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Spg003507 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003507
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold4:47130444..47132054
RNA-Seq ExpressionSpg003507
SyntenySpg003507
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0050794 - regulation of cellular process (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039966.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.2e-0844.29Show/hide
Query:  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEASLISLNWEVF
        +++ V++     + LW+IW ERN+R F+   + VA + EDI AL G W S S LF NY+AS I+LN   F
Subjt:  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEASLISLNWEVF
KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.2e-0844.29Show/hide
Query:  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEASLISLNWEVF
        +++ V++     + LW+IW ERN+R F+   + VA + EDI AL G W S S LF NY+AS I+LN   F
Subjt:  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEASLISLNWEVF
TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.9e-0844.29Show/hide
Query:  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEASLISLNWEVF
        +++ V++     + LW+IW ERN+R F+   + VA + EDI AL G W S S LF NY+AS I+LN   F
Subjt:  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEASLISLNWEVF
TYK14764.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.9e-0844.29Show/hide
Query:  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEASLISLNWEVF
        +++ V++     + LW+IW ERN+R F+   + VA + EDI AL G W S S LF NY+AS I+LN   F
Subjt:  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEASLISLNWEVF
TYK24536.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.2e-0844.29Show/hide
Query:  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEASLISLNWEVF
        +++ V++     + LW+IW ERN+R F+   + VA + EDI AL G W S S LF NY+AS I+LN   F
Subjt:  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEASLISLNWEVF
TrEMBL top hitse value%identityAlignment
A0A5A7TCY9 LINE-1 retrotransposable element ORF2 protein2.5e-0844.29Show/hide
Query:  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEASLISLNWEVF
        +++ V++     + LW+IW ERN+R F+   + VA + EDI AL G W S S LF NY+AS I+LN   F
Subjt:  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEASLISLNWEVF
A0A5A7TES3 LINE-1 retrotransposable element ORF2 protein2.5e-0844.29Show/hide
Query:  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEASLISLNWEVF
        +++ V++     + LW+IW ERN+R F+   + VA + EDI AL G W S S LF NY+AS I+LN   F
Subjt:  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEASLISLNWEVF
A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein4.3e-0844.29Show/hide
Query:  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEASLISLNWEVF
        +++ V++     + LW+IW ERN+R F+   + VA + EDI AL G W S S LF NY+AS I+LN   F
Subjt:  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEASLISLNWEVF
A0A5D3CUY9 LINE-1 retrotransposable element ORF2 protein4.3e-0844.29Show/hide
Query:  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEASLISLNWEVF
        +++ V++     + LW+IW ERN+R F+   + VA + EDI AL G W S S LF NY+AS I+LN   F
Subjt:  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEASLISLNWEVF
A0A5D3DLM2 LINE-1 retrotransposable element ORF2 protein2.5e-0844.29Show/hide
Query:  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEASLISLNWEVF
        +++ V++     + LW+IW ERN+R F+   + VA + EDI AL G W S S LF NY+AS I+LN   F
Subjt:  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEASLISLNWEVF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTGTCGGTAGAGAGTCTTTCTGTCGAGGTGTGCTCAATACGCTTCGGTCTTCATTTTCCTCTGCCACGCCTTCCATTGACACCTTCCTCATGGACATTTTCTATAG
TCATCTTTCTTCTCAAAGGCAAGTTCTGATCCAGGCCTTCGTGGGTGCCGTTTTATGGTCTATTTGGAAAGAAAGGAATAGCCGCACTTTTTCTGATTCTTCTCGCAACG
TGGCTGCTCTTAGGGAGGACATTCTCGCTCTAACCGGCTTTTGGGCTTCATCGTCTGATTTATTTTGTAATTATGAAGCCTCCTTGATTTCCCTTAACTGGGAAGTTTTT
ATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGTGTCGGTAGAGAGTCTTTCTGTCGAGGTGTGCTCAATACGCTTCGGTCTTCATTTTCCTCTGCCACGCCTTCCATTGACACCTTCCTCATGGACATTTTCTATAG
TCATCTTTCTTCTCAAAGGCAAGTTCTGATCCAGGCCTTCGTGGGTGCCGTTTTATGGTCTATTTGGAAAGAAAGGAATAGCCGCACTTTTTCTGATTCTTCTCGCAACG
TGGCTGCTCTTAGGGAGGACATTCTCGCTCTAACCGGCTTTTGGGCTTCATCGTCTGATTTATTTTGTAATTATGAAGCCTCCTTGATTTCCCTTAACTGGGAAGTTTTT
ATGTAG
Protein sequenceShow/hide protein sequence
MRVGRESFCRGVLNTLRSSFSSATPSIDTFLMDIFYSHLSSQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEASLISLNWEVF
M