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Spg003412 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003412
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold4:46228851..46229417
RNA-Seq ExpressionSpg003412
SyntenySpg003412
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4274760.1 unnamed protein product [Prunus armeniaca]4.7e-0935.88Show/hide
Query:  MNSDASWNEAQGCGGVGWIIRDSQGSLVVAGSK-TLHRNWPIDMLEAFATIKEGLLNFLNLNPPPHIGLIVESDAEDLISSLISSSPNLTEIHFILDEVR
        +N DA+W+  +  GGVGW+IRDS G L+ AG +  LH +  I M+E  A I+  L    N +      +IVESD++  I  L   +   +++  I+ ++R
Subjt:  MNSDASWNEAQGCGGVGWIIRDSQGSLVVAGSK-TLHRNWPIDMLEAFATIKEGLLNFLNLNPPPHIGLIVESDAEDLISSLISSSPNLTEIHFILDEVR

Query:  SIASTIKDICFLWCPRSSNGVAHSLARFASR
         + +++  + F++ PRS N  AHS+A FAS+
Subjt:  SIASTIKDICFLWCPRSSNGVAHSLARFASR

KAF7825130.1 putative RNA-directed DNA polymerase [Senna tora]3.6e-0933.59Show/hide
Query:  MNSDASWNEAQGCGGVGWIIRDSQGSLVVAGSKTLHRNWPIDMLEAFATIKEGLLNFLNLNPPPHIGLIVESDAEDLISSLISSSPNLTEIHFILDEVRS
        +N DAS  E QG  G+  ++R+ QG  + A +K +     +D+LEA+A + EGL     L       +I+E DA+ ++  + SS+PNL+ +  ++D++R 
Subjt:  MNSDASWNEAQGCGGVGWIIRDSQGSLVVAGSKTLHRNWPIDMLEAFATIKEGLLNFLNLNPPPHIGLIVESDAEDLISSLISSSPNLTEIHFILDEVRS

Query:  IASTIKDICFLWCPRSSNGVAHSLARFASRV
          ++   +   W PR+SN VAH +A FA  +
Subjt:  IASTIKDICFLWCPRSSNGVAHSLARFASRV

KAF7826352.1 uncharacterized protein G2W53_017516 [Senna tora]7.2e-1035.88Show/hide
Query:  MNSDASWNEAQGCGGVGWIIRDSQGSLVVAGSKTLHRNWPIDMLEAFATIKEGLLNFLNLNPPPHIGLIVESDAEDLISSLISSSPNLTEIHFILDEVRS
        +N DAS  E QG GG+G ++R+ QG  + A +K +      ++LEA+A + EGL    NL       +I+E DA+ ++  +  SS NL+ +  I+D++R 
Subjt:  MNSDASWNEAQGCGGVGWIIRDSQGSLVVAGSKTLHRNWPIDMLEAFATIKEGLLNFLNLNPPPHIGLIVESDAEDLISSLISSSPNLTEIHFILDEVRS

Query:  IASTIKDICFLWCPRSSNGVAHSLARFASRV
               +   W PR+SN VA S+A FAS +
Subjt:  IASTIKDICFLWCPRSSNGVAHSLARFASRV

KAF7842590.1 putative RNA-directed DNA polymerase [Senna tora]1.6e-0935.61Show/hide
Query:  MNSDASWNEAQGCGGVGWIIRDSQGSLVVAGSKTLHRNWPIDMLEAFATIKEGLLNFLNLNPPPHIGLIVESDAEDLISSLISSSPNLTEIHFILDEVRS
        +N DAS  E QG GG+G ++R+ QG  + A +K +      ++LEAFA + EGL    NL       +I+E DA+ ++  +  SS NL+ +  ++D++R 
Subjt:  MNSDASWNEAQGCGGVGWIIRDSQGSLVVAGSKTLHRNWPIDMLEAFATIKEGLLNFLNLNPPPHIGLIVESDAEDLISSLISSSPNLTEIHFILDEVRS

Query:  IASTIKDICFLWCPRSSNGVAHSLARFASRVL
               +   W PR+SN VA  +A FA  VL
Subjt:  IASTIKDICFLWCPRSSNGVAHSLARFASRVL

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.2e-1136.64Show/hide
Query:  MNSDASWNEAQGCGGVGWIIRDSQGSLVVAGSKTLHRNWPIDMLEAFATIKEGLLNFLNLN--PPPHIGLIVESDAEDLISSLISSSPNLTEIHFILDEV
        +N+DASW+++   GG+GWIIR   G +V+AG++ +     + +LEA A I EGL N  NL    P HI    E+D+ ++ S L     +LT+  ++++E+
Subjt:  MNSDASWNEAQGCGGVGWIIRDSQGSLVVAGSKTLHRNWPIDMLEAFATIKEGLLNFLNLN--PPPHIGLIVESDAEDLISSLISSSPNLTEIHFILDEV

Query:  RSIASTIKDICFLWCPRSSNGVAHSLARFAS
         ++  + + + F    R +NG AHSLA+ AS
Subjt:  RSIASTIKDICFLWCPRSSNGVAHSLARFAS

TrEMBL top hitse value%identityAlignment
A0A3L6PT36 RNase H domain-containing protein1.1e-0831.54Show/hide
Query:  MNSDASWNEAQGCGGVGWIIRDSQGSLVVAGSKTLHRNWPIDMLEAFATIKEGLLNFLNLNPPPHIGLIVESDAEDLISSLISSSPNLTEIHFILDEVRS
        +N D +++   G GGVG +IRD+ GS+++   K + R    + +EA A   EGLL      PP     ++E+D   ++ +L+    + + + FI++E R 
Subjt:  MNSDASWNEAQGCGGVGWIIRDSQGSLVVAGSKTLHRNWPIDMLEAFATIKEGLLNFLNLNPPPHIGLIVESDAEDLISSLISSSPNLTEIHFILDEVRS

Query:  IASTIKDICFLWCPRSSNGVAHSLARFASR
          + + D   +   R SNGV+H LA+ A R
Subjt:  IASTIKDICFLWCPRSSNGVAHSLARFASR

A0A6J1DNV9 uncharacterized protein LOC1110224031.1e-1136.64Show/hide
Query:  MNSDASWNEAQGCGGVGWIIRDSQGSLVVAGSKTLHRNWPIDMLEAFATIKEGLLNFLNLN--PPPHIGLIVESDAEDLISSLISSSPNLTEIHFILDEV
        +N+DASW+++   GG+GWIIR   G +V+AG++ +     + +LEA A I EGL N  NL    P HI    E+D+ ++ S L     +LT+  ++++E+
Subjt:  MNSDASWNEAQGCGGVGWIIRDSQGSLVVAGSKTLHRNWPIDMLEAFATIKEGLLNFLNLN--PPPHIGLIVESDAEDLISSLISSSPNLTEIHFILDEV

Query:  RSIASTIKDICFLWCPRSSNGVAHSLARFAS
         ++  + + + F    R +NG AHSLA+ AS
Subjt:  RSIASTIKDICFLWCPRSSNGVAHSLARFAS

A0A6J5UE59 Reverse transcriptase domain-containing protein2.3e-0935.88Show/hide
Query:  MNSDASWNEAQGCGGVGWIIRDSQGSLVVAGSK-TLHRNWPIDMLEAFATIKEGLLNFLNLNPPPHIGLIVESDAEDLISSLISSSPNLTEIHFILDEVR
        +N DA+W+  +  GGVGW+IRDS G L+ AG +  LH +  I M+E  A I+  L    N +      +IVESD++  I  L   +   +++  I+ ++R
Subjt:  MNSDASWNEAQGCGGVGWIIRDSQGSLVVAGSK-TLHRNWPIDMLEAFATIKEGLLNFLNLNPPPHIGLIVESDAEDLISSLISSSPNLTEIHFILDEVR

Query:  SIASTIKDICFLWCPRSSNGVAHSLARFASR
         + +++  + F++ PRS N  AHS+A FAS+
Subjt:  SIASTIKDICFLWCPRSSNGVAHSLARFASR

A0A6J5UF50 Uncharacterized protein2.3e-0935.88Show/hide
Query:  MNSDASWNEAQGCGGVGWIIRDSQGSLVVAGSK-TLHRNWPIDMLEAFATIKEGLLNFLNLNPPPHIGLIVESDAEDLISSLISSSPNLTEIHFILDEVR
        +N DA+W+  +  GGVGW+IRDS G L+ AG +  LH +  I M+E  A I+  L    N +      +IVESD++  I  L   +   +++  I+ ++R
Subjt:  MNSDASWNEAQGCGGVGWIIRDSQGSLVVAGSK-TLHRNWPIDMLEAFATIKEGLLNFLNLNPPPHIGLIVESDAEDLISSLISSSPNLTEIHFILDEVR

Query:  SIASTIKDICFLWCPRSSNGVAHSLARFASR
         + +++  + F++ PRS N  AHS+A FAS+
Subjt:  SIASTIKDICFLWCPRSSNGVAHSLARFASR

A0A6J5WPU6 Reverse transcriptase domain-containing protein6.6e-0935.11Show/hide
Query:  MNSDASWNEAQGCGGVGWIIRDSQGSLVVAGSK-TLHRNWPIDMLEAFATIKEGLLNFLNLNPPPHIGLIVESDAEDLISSLISSSPNLTEIHFILDEVR
        +N DA+W+  +  GGVGW+IRDS G L+ AG +  LH +  I M+E  A I+  L    N +      +IVESD++  I  L   +   +++  I+ ++R
Subjt:  MNSDASWNEAQGCGGVGWIIRDSQGSLVVAGSK-TLHRNWPIDMLEAFATIKEGLLNFLNLNPPPHIGLIVESDAEDLISSLISSSPNLTEIHFILDEVR

Query:  SIASTIKDICFLWCPRSSNGVAHSLARFASR
         + +++  + F++ PRS N  AHS+A F S+
Subjt:  SIASTIKDICFLWCPRSSNGVAHSLARFASR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.7e-0727.78Show/hide
Query:  NSDASWNEAQGCGGVGWIIRDSQGSLVVAGSKTLHRNWPIDMLEA-FATIKEGLLNFLNLNPPPHIGLIVESDAEDLISSLISSSPNLTEIHFILDEVRS
        N+DA+W       G+GWI+R+  G ++  G++ L R    ++LEA    ++  +L     N   +  +I ESDA+ L+ +L++S      +   L++++ 
Subjt:  NSDASWNEAQGCGGVGWIIRDSQGSLVVAGSKTLHRNWPIDMLEA-FATIKEGLLNFLNLNPPPHIGLIVESDAEDLISSLISSSPNLTEIHFILDEVRS

Query:  IASTIKDICFLWCPRSSNGVAHSLAR
        +    +++ F + PR  N VA  +AR
Subjt:  IASTIKDICFLWCPRSSNGVAHSLAR

AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.6e-0729.92Show/hide
Query:  SDASWNEAQGCGGVGWIIRDSQGSLVVAGSKTLHRNWPIDMLEAFATIKEGLLNFLNLNPPPHIG---LIVESDAEDLISSLISSSPNLTEIHFILDEVR
        +DA+W       G GW+IR+    L     ++  RN  + ++       E +  FL L     IG   L + SD++ LI+++ S SP+ TE + I+ ++ 
Subjt:  SDASWNEAQGCGGVGWIIRDSQGSLVVAGSKTLHRNWPIDMLEAFATIKEGLLNFLNLNPPPHIG---LIVESDAEDLISSLISSSPNLTEIHFILDEVR

Query:  SIASTIKDICFLWCPRSSNGVAHSLAR
        +++    D+ F + PRS N VA  LA+
Subjt:  SIASTIKDICFLWCPRSSNGVAHSLAR

AT4G29090.1 Ribonuclease H-like superfamily protein2.0e-0524.44Show/hide
Query:  NSDASWNEAQGCGGVGWIIRDSQGSLVVAGSKTLHRNWPIDMLEAFATIKEGLLNFLNLNPPPHIGLIVESDAEDLISSLISSSPNLTEIHFILDEVRSI
        N+DA+WN      G+GW++R+ +G +   G++ L +   +  LE  A ++      L+L+   +  +I ESD++ LI  ++++      +   + +++ +
Subjt:  NSDASWNEAQGCGGVGWIIRDSQGSLVVAGSKTLHRNWPIDMLEAFATIKEGLLNFLNLNPPPHIGLIVESDAEDLISSLISSSPNLTEIHFILDEVRSI

Query:  ASTIKDICFLWCPRSSNGVAHSLARFASRVLSPRP
         S   ++ F++ PR  N +A  +AR +   L+  P
Subjt:  ASTIKDICFLWCPRSSNGVAHSLARFASRVLSPRP

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.7e-0528.35Show/hide
Query:  NSDASWNEAQGCGGVGWIIRDSQGSLVVAGSKTLHRNWPIDMLEAFATIKEGLLNFLNLNPPPHIGLIVESDAEDLISSLISSSPNLTEIHFILDEVRSI
        N DAS +E     G+GWI+R+SQG+++  G          +  E    I     ++       H  +I E D + +   + + S N    HF LD ++S 
Subjt:  NSDASWNEAQGCGGVGWIIRDSQGSLVVAGSKTLHRNWPIDMLEAFATIKEGLLNFLNLNPPPHIGLIVESDAEDLISSLISSSPNLTEIHFILDEVRSI

Query:  ASTIKDICFLWCPRSSNGVAHSLARFA
          + + I F +  R  NG A  LA+ A
Subjt:  ASTIKDICFLWCPRSSNGVAHSLARFA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTCAGATGCCTCTTGGAATGAGGCCCAAGGTTGTGGAGGTGTTGGTTGGATAATCCGTGACTCCCAAGGATCTTTGGTGGTTGCGGGCAGCAAAACTTTACACAG
AAATTGGCCGATTGATATGCTTGAAGCGTTTGCGACGATCAAGGAAGGGTTGTTGAATTTCCTTAATCTCAATCCTCCCCCCCATATCGGCTTGATCGTGGAATCTGACG
CTGAGGACCTGATCAGCTCGCTTATCTCTTCATCTCCCAATCTCACTGAAATTCACTTCATCTTGGATGAAGTGAGATCGATCGCTAGCACCATCAAGGATATCTGCTTC
CTCTGGTGCCCTAGATCTTCAAATGGTGTCGCGCATTCTCTCGCGCGTTTTGCTTCTCGAGTGTTGTCGCCTCGACCTCCTTCAAATGAAGCCGGTGGCAGTTTGTCTGT
TTATTTGGATTCTTCGCAATTTCCCTCTTCTTCTTCCCCGGAAGTCTGTTTTTTTGGTAGGGAATCGTCTTTGCCTTTCTGGTTGTCCTCTGCTATAATCGAGGACCTTG
TTTGTTGTGGTGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAACTCAGATGCCTCTTGGAATGAGGCCCAAGGTTGTGGAGGTGTTGGTTGGATAATCCGTGACTCCCAAGGATCTTTGGTGGTTGCGGGCAGCAAAACTTTACACAG
AAATTGGCCGATTGATATGCTTGAAGCGTTTGCGACGATCAAGGAAGGGTTGTTGAATTTCCTTAATCTCAATCCTCCCCCCCATATCGGCTTGATCGTGGAATCTGACG
CTGAGGACCTGATCAGCTCGCTTATCTCTTCATCTCCCAATCTCACTGAAATTCACTTCATCTTGGATGAAGTGAGATCGATCGCTAGCACCATCAAGGATATCTGCTTC
CTCTGGTGCCCTAGATCTTCAAATGGTGTCGCGCATTCTCTCGCGCGTTTTGCTTCTCGAGTGTTGTCGCCTCGACCTCCTTCAAATGAAGCCGGTGGCAGTTTGTCTGT
TTATTTGGATTCTTCGCAATTTCCCTCTTCTTCTTCCCCGGAAGTCTGTTTTTTTGGTAGGGAATCGTCTTTGCCTTTCTGGTTGTCCTCTGCTATAATCGAGGACCTTG
TTTGTTGTGGTGGTTAG
Protein sequenceShow/hide protein sequence
MNSDASWNEAQGCGGVGWIIRDSQGSLVVAGSKTLHRNWPIDMLEAFATIKEGLLNFLNLNPPPHIGLIVESDAEDLISSLISSSPNLTEIHFILDEVRSIASTIKDICF
LWCPRSSNGVAHSLARFASRVLSPRPPSNEAGGSLSVYLDSSQFPSSSSPEVCFFGRESSLPFWLSSAIIEDLVCCGG