; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg003303 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003303
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionVQ domain-containing protein
Genome locationscaffold4:46543531..46543860
RNA-Seq ExpressionSpg003303
SyntenySpg003303
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063579.1 VQ motif-containing protein [Cucumis melo var. makuwa]2.8e-3072.81Show/hide
Query:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPD-DA-FDQSPQEFNQVSYLPPSSTA---ASFDPNGCYGSVSGDVY--DPIGVG-EGRNWRGEMEG
        KPIKVKYIS+PMMVKANNESEFRAIVQKLTGQHSPD DA FDQS Q+FN   Y PP S++    SFDP  CYGS SGDV   D I  G EGR WRGEMEG
Subjt:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPD-DA-FDQSPQEFNQVSYLPPSSTA---ASFDPNGCYGSVSGDVY--DPIGVG-EGRNWRGEMEG

Query:  SFSGFQA-SYVDVW
        SFSGFQA S V++W
Subjt:  SFSGFQA-SYVDVW

KAE8651551.1 hypothetical protein Csa_019210 [Cucumis sativus]5.8e-2873.21Show/hide
Query:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPP--SSTAASFDPNGCYG-SVSGDV-YDPIGVG-EGRNWRGEME-GSF
        KPIKVKYIS+PMMVKANNESEFRAIVQKLTGQHSPD   DQS Q+FN V Y PP  SS   SFDP  CYG S SGDV +D I  G EGR WRGEME GSF
Subjt:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPP--SSTAASFDPNGCYG-SVSGDV-YDPIGVG-EGRNWRGEME-GSF

Query:  SGFQA-SYVDVW
        SGFQA S V++W
Subjt:  SGFQA-SYVDVW

KAG6586326.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.6e-3069.72Show/hide
Query:  MELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFSGF
        M  KPIKVKYIS+PMMVKA+NE EFRAIVQKLTGQHS DDAFD+SPQEFN  ++ PPSST  SFD   CY  VS D YDPI V       GEM+ S  GF
Subjt:  MELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFSGF

Query:  QASYVDVWR
        QASYVDVWR
Subjt:  QASYVDVWR

XP_022938305.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]5.1e-3271.56Show/hide
Query:  MELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFSGF
        M  KPIKVKYIS+PMMVKANNE EFRAIVQKLTGQHS DDAFD+SPQEFN  ++ PPSST  SFD   CY  VS D YDPIGV       GEM+ S  GF
Subjt:  MELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFSGF

Query:  QASYVDVWR
        QASYVDVWR
Subjt:  QASYVDVWR

XP_038877668.1 sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]7.3e-3172.9Show/hide
Query:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAA-SFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFSGFQA
        KPIKVKYIS+PMMVKANNESEFRAIVQKLTGQHSP DAFDQS ++FNQV Y PPSS AA SFDP  CY S SGDV          +W+GEMEGSFSGFQA
Subjt:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAA-SFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFSGFQA

Query:  -SYVDVW
         S V+ W
Subjt:  -SYVDVW

TrEMBL top hitse value%identityAlignment
A0A0A0LFF9 VQ domain-containing protein2.8e-2873.21Show/hide
Query:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPP--SSTAASFDPNGCYG-SVSGDV-YDPIGVG-EGRNWRGEME-GSF
        KPIKVKYIS+PMMVKANNESEFRAIVQKLTGQHSPD   DQS Q+FN V Y PP  SS   SFDP  CYG S SGDV +D I  G EGR WRGEME GSF
Subjt:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPP--SSTAASFDPNGCYG-SVSGDV-YDPIGVG-EGRNWRGEME-GSF

Query:  SGFQA-SYVDVW
        SGFQA S V++W
Subjt:  SGFQA-SYVDVW

A0A5A7VDH6 VQ motif-containing protein1.3e-3072.81Show/hide
Query:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPD-DA-FDQSPQEFNQVSYLPPSSTA---ASFDPNGCYGSVSGDVY--DPIGVG-EGRNWRGEMEG
        KPIKVKYIS+PMMVKANNESEFRAIVQKLTGQHSPD DA FDQS Q+FN   Y PP S++    SFDP  CYGS SGDV   D I  G EGR WRGEMEG
Subjt:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPD-DA-FDQSPQEFNQVSYLPPSSTA---ASFDPNGCYGSVSGDVY--DPIGVG-EGRNWRGEMEG

Query:  SFSGFQA-SYVDVW
        SFSGFQA S V++W
Subjt:  SFSGFQA-SYVDVW

A0A6J1CME4 sigma factor binding protein 1, chloroplastic-like1.4e-2261.47Show/hide
Query:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQ----SPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFSG
        KPIKVKYISNPMMVKAN+ESEFR IVQ+LTGQ+SPDDAF+       +E N   Y PP STA S DP G YG VSG V +   +GEG   + EM+G FSG
Subjt:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQ----SPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFSG

Query:  FQASYVDVW
        FQAS V+ +
Subjt:  FQASYVDVW

A0A6J1FJE0 sigma factor binding protein 1, chloroplastic-like2.5e-3271.56Show/hide
Query:  MELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFSGF
        M  KPIKVKYIS+PMMVKANNE EFRAIVQKLTGQHS DDAFD+SPQEFN  ++ PPSST  SFD   CY  VS D YDPIGV       GEM+ S  GF
Subjt:  MELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFSGF

Query:  QASYVDVWR
        QASYVDVWR
Subjt:  QASYVDVWR

A0A7J9MSD9 VQ domain-containing protein4.2e-0841.58Show/hide
Query:  PIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFSGFQASY
        P+KVKYIS+PMMVKA+N  EFRAIVQ+LTGQHS          +  +   +  ++T A  D      +   D+       EG  WRG  E  F GFQ+ +
Subjt:  PIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFSGFQASY

Query:  V
        V
Subjt:  V

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic6.5e-0639Show/hide
Query:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFSGFQAS
        KPIKV+YISNPM V+    S+FR +VQ+LTGQ + D     SP  F  V    P  +  + +P    G V G+ Y P+   E      +M    SGF +S
Subjt:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFSGFQAS

Q9LDH1 Sigma factor binding protein 1, chloroplastic3.6e-0435.64Show/hide
Query:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHS----PDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFSG
        KPIKV+YISNPM V+    S+FR +VQ+LTGQ +    P+  +  S  + N     P  + A        +G    D Y+P+   E      +M   FSG
Subjt:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHS----PDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFSG

Query:  F
        F
Subjt:  F

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein4.6e-0739Show/hide
Query:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFSGFQAS
        KPIKV+YISNPM V+    S+FR +VQ+LTGQ + D     SP  F  V    P  +  + +P    G V G+ Y P+   E      +M    SGF +S
Subjt:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFSGFQAS

AT3G56710.1 sigma factor binding protein 12.5e-0535.64Show/hide
Query:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHS----PDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFSG
        KPIKV+YISNPM V+    S+FR +VQ+LTGQ +    P+  +  S  + N     P  + A        +G    D Y+P+   E      +M   FSG
Subjt:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHS----PDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFSG

Query:  F
        F
Subjt:  F


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCTCAAGCCCATCAAAGTCAAGTACATTTCCAATCCCATGATGGTCAAGGCCAACAACGAGTCTGAATTTCGAGCCATAGTTCAGAAGCTCACCGGCCAGCACTC
GCCCGATGATGCTTTTGATCAATCACCTCAAGAGTTTAACCAAGTTTCTTATCTGCCCCCGTCGTCTACGGCGGCTTCTTTTGACCCTAATGGTTGTTACGGTTCGGTCT
CCGGTGATGTCTACGATCCGATCGGGGTCGGCGAAGGCCGCAACTGGCGAGGTGAAATGGAAGGCTCTTTTTCTGGGTTTCAAGCTTCTTATGTTGATGTGTGGCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCTCAAGCCCATCAAAGTCAAGTACATTTCCAATCCCATGATGGTCAAGGCCAACAACGAGTCTGAATTTCGAGCCATAGTTCAGAAGCTCACCGGCCAGCACTC
GCCCGATGATGCTTTTGATCAATCACCTCAAGAGTTTAACCAAGTTTCTTATCTGCCCCCGTCGTCTACGGCGGCTTCTTTTGACCCTAATGGTTGTTACGGTTCGGTCT
CCGGTGATGTCTACGATCCGATCGGGGTCGGCGAAGGCCGCAACTGGCGAGGTGAAATGGAAGGCTCTTTTTCTGGGTTTCAAGCTTCTTATGTTGATGTGTGGCGATGA
Protein sequenceShow/hide protein sequence
MELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFSGFQASYVDVWR