; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg003408 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003408
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Genome locationscaffold4:46662656..46664088
RNA-Seq ExpressionSpg003408
SyntenySpg003408
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG8503305.1 hypothetical protein CXB51_001285 [Gossypium anomalum]8.6e-0434.57Show/hide
Query:  KVVTDGGGSGGACRNVVDGIKCVLRDDKGHARGASAYHLDFDMEGTMAELRAILEGIRLVISMGFGKILVESDCMLAINLI
        KV  DG   GG  +    GI  ++RD++G   G +A  +D  MEG + E  A ++ +++   MG+ +I++ESDC+  +NL+
Subjt:  KVVTDGGGSGGACRNVVDGIKCVLRDDKGHARGASAYHLDFDMEGTMAELRAILEGIRLVISMGFGKILVESDCMLAINLI

XP_010686140.1 PREDICTED: uncharacterized protein LOC104900422 [Beta vulgaris subsp. vulgaris]6.6e-0431.76Show/hide
Query:  VKVVTDGGGSGGACRNVVDGIKCVLRDDKGHARGASAYHLDFDMEGTMAELRAILEGIRLVISMGFGKILVESDCMLAINLIQKK
        +K+  D G +GG     + G+  V RD +G     +A  +  + E  +AE RA+LEG+ +  ++G  K+++ESDC   +  +QK+
Subjt:  VKVVTDGGGSGGACRNVVDGIKCVLRDDKGHARGASAYHLDFDMEGTMAELRAILEGIRLVISMGFGKILVESDCMLAINLIQKK

XP_018829673.1 uncharacterized protein LOC108997753 [Juglans regia]3.0e-0435.71Show/hide
Query:  VVKVVTDGGGSGGACRNVVDGIKCVLRDDKGHARGASAYHLDFDMEGTMAELRAILEGIRLVISMGFGKILVESDCMLAINLIQ
        ++K+  DG   G  C++   G+ C+LRDDKG    A+        E    EL  +L G++L +SMG  +I VESDC+L +  ++
Subjt:  VVKVVTDGGGSGGACRNVVDGIKCVLRDDKGHARGASAYHLDFDMEGTMAELRAILEGIRLVISMGFGKILVESDCMLAINLIQ

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]8.6e-0434.57Show/hide
Query:  SGGACRNVVDGIKCVLRDDKGHARGASAYHLDFDMEGTMAELRAILEGIRLVISMGFGKILVESDCMLAINLIQKKTEKLG
        S  ACR+   G+  ++RD  G    A +  L   +    AE+R ILE ++L  S  + +++VESDC  AI L+Q     +G
Subjt:  SGGACRNVVDGIKCVLRDDKGHARGASAYHLDFDMEGTMAELRAILEGIRLVISMGFGKILVESDCMLAINLIQKKTEKLG

TrEMBL top hitse value%identityAlignment
A0A2I4FDF5 uncharacterized protein LOC1089977531.4e-0435.71Show/hide
Query:  VVKVVTDGGGSGGACRNVVDGIKCVLRDDKGHARGASAYHLDFDMEGTMAELRAILEGIRLVISMGFGKILVESDCMLAINLIQ
        ++K+  DG   G  C++   G+ C+LRDDKG    A+        E    EL  +L G++L +SMG  +I VESDC+L +  ++
Subjt:  VVKVVTDGGGSGGACRNVVDGIKCVLRDDKGHARGASAYHLDFDMEGTMAELRAILEGIRLVISMGFGKILVESDCMLAINLIQ

A0A6J1BQ49 uncharacterized protein LOC1110047864.2e-0434.57Show/hide
Query:  SGGACRNVVDGIKCVLRDDKGHARGASAYHLDFDMEGTMAELRAILEGIRLVISMGFGKILVESDCMLAINLIQKKTEKLG
        S  ACR+   G+  ++RD  G    A +  L   +    AE+R ILE ++L  S  + +++VESDC  AI L+Q     +G
Subjt:  SGGACRNVVDGIKCVLRDDKGHARGASAYHLDFDMEGTMAELRAILEGIRLVISMGFGKILVESDCMLAINLIQKKTEKLG

A0A803P018 Uncharacterized protein3.2e-0439.08Show/hide
Query:  VKVVTDGGGSGGACRNVVDGIKCVLRDDKGHARGASAYHLDFDMEGTMAELRAILEGIRLVISMGFGKILVESDCMLAINLIQKKTE
        +K+  D G   G     V G+ CV+RD  G    ASA  +  ++     EL+AIL G+++ I   F +  +ESDC+ AI LIQKK E
Subjt:  VKVVTDGGGSGGACRNVVDGIKCVLRDDKGHARGASAYHLDFDMEGTMAELRAILEGIRLVISMGFGKILVESDCMLAINLIQKKTE

A0A803P6S3 Uncharacterized protein4.2e-0438.64Show/hide
Query:  VKVVTDGG-GSGGACRNVVDGIKCVLRDDKGHARGASAYHLDFDMEGTMAELRAILEGIRLVISMGFGKILVESDCMLAINLIQKKTE
        VK+  D G   GG C     G+ CV RD  G  R A+A  +   +     EL AI  G++L I   + +  +ESDC+ A+NLIQKK +
Subjt:  VKVVTDGG-GSGGACRNVVDGIKCVLRDDKGHARGASAYHLDFDMEGTMAELRAILEGIRLVISMGFGKILVESDCMLAINLIQKKTE

A0A803PGA4 Uncharacterized protein1.7e-0542.31Show/hide
Query:  SGGACRNVVDGIKCVLRDDKGHARGASAYHLDFDMEGTMAELRAILEGIRLVISMGFGKILVESDCMLAINLIQKKTE
        +G  C   V GI CV+RD  GH++ AS+  +  ++     EL+AIL GI++ I     +  +ESDC+ AI LIQKK E
Subjt:  SGGACRNVVDGIKCVLRDDKGHARGASAYHLDFDMEGTMAELRAILEGIRLVISMGFGKILVESDCMLAINLIQKKTE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTGGTTGTTAAAGTGGTCACCGATGGGGGTGGCAGTGGTGGTGCTTGTCGAAATGTCGTCGATGGAATCAAATGTGTATTAAGGGATGATAAGGGTCATGCGAG
GGGAGCATCTGCTTATCATCTAGATTTTGATATGGAAGGAACAATGGCGGAGCTGAGAGCGATCCTCGAAGGAATTCGCTTGGTGATTTCTATGGGGTTTGGAAAAATTT
TGGTGGAGTCGGATTGCATGTTAGCGATAAATTTAATTCAAAAGAAAACAGAGAAGTTGGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGTGGTTGTTAAAGTGGTCACCGATGGGGGTGGCAGTGGTGGTGCTTGTCGAAATGTCGTCGATGGAATCAAATGTGTATTAAGGGATGATAAGGGTCATGCGAG
GGGAGCATCTGCTTATCATCTAGATTTTGATATGGAAGGAACAATGGCGGAGCTGAGAGCGATCCTCGAAGGAATTCGCTTGGTGATTTCTATGGGGTTTGGAAAAATTT
TGGTGGAGTCGGATTGCATGTTAGCGATAAATTTAATTCAAAAGAAAACAGAGAAGTTGGGGTGA
Protein sequenceShow/hide protein sequence
MVVVVKVVTDGGGSGGACRNVVDGIKCVLRDDKGHARGASAYHLDFDMEGTMAELRAILEGIRLVISMGFGKILVESDCMLAINLIQKKTEKLG