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Spg003398 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003398
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPSII 6.1 kDa protein
Genome locationscaffold4:46226947..46228382
RNA-Seq ExpressionSpg003398
SyntenySpg003398
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008456049.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucumis melo]6.6e-5083.58Show/hide
Query:  MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLL HS L+LKGS+K +LPS TMAA RLP LQKMK G IKC++EEKPEGK SEESM+  TVAAVA AA+AAAGPAVALVDER+STEGTGLPFGLSNN
Subjt:  MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAGVFGLIWALYFVYASSLEEDEDSGLSL
        LLGWILAG+FGLIWALYFVYASSL+EDEDSGLSL
Subjt:  LLGWILAGVFGLIWALYFVYASSLEEDEDSGLSL

XP_022937622.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita moschata]7.1e-5285.07Show/hide
Query:  MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLLSHSG+ LKGS K +LP P MAAHRLPV+QKMKKGGIKC+LEEK EGK S+ES+IS TVAA+AT  VA AGPAVALVDERLSTEGTGLPFGLSNN
Subjt:  MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAGVFGLIWALYFVYASSLEEDEDSGLSL
        LLGWILAG+FG IWALYFVYASSLEEDEDSGLSL
Subjt:  LLGWILAGVFGLIWALYFVYASSLEEDEDSGLSL

XP_022966002.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita maxima]7.8e-5185.82Show/hide
Query:  MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLLSHSG+ LKGS K +LP P MAAHRL V+QK KKGGIKCRLEEK E KSS+ESMIS TVAAVAT  VA AGPAVALVDERLSTEGTGLPFGLSNN
Subjt:  MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAGVFGLIWALYFVYASSLEEDEDSGLSL
        LLGWILAG+FG IWALYFVYASSLEEDEDSGLSL
Subjt:  LLGWILAGVFGLIWALYFVYASSLEEDEDSGLSL

XP_023521133.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo subsp. pepo]5.4e-5286.57Show/hide
Query:  MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLLSHSG+ LKGS K +LP P MAAHRL V+QKMKKGGIKCRLEEK EGK S+ESMIS TVAAVAT  VA AGPAVALVDERLSTEGTGLPFGLSNN
Subjt:  MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAGVFGLIWALYFVYASSLEEDEDSGLSL
        LLGWILAG+FG IWALYFVYASSLEEDEDSGLSL
Subjt:  LLGWILAGVFGLIWALYFVYASSLEEDEDSGLSL

XP_038890119.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]1.7e-5387.31Show/hide
Query:  MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLLSHS L+LKGS+KV LPSP +AAHRLP+LQKMKKGGIKCR+EEKPEGK SEES++S T+AAVA AA+AAAGPAVALVDERLSTEGTGLPFGLSNN
Subjt:  MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAGVFGLIWALYFVYASSLEEDEDSGLSL
        LLGWILAGVF LIWALYFVYASSL+EDEDSGLSL
Subjt:  LLGWILAGVFGLIWALYFVYASSLEEDEDSGLSL

TrEMBL top hitse value%identityAlignment
A0A0A0LJA2 PSII 6.1 kDa protein1.2e-4984.44Show/hide
Query:  MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKS-SEESMISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSN
        MASTLL HS L+LKGS+K +L SPTMAAHRLP LQKMKKGGIKC +EEKPEGK  SEESM+  TV AVA AA+AAAGPAVALVDERLSTEGTGLPFGLSN
Subjt:  MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKS-SEESMISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSN

Query:  NLLGWILAGVFGLIWALYFVYASSLEEDEDSGLSL
        NLLGWILA VF LIWALYFVYASSL+EDEDSGLSL
Subjt:  NLLGWILAGVFGLIWALYFVYASSLEEDEDSGLSL

A0A1S3C2B0 PSII 6.1 kDa protein3.2e-5083.58Show/hide
Query:  MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLL HS L+LKGS+K +LPS TMAA RLP LQKMK G IKC++EEKPEGK SEESM+  TVAAVA AA+AAAGPAVALVDER+STEGTGLPFGLSNN
Subjt:  MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAGVFGLIWALYFVYASSLEEDEDSGLSL
        LLGWILAG+FGLIWALYFVYASSL+EDEDSGLSL
Subjt:  LLGWILAGVFGLIWALYFVYASSLEEDEDSGLSL

A0A6J1CNY5 PSII 6.1 kDa protein8.2e-4679.1Show/hide
Query:  MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLLSHSGL LKGS K + P P MAA RL ++ KMKKGGIKC++EE+PE KSS ES +S T+AAV  A VAAAGPA ALVDERLSTEGTGLPFGLSNN
Subjt:  MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAGVFGLIWALYFVYASSLEEDEDSGLSL
        LL WILAGVF LIWALYFVYASSL+EDEDSGLSL
Subjt:  LLGWILAGVFGLIWALYFVYASSLEEDEDSGLSL

A0A6J1FBR0 PSII 6.1 kDa protein3.4e-5285.07Show/hide
Query:  MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLLSHSG+ LKGS K +LP P MAAHRLPV+QKMKKGGIKC+LEEK EGK S+ES+IS TVAA+AT  VA AGPAVALVDERLSTEGTGLPFGLSNN
Subjt:  MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAGVFGLIWALYFVYASSLEEDEDSGLSL
        LLGWILAG+FG IWALYFVYASSLEEDEDSGLSL
Subjt:  LLGWILAGVFGLIWALYFVYASSLEEDEDSGLSL

A0A6J1HLU7 PSII 6.1 kDa protein3.8e-5185.82Show/hide
Query:  MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLLSHSG+ LKGS K +LP P MAAHRL V+QK KKGGIKCRLEEK E KSS+ESMIS TVAAVAT  VA AGPAVALVDERLSTEGTGLPFGLSNN
Subjt:  MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAGVFGLIWALYFVYASSLEEDEDSGLSL
        LLGWILAG+FG IWALYFVYASSLEEDEDSGLSL
Subjt:  LLGWILAGVFGLIWALYFVYASSLEEDEDSGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic6.3e-2755.8Show/hide
Query:  MASTLLSHSGLVLKGSAKVILPSPTMAAH--RLPVLQKMKKGGIKCRLEEKPEGKSSEESMISATVAAVATAAVAA--AGPAVALVDERLSTEGTGLPFG
        MAS   S S +     A ++ P+  ++A    LP + K KKGG++C +E     K    S++ A V+A ATAA+ A  + PA+ALVDER+STEGTGLPFG
Subjt:  MASTLLSHSGLVLKGSAKVILPSPTMAAH--RLPVLQKMKKGGIKCRLEEKPEGKSSEESMISATVAAVATAAVAA--AGPAVALVDERLSTEGTGLPFG

Query:  LSNNLLGWILAGVFGLIWALYFVYASSLEEDEDSGLSL
        LSNNLLGWIL GVFGLIW  +FVY SSLEEDE+SGLSL
Subjt:  LSNNLLGWILAGVFGLIWALYFVYASSLEEDEDSGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic2.6e-2553.28Show/hide
Query:  ASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPE----GKSSEESMISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGL
        +++L++ + LV   S   +  SP +    LP + K  K  + C +E KP       ++ +SM ++ +AA A A +  + PA+ALVDER+STEGTGLPFGL
Subjt:  ASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPE----GKSSEESMISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGL

Query:  SNNLLGWILAGVFGLIWALYFVYASSLEEDEDSGLSL
        SNNLLGWIL GVFGLIWALYFVYAS LEEDE+SGLSL
Subjt:  SNNLLGWILAGVFGLIWALYFVYASSLEEDEDSGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic2.8e-1947.83Show/hide
Query:  AKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWAL
        A+ +L  P      LP ++  +   ++C   ++    ++      A++ A+A    A A PA+ALVDER+STEGTGL  GLSNNLLGWIL GVFGLIW+L
Subjt:  AKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWAL

Query:  YFVYASSLEEDEDSG
        Y +Y S LEEDE+SG
Subjt:  YFVYASSLEEDEDSG

Q9SPI9 Photosystem II reaction center W protein, chloroplastic4.8e-1148.75Show/hide
Query:  SMISATVAAVAT-AAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLE--EDEDSGLSL
        S ++  VA ++T  A  AA PA ALVDER++ +GTG PFG+++ +LGW+L GVFG +WA++F+    L   ED D GL L
Subjt:  SMISATVAAVAT-AAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLE--EDEDSGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W4.5e-2855.8Show/hide
Query:  MASTLLSHSGLVLKGSAKVILPSPTMAAH--RLPVLQKMKKGGIKCRLEEKPEGKSSEESMISATVAAVATAAVAA--AGPAVALVDERLSTEGTGLPFG
        MAS   S S +     A ++ P+  ++A    LP + K KKGG++C +E     K    S++ A V+A ATAA+ A  + PA+ALVDER+STEGTGLPFG
Subjt:  MASTLLSHSGLVLKGSAKVILPSPTMAAH--RLPVLQKMKKGGIKCRLEEKPEGKSSEESMISATVAAVATAAVAA--AGPAVALVDERLSTEGTGLPFG

Query:  LSNNLLGWILAGVFGLIWALYFVYASSLEEDEDSGLSL
        LSNNLLGWIL GVFGLIW  +FVY SSLEEDE+SGLSL
Subjt:  LSNNLLGWILAGVFGLIWALYFVYASSLEEDEDSGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCACTCTGCTTTCTCACTCCGGGCTTGTGCTCAAAGGATCAGCCAAGGTCATTCTTCCATCGCCAACAATGGCAGCTCACCGGTTGCCTGTGTTGCAAAAGAT
GAAGAAGGGAGGGATTAAGTGCAGGTTGGAAGAGAAGCCAGAAGGAAAGAGCTCAGAAGAAAGTATGATTTCCGCGACGGTGGCGGCCGTGGCGACGGCTGCGGTGGCAG
CGGCAGGTCCCGCGGTGGCGCTGGTGGATGAGAGATTGAGCACAGAAGGCACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTGGGGTGGATTCTGGCTGGGGTGTTT
GGTTTAATTTGGGCTCTCTATTTTGTTTATGCTTCATCCTTGGAGGAGGATGAAGATTCTGGTTTGTCCCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCACTCTGCTTTCTCACTCCGGGCTTGTGCTCAAAGGATCAGCCAAGGTCATTCTTCCATCGCCAACAATGGCAGCTCACCGGTTGCCTGTGTTGCAAAAGAT
GAAGAAGGGAGGGATTAAGTGCAGGTTGGAAGAGAAGCCAGAAGGAAAGAGCTCAGAAGAAAGTATGATTTCCGCGACGGTGGCGGCCGTGGCGACGGCTGCGGTGGCAG
CGGCAGGTCCCGCGGTGGCGCTGGTGGATGAGAGATTGAGCACAGAAGGCACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTGGGGTGGATTCTGGCTGGGGTGTTT
GGTTTAATTTGGGCTCTCTATTTTGTTTATGCTTCATCCTTGGAGGAGGATGAAGATTCTGGTTTGTCCCTCTGA
Protein sequenceShow/hide protein sequence
MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVF
GLIWALYFVYASSLEEDEDSGLSL