JRR1 Conserved oligomeric Golgi complex subunit 21.2e-1458.23Show/hide
Query:  NYNYRFYIPKL-AFI----LSLLIHEQIFPLNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFRG
        N++   YI +L  F+    L   +   +  LNREL+DLINRDY DFVNLSTKLVD++  VVRMRAPL+ELREKI  FRG
Subjt:  NYNYRFYIPKL-AFI----LSLLIHEQIFPLNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFRG
Q14746 Conserved oligomeric Golgi complex subunit 24.4e-0443.75Show/hide
Query:  LNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFR
        L   +++LIN+DY DFVNLST LV ++  + ++  PL +LRE++   R
Subjt:  LNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFR
Q921L5 Conserved oligomeric Golgi complex subunit 25.8e-0443.75Show/hide
Query:  LNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFR
        L   +++LIN+DY DFVNLST LV ++  + ++  PL +LRE++   R
Subjt:  LNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFR
Q9VF78 Conserved oligomeric Golgi complex subunit 25.8e-0444.9Show/hide
Query:  LNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFRG
        L   +IDLIN DY DFVNLS  LV ++  +  ++ PL + R  IE   G
Subjt:  LNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFRG
Arabidopsis top hitse value%identityAlignment
AT4G24840.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterPro:IPR009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).8.8e-1658.23Show/hide
Query:  NYNYRFYIPKL-AFI----LSLLIHEQIFPLNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFRG
        N++   YI +L  F+    L   +   +  LNREL+DLINRDY DFVNLSTKLVD++  VVRMRAPL+ELREKI  FRG
Subjt:  NYNYRFYIPKL-AFI----LSLLIHEQIFPLNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFRG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCTCCAATCTTTTGCTTCTGGTTTTTGCTTCTGGGTTCTTTAGCTACAGGGATCCTAGTAAAAAATCTAATTTTGTAAATTATAATTATAGATTTTATATTCC
TAAATTAGCTTTTATTTTGTCCCTTCTAATCCACGAACAGATCTTTCCTCTGAATCGTGAGCTTATTGATTTGATTAATCGTGACTATACCGATTTTGTCAACTTGAGTA
CAAAGCTTGTGGATGTGGAAGTGACAGTCGTGCGAATGCGAGCTCCTTTGGTTGAACTCAGGGAGAAAATTGAGCAATTCAGGGGTTGGAGTTTTCTCTCTCAGCTTTGC
AGAATGGATTGCGGCAGAGATTATCAGAGGCAGCATCGGCCAAAGAGGTCTTGGAATTTATTGAGCAATTCAAGG
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCCTCCAATCTTTTGCTTCTGGTTTTTGCTTCTGGGTTCTTTAGCTACAGGGATCCTAGTAAAAAATCTAATTTTGTAAATTATAATTATAGATTTTATATTCC
TAAATTAGCTTTTATTTTGTCCCTTCTAATCCACGAACAGATCTTTCCTCTGAATCGTGAGCTTATTGATTTGATTAATCGTGACTATACCGATTTTGTCAACTTGAGTA
CAAAGCTTGTGGATGTGGAAGTGACAGTCGTGCGAATGCGAGCTCCTTTGGTTGAACTCAGGGAGAAAATTGAGCAATTCAGGGGTTGGAGTTTTCTCTCTCAGCTTTGC
AGAATGGATTGCGGCAGAGATTATCAGAGGCAGCATCGGCCAAAGAGGTCTTGGAATTTATTGAGCAATTCAAGG
Protein sequenceShow/hide protein sequence
MAASNLLLLVFASGFFSYRDPSKKSNFVNYNYRFYIPKLAFILSLLIHEQIFPLNRELIDLINRDYTDFVNLSTKLVDVEVTVVRMRAPLVELREKIEQFRGWSFLSQLC
RMDCGRDYQRQHRPKRSWNLLSNSR