; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg003333 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003333
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonucloprotein
Genome locationscaffold4:47732336..47735098
RNA-Seq ExpressionSpg003333
SyntenySpg003333
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0000470 - maturation of LSU-rRNA (biological process)
GO:0030490 - maturation of SSU-rRNA (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0031428 - box C/D snoRNP complex (cellular component)
GO:0032040 - small-subunit processome (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR002415 - H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote
IPR004037 - Ribosomal protein L7Ae conserved site
IPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45
IPR018492 - Ribosomal protein L7Ae/L8/Nhp2 family
IPR029064 - 50S ribosomal protein L30e-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAT80699.1 hypothetical protein VIGAN_03029700 [Vigna angularis var. angularis]1.4e-6197.67Show/hide
Query:  IETGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPV
        ++TGE VNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPV
Subjt:  IETGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPV

Query:  IACSVTTNEGSQLKSQIQQLKDAIEKLLI
        IACSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  IACSVTTNEGSQLKSQIQQLKDAIEKLLI

KAG4930169.1 hypothetical protein JHK86_047130 [Glycine max]1.8e-6197.67Show/hide
Query:  IETGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPV
        ++TGEAVNPKAYPLADAQL+ITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPV
Subjt:  IETGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPV

Query:  IACSVTTNEGSQLKSQIQQLKDAIEKLLI
        IACSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  IACSVTTNEGSQLKSQIQQLKDAIEKLLI

XP_020204806.1 NHP2-like protein 1 isoform X1 [Cajanus cajan]6.3e-6298.45Show/hide
Query:  IETGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPV
        ++TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPV
Subjt:  IETGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPV

Query:  IACSVTTNEGSQLKSQIQQLKDAIEKLLI
        IACSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  IACSVTTNEGSQLKSQIQQLKDAIEKLLI

XP_021819546.1 NHP2-like protein 1 [Prunus avium]1.1e-6190.14Show/hide
Query:  DYTDAPGTDKDNRIETGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSK
        D +  P   KD  +ETGEAVN KAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMA DTEP+EILLHLPLLAEDKNVPYVFVPSK
Subjt:  DYTDAPGTDKDNRIETGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSK

Query:  QALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI
        QALGRACGVTRPVIACSVT+NEGSQLKSQIQQLKDAIEKLLI
Subjt:  QALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI

XP_027332261.1 NHP2-like protein 1 isoform X1 [Abrus precatorius]1.4e-6196.9Show/hide
Query:  IETGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPV
        ++TGEAVNPKAYPLADAQLTITI+DLVQQAANYKQLKKGANEATKTLNRGISEF+VMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPV
Subjt:  IETGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPV

Query:  IACSVTTNEGSQLKSQIQQLKDAIEKLLI
        IACSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  IACSVTTNEGSQLKSQIQQLKDAIEKLLI

TrEMBL top hitse value%identityAlignment
A0A0S3RJ84 Ribonucloprotein6.8e-6297.67Show/hide
Query:  IETGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPV
        ++TGE VNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPV
Subjt:  IETGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPV

Query:  IACSVTTNEGSQLKSQIQQLKDAIEKLLI
        IACSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  IACSVTTNEGSQLKSQIQQLKDAIEKLLI

A0A444WXD4 Ribonucloprotein8.8e-62100Show/hide
Query:  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
        TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
Subjt:  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA

Query:  CSVTTNEGSQLKSQIQQLKDAIEKLLI
        CSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  CSVTTNEGSQLKSQIQQLKDAIEKLLI

A0A5A7V206 Ribonucloprotein8.8e-62100Show/hide
Query:  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
        TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
Subjt:  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA

Query:  CSVTTNEGSQLKSQIQQLKDAIEKLLI
        CSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  CSVTTNEGSQLKSQIQQLKDAIEKLLI

A0A6J1HQD3 Ribonucloprotein8.8e-62100Show/hide
Query:  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
        TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
Subjt:  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA

Query:  CSVTTNEGSQLKSQIQQLKDAIEKLLI
        CSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  CSVTTNEGSQLKSQIQQLKDAIEKLLI

A0A6P5T0D6 Ribonucloprotein5.2e-6290.14Show/hide
Query:  DYTDAPGTDKDNRIETGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSK
        D +  P   KD  +ETGEAVN KAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMA DTEP+EILLHLPLLAEDKNVPYVFVPSK
Subjt:  DYTDAPGTDKDNRIETGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSK

Query:  QALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI
        QALGRACGVTRPVIACSVT+NEGSQLKSQIQQLKDAIEKLLI
Subjt:  QALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI

SwissProt top hitse value%identityAlignment
P55769 NHP2-like protein 15.2e-5181.3Show/hide
Query:  VNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT
        VNPKAYPLADA LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEF+VMAAD EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIACSVT
Subjt:  VNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT

Query:  TNEGSQLKSQIQQLKDAIEKLLI
          EGSQLK QIQ ++ +IE+LL+
Subjt:  TNEGSQLKSQIQQLKDAIEKLLI

Q3B8S0 NHP2-like protein 15.2e-5181.3Show/hide
Query:  VNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT
        VNPKAYPLADA LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEF+VMAAD EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIACSVT
Subjt:  VNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT

Query:  TNEGSQLKSQIQQLKDAIEKLLI
          EGSQLK QIQ ++ +IE+LL+
Subjt:  TNEGSQLKSQIQQLKDAIEKLLI

Q4R5C6 NHP2-like protein 15.2e-5181.3Show/hide
Query:  VNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT
        VNPKAYPLADA LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEF+VMAAD EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIACSVT
Subjt:  VNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT

Query:  TNEGSQLKSQIQQLKDAIEKLLI
          EGSQLK QIQ ++ +IE+LL+
Subjt:  TNEGSQLKSQIQQLKDAIEKLLI

Q5XH16 NHP2-like protein 11.2e-5281.89Show/hide
Query:  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
        T   VNPKAYPLADAQLT T+LDLVQQ+ANYKQL+KGANEATKTLNRGI+EF+VMAAD EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIA
Subjt:  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA

Query:  CSVTTNEGSQLKSQIQQLKDAIEKLLI
        CSVT  EGSQLK QIQ ++ AIE+LL+
Subjt:  CSVTTNEGSQLKSQIQQLKDAIEKLLI

Q6P8E9 NHP2-like protein 11.2e-5281.89Show/hide
Query:  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
        T   VNPKAYPLADAQLT T+LDLVQQAANYKQL+KGANEATKTLNRGI+EF+VMAAD EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIA
Subjt:  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA

Query:  CSVTTNEGSQLKSQIQQLKDAIEKLLI
        C+VT  EGSQLK QIQ L+ +IE+LL+
Subjt:  CSVTTNEGSQLKSQIQQLKDAIEKLLI

Arabidopsis top hitse value%identityAlignment
AT4G12600.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein4.8e-6092.13Show/hide
Query:  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
        T E VNPKAYPLAD+QL+ITILDLVQQA NYKQLKKGANEATKTLNRGISEF+VMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRAC VTRPVIA
Subjt:  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA

Query:  CSVTTNEGSQLKSQIQQLKDAIEKLLI
        CSVT+NE SQLKSQIQ LKDAIEKLLI
Subjt:  CSVTTNEGSQLKSQIQQLKDAIEKLLI

AT4G12600.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein2.2e-5264.29Show/hide
Query:  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDK-------------------------
        T E VNPKAYPLAD+QL+ITILDLVQQA NYKQLKKGANEATKTLNRGISEF+VMAADTEPLEILLHLPLLAEDK                         
Subjt:  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDK-------------------------

Query:  ------------------------------NVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI
                                      NVPYVFVPSKQALGRAC VTRPVIACSVT+NE SQLKSQIQ LKDAIEKLLI
Subjt:  ------------------------------NVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI

AT4G22380.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein3.3e-6192.91Show/hide
Query:  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
        TGE VNPKAYPLAD+QL+ITI+DLVQQA NYKQLKKGANEATKTLNRGISEFVVMAAD EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
Subjt:  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA

Query:  CSVTTNEGSQLKSQIQQLKDAIEKLLI
        CSVT+NE SQLKSQIQ LKDAIEKLLI
Subjt:  CSVTTNEGSQLKSQIQQLKDAIEKLLI

AT5G20160.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein1.9e-6193.7Show/hide
Query:  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
        TGE VNPKAYPLAD+QL+ITILDLVQQA NYKQLKKGANEATKTLNRGISEFVVMAAD EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
Subjt:  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA

Query:  CSVTTNEGSQLKSQIQQLKDAIEKLLI
        CSVT+NE SQLKSQIQ LKDAIEKLLI
Subjt:  CSVTTNEGSQLKSQIQQLKDAIEKLLI

AT5G20160.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein1.9e-5674.84Show/hide
Query:  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANE--------------------------------ATKTLNRGISEFVVMAADTEPLEILLHL
        TGE VNPKAYPLAD+QL+ITILDLVQQA NYKQLKKGANE                                ATKTLNRGISEFVVMAAD EPLEILLHL
Subjt:  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANE--------------------------------ATKTLNRGISEFVVMAADTEPLEILLHL

Query:  PLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI
        PLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT+NE SQLKSQIQ LKDAIEKLLI
Subjt:  PLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTAATTTTGGACTACACTGATGCACCAGGAACTGACAAGGACAATCGGATAGAGACAGGAGAAGCGGTGAATCCCAAAGCCTATCCTTTGGCCGATGCCCAGCTTACAAT
TACTATTCTTGATCTTGTTCAGCAAGCTGCTAACTACAAGCAGCTAAAGAAGGGTGCGAATGAAGCCACTAAGACGCTGAATAGAGGGATTTCGGAGTTTGTAGTGATGG
CTGCGGACACTGAGCCGCTTGAGATTCTTCTCCATCTTCCCTTGTTGGCGGAAGATAAGAATGTTCCCTATGTATTTGTCCCTTCAAAGCAAGCTCTTGGCCGAGCATGT
GGAGTCACGAGACCTGTAATTGCATGTTCTGTAACGACAAACGAGGGAAGCCAATTGAAATCTCAGATACAGCAATTGAAGGATGCCATTGAGAAGCTGTTGATCTGA
mRNA sequenceShow/hide mRNA sequence
GTAATTTTGGACTACACTGATGCACCAGGAACTGACAAGGACAATCGGATAGAGACAGGAGAAGCGGTGAATCCCAAAGCCTATCCTTTGGCCGATGCCCAGCTTACAAT
TACTATTCTTGATCTTGTTCAGCAAGCTGCTAACTACAAGCAGCTAAAGAAGGGTGCGAATGAAGCCACTAAGACGCTGAATAGAGGGATTTCGGAGTTTGTAGTGATGG
CTGCGGACACTGAGCCGCTTGAGATTCTTCTCCATCTTCCCTTGTTGGCGGAAGATAAGAATGTTCCCTATGTATTTGTCCCTTCAAAGCAAGCTCTTGGCCGAGCATGT
GGAGTCACGAGACCTGTAATTGCATGTTCTGTAACGACAAACGAGGGAAGCCAATTGAAATCTCAGATACAGCAATTGAAGGATGCCATTGAGAAGCTGTTGATCTGA
Protein sequenceShow/hide protein sequence
VILDYTDAPGTDKDNRIETGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRAC
GVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI