; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg003330 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003330
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDEAD-box ATP-dependent RNA helicase
Genome locationscaffold4:49278333..49279556
RNA-Seq ExpressionSpg003330
SyntenySpg003330
Gene Ontology termsGO:0042254 - ribosome biogenesis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR011545 - DEAD/DEAH box helicase domain
IPR014014 - RNA helicase, DEAD-box type, Q motif
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7030524.1 DEAD-box ATP-dependent RNA helicase 17 [Cucurbita argyrosperma subsp. argyrosperma]1.3e-4391.09Show/hide
Query:  MNEEMKETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFG
        MNE MK TTKKMVKE EIFASCTFA+LGLH+TLCD+LRDKMGFEVPT+VQAQAIPAILSGRHVLVNAATGTGKT AYLVPIIHHLQKSDRRIQRADGTF 
Subjt:  MNEEMKETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFG

Query:  A
        A
Subjt:  A

XP_022946513.1 DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita moschata]7.5e-4492.93Show/hide
Query:  MNEEMKETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTF
        MNE MK TTKKMVKE EIFASCTFASLGLH+TLCD+LRDKMGFEVPT+VQAQAIPAILSGRHVLVNAATGTGKT AYLVPIIHHLQKSDRRIQRADGTF
Subjt:  MNEEMKETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTF

XP_022946514.1 DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucurbita moschata]7.5e-4492.93Show/hide
Query:  MNEEMKETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTF
        MNE MK TTKKMVKE EIFASCTFASLGLH+TLCD+LRDKMGFEVPT+VQAQAIPAILSGRHVLVNAATGTGKT AYLVPIIHHLQKSDRRIQRADGTF
Subjt:  MNEEMKETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTF

XP_022975310.1 DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita maxima]7.5e-4492.93Show/hide
Query:  MNEEMKETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTF
        MNE MK TTKKMVKE EIFASCTFASLGLH+TLCD+LRDKMGFEVPT+VQAQAIPAILSGRHVLVNAATGTGKT AYLVPIIHHLQKSDRRIQRADGTF
Subjt:  MNEEMKETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTF

XP_022975312.1 DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucurbita maxima]7.5e-4492.93Show/hide
Query:  MNEEMKETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTF
        MNE MK TTKKMVKE EIFASCTFASLGLH+TLCD+LRDKMGFEVPT+VQAQAIPAILSGRHVLVNAATGTGKT AYLVPIIHHLQKSDRRIQRADGTF
Subjt:  MNEEMKETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTF

TrEMBL top hitse value%identityAlignment
A0A0A0LKK2 Q_MOTIF domain-containing protein1.1e-4386.92Show/hide
Query:  MNSSIKFMNEEMKETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQ
        M+SSIK+ NE +K TTKKMVKE E+FASCTFASLGL STLCDQLRDKMGFEVPT+VQAQAIPAILS RHVLVNAATGTGKT AYLVPIIHHLQKS RR Q
Subjt:  MNSSIKFMNEEMKETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQ

Query:  RADGTFG
        RADGTFG
Subjt:  RADGTFG

A0A6J1G419 DEAD-box ATP-dependent RNA helicase 17 isoform X23.6e-4492.93Show/hide
Query:  MNEEMKETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTF
        MNE MK TTKKMVKE EIFASCTFASLGLH+TLCD+LRDKMGFEVPT+VQAQAIPAILSGRHVLVNAATGTGKT AYLVPIIHHLQKSDRRIQRADGTF
Subjt:  MNEEMKETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTF

A0A6J1G427 DEAD-box ATP-dependent RNA helicase 17 isoform X13.6e-4492.93Show/hide
Query:  MNEEMKETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTF
        MNE MK TTKKMVKE EIFASCTFASLGLH+TLCD+LRDKMGFEVPT+VQAQAIPAILSGRHVLVNAATGTGKT AYLVPIIHHLQKSDRRIQRADGTF
Subjt:  MNEEMKETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTF

A0A6J1ICQ6 DEAD-box ATP-dependent RNA helicase 17 isoform X23.6e-4492.93Show/hide
Query:  MNEEMKETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTF
        MNE MK TTKKMVKE EIFASCTFASLGLH+TLCD+LRDKMGFEVPT+VQAQAIPAILSGRHVLVNAATGTGKT AYLVPIIHHLQKSDRRIQRADGTF
Subjt:  MNEEMKETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTF

A0A6J1IGD1 DEAD-box ATP-dependent RNA helicase 17 isoform X13.6e-4492.93Show/hide
Query:  MNEEMKETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTF
        MNE MK TTKKMVKE EIFASCTFASLGLH+TLCD+LRDKMGFEVPT+VQAQAIPAILSGRHVLVNAATGTGKT AYLVPIIHHLQKSDRRIQRADGTF
Subjt:  MNEEMKETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTF

SwissProt top hitse value%identityAlignment
Q0DLB9 DEAD-box ATP-dependent RNA helicase 173.3e-2658.51Show/hide
Query:  KETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTF
        K    K   +  +FASC+F  LGLH TLC  L+DKMGF+ PT +QAQAIP  +SG+H+LV AATGTGKT AYL PI+H LQ  + R++R DGTF
Subjt:  KETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTF

Q6NZQ2 Probable ATP-dependent RNA helicase DDX316.0e-1237.74Show/hide
Query:  SSIKFMNEEMKETTKKMVKES--EIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQ
        SS+   N E+ E    +VK++  ++F+   F  L LH  L   +   +     T VQ Q+IP +L GR  LV + TG+GKT AY VP++  LQ    +IQ
Subjt:  SSIKFMNEEMKETTKKMVKES--EIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQ

Query:  RADGTF
        R+DG +
Subjt:  RADGTF

Q7XJN0 DEAD-box ATP-dependent RNA helicase 171.5e-2658.25Show/hide
Query:  SIKFMNEEMKETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRAD
        S +   +E K+ +K    +S +FASC+F+SLGL + L DQL+++MGFE PT+VQAQAIP ILSGR VLVNA TGTGKT AYL P+IHHLQ    ++ R+ 
Subjt:  SIKFMNEEMKETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRAD

Query:  GTF
        GTF
Subjt:  GTF

Q86B47 Probable ATP-dependent RNA helicase CG86113.5e-1240.21Show/hide
Query:  EEMKETTKKMVK--ESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADG
        E +K+  ++ VK  +  IF     ++LGLH      L D +     T VQ + IP +L G+ VLV + TG+GKT AY +P++  LQK   RIQR DG
Subjt:  EEMKETTKKMVK--ESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADG

Q9H8H2 Probable ATP-dependent RNA helicase DDX311.4e-1337.74Show/hide
Query:  SSIKFMNEEMKETTKKMVK--ESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQ
        SS+   N ++ E  + +VK  + ++F S  F  LGLH  L   +   +     T VQ Q+IP +L GR  LV + TG+GKT AY +P++  LQ  + +IQ
Subjt:  SSIKFMNEEMKETTKKMVK--ESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQ

Query:  RADGTF
        R+DG +
Subjt:  RADGTF

Arabidopsis top hitse value%identityAlignment
AT1G12770.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein6.2e-1241.86Show/hide
Query:  NEEMKETTKKMVKE--SEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHL
        N++MK   +K   E  S +F++ +F  LGL  +L D L ++ GF VPT VQ+ A+PAI+ G   ++ + TG+GKT AYL+PI+  +
Subjt:  NEEMKETTKKMVKE--SEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHL

AT2G40700.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein1.0e-2758.25Show/hide
Query:  SIKFMNEEMKETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRAD
        S +   +E K+ +K    +S +FASC+F+SLGL + L DQL+++MGFE PT+VQAQAIP ILSGR VLVNA TGTGKT AYL P+IHHLQ    ++ R+ 
Subjt:  SIKFMNEEMKETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRAD

Query:  GTF
        GTF
Subjt:  GTF

AT2G47330.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein8.9e-1141.03Show/hide
Query:  TFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFG
        TF   G  S +   ++ K  +E PT +Q QA+P +LSGR V+  A TG+GKTAA+++P+I H+      +QR +G  G
Subjt:  TFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFG

AT3G02065.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein1.3e-0946.67Show/hide
Query:  TFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPII------HHLQKSDRR
        TF S GL   L   L +  G++ PT +Q QAIPA L+G+ +L +A TG+GKTA++LVPII      H    SD+R
Subjt:  TFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPII------HHLQKSDRR

AT4G34910.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein8.9e-1141.38Show/hide
Query:  EEMKETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSD
        EE +   ++  ++ E  A  +F  LGL S L   L  K G E PT++Q  AIP IL G+ V+  A TG+GKT AYL+P++  L  +D
Subjt:  EEMKETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAGCAGCATCAAATTTATGAACGAAGAGATGAAGGAGACGACGAAGAAAATGGTTAAAGAGAGTGAGATTTTTGCTTCTTGTACTTTCGCCAGCCTCGGTTTGCA
CTCTACTTTATGTGACCAACTCCGAGATAAAATGGGATTTGAAGTTCCAACCATTGTGCAGGCTCAAGCAATACCGGCTATTTTATCTGGGCGTCACGTTCTTGTTAATG
CGGCCACGGGCACTGGCAAAACTGCTGCGTATTTGGTTCCAATCATCCATCACTTGCAGAAGTCTGATCGTAGGATTCAACGAGCTGATGGAACTTTCGGTGCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATAGCAGCATCAAATTTATGAACGAAGAGATGAAGGAGACGACGAAGAAAATGGTTAAAGAGAGTGAGATTTTTGCTTCTTGTACTTTCGCCAGCCTCGGTTTGCA
CTCTACTTTATGTGACCAACTCCGAGATAAAATGGGATTTGAAGTTCCAACCATTGTGCAGGCTCAAGCAATACCGGCTATTTTATCTGGGCGTCACGTTCTTGTTAATG
CGGCCACGGGCACTGGCAAAACTGCTGCGTATTTGGTTCCAATCATCCATCACTTGCAGAAGTCTGATCGTAGGATTCAACGAGCTGATGGAACTTTCGGTGCGTAA
Protein sequenceShow/hide protein sequence
MNSSIKFMNEEMKETTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFGA